Non-Coding RNA Search

Ss1.1-OvF4-UMC-p4mm3-013-g01.3

Sequence:


               
               CGGTGCCTCCGCAAAAGGGTTCCCTGGGCCGTCTCGCGTTCCTCCCTGCCTCCGAAGGGC
GCGTCCCGCCCCGCCAACGCCCCTAACCCCAGGGCCGGGAGCCCGCCCCTTGCCCGTCCT
CTCAGCGCCGGGCTCTGCCCTGCAGCCCGGCCCTATGCACTGCCCCGTCCCCCGCGCCCG
GCCCGCCCAGGCCCGGCCCCGGGCCCCGCCCGCAGAGCCATCCTGCCACGCCTCCTCCCA
CGCCTGCAGCTTCTTGCGAGGGGCAATGATAGCCCCCTGTGGCAGGAGGGGCTGCCCAGG
TTGGGAGGTGAGGCGGTCGCTCTCTATTTTCAAATGTTGCTGTAGAAATAAAGACGGTTT
GACTCTGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTGCCTCCGCAAAAGGGTTCCCTGGGCCGTCTCGCGTTCCTCCCTGCCTCCGAAGGGC
GCGTCCCGCCCCGCCAACGCCCCTAACCCCAGGGCCGGGAGCCCGCCCCTTGCCCGTCCT
CTCAGCGCCGGGCTCTGCCCTGCAGCCCGGCCCTATGCACTGCCCCGTCCCCCGCGCCCG
GCCCGCCCAGGCCCGGCCCCGGGCCCCGCCCGCAGAGCCATCCTGCCACGCCTCCTCCCA
CGCCTGCAGCTTCTTGCGAGGGGCAATGATAGCCCCCTGTGGCAGGAGGGGCTGCCCAGG
TTGGGAGGTGAGGCGGTCGCTCTCTATTTTCAAATGTTGCTGTAGAAATAAAGACGGTTT
GACTCTGAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               189-307, - strand, RNAz p=0.594849
               

               
               235-368, - strand, RNAz p=0.916911

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               189-307, - strand, RNAz p=0.594849
               

               
               235-368, - strand, RNAz p=0.916911

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               252-327, + strand, RNAmicro p=0.911163

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               252-327, + strand, RNAmicro p=0.911163

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-368, gnl|bosTau2|chr29 (39870832-39871198)
               

               
               1-368, gnl|canFam2|chr18 (54060949-54060642)
               

               
               1-368, gnl|echTel1|scaffold_267184 (514-712)
               

               
               1-368, gnl|hg17|chr11 (65791488-65791790)
               

               
               1-368, gnl|Hg17|chr11 (65791536-65791907)
               

               
               1-368, gnl|loxAfr1|scaffold_116620 (1187-1476)
               

               
               1-368, gnl|mm7|chr19 (5002947-5002653)
               

               
               1-368, gnl|Mm7|chr19 (5002899-5002553)
               

               
               1-368, gnl|oryCun1|scaffold_186501 (4030-3823)
               

               
               1-368, gnl|panTro1|chr9 (67043573-67043876)
               

               
               1-368, gnl|rheMac2|chr14 (8176389-8176087)
               

               
               1-368, gnl|rn3|chr1 (207881994-207881716)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-368, gnl|bosTau2|chr29 (39870832-39871198)
               

               
               1-368, gnl|canFam2|chr18 (54060949-54060642)
               

               
               1-368, gnl|echTel1|scaffold_267184 (514-712)
               

               
               1-368, gnl|hg17|chr11 (65791488-65791790)
               

               
               1-368, gnl|Hg17|chr11 (65791536-65791907)
               

               
               1-368, gnl|loxAfr1|scaffold_116620 (1187-1476)
               

               
               1-368, gnl|mm7|chr19 (5002947-5002653)
               

               
               1-368, gnl|Mm7|chr19 (5002899-5002553)
               

               
               1-368, gnl|oryCun1|scaffold_186501 (4030-3823)
               

               
               1-368, gnl|panTro1|chr9 (67043573-67043876)
               

               
               1-368, gnl|rheMac2|chr14 (8176389-8176087)
               

               
               1-368, gnl|rn3|chr1 (207881994-207881716)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.39557)
               

               
               fbs (0.175346)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               fbs (0.175346)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

	189-307, - strand, RNAz p=0.594849
	235-368, - strand, RNAz p=0.916911

	1-368, gnl\|bosTau2\|chr29 (39870832-39871198)
	1-368, gnl\|canFam2\|chr18 (54060949-54060642)
	1-368, gnl\|echTel1\|scaffold_267184 (514-712)
	1-368, gnl\|hg17\|chr11 (65791488-65791790)
	1-368, gnl\|Hg17\|chr11 (65791536-65791907)
	1-368, gnl\|loxAfr1\|scaffold_116620 (1187-1476)
	1-368, gnl\|mm7\|chr19 (5002947-5002653)
	1-368, gnl\|Mm7\|chr19 (5002899-5002553)
	1-368, gnl\|oryCun1\|scaffold_186501 (4030-3823)
	1-368, gnl\|panTro1\|chr9 (67043573-67043876)
	1-368, gnl\|rheMac2\|chr14 (8176389-8176087)
	1-368, gnl\|rn3\|chr1 (207881994-207881716)