Non-Coding RNA Search

Ss1.1-OvF6-UMC-p6mm3-004-e05.3

Sequence:


               
               CCACACCGCACCCACTCTGCACCCACATCCCCTTCACCCTGAGTCCTGCACCCTCGGGGA
AGGGTCTGACCTGTTCTGGCACTCATGGGTGCTGCTCCCTGCCCCATGGATATGCGCGTG
CACGGGCGCGTGCGCGCGCACACACACACACACGCGCACACACATGTCATGTGCAAACAG
CCCTTCTTGGCAGAAATGACCACAAGGGCTCGCCACCTGCTGGTCCATCTATCTCTCGGG
GAAGATGCAGAGTTATTTCCGAGCTCTCTGCAGCCAGGCGCCTGTACCCTCTGGAACTCA
CAAAAGCTGGCTTTTGTTCCTTTCCCTTCATCTGGGGACAGGAACCTCCAGGACTGCTGC
CCTGGCCCATGCGCCCTGCTCCCCACCACTGGGGCAGTCACTCCCCGCCACACCCTGGCC
GGCCCCAGGCATGCCTTTGATGGGCAAGCCCCTCCGAGGCCAGAGGGATGGTCTGGGTGT
GCTGGGGGCCGCGGGCCTGCCCTAGGTGGAGATGGAGGGGCTGGCCTGAGCAAGAGCCAA
GGGCCCAGCTGCACCGATGAGAGACCTTTTTATTCTTTGGGCCTGAGGGGAGTTCTGGGT
ACCTTTGGGTTTTTTTTAATTCTTTTTTAAGAAAAAAAATGATAAAGAATTCAAAGCTGA
TTTTTGTTGTTACAGAAAAGCTAATATAAAAGCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACACCGCACCCACTCTGCACCCACATCCCCTTCACCCTGAGTCCTGCACCCTCGGGGA
AGGGTCTGACCTGTTCTGGCACTCATGGGTGCTGCTCCCTGCCCCATGGATATGCGCGTG
CACGGGCGCGTGCGCGCGCACACACACACACACGCGCACACACATGTCATGTGCAAACAG
CCCTTCTTGGCAGAAATGACCACAAGGGCTCGCCACCTGCTGGTCCATCTATCTCTCGGG
GAAGATGCAGAGTTATTTCCGAGCTCTCTGCAGCCAGGCGCCTGTACCCTCTGGAACTCA
CAAAAGCTGGCTTTTGTTCCTTTCCCTTCATCTGGGGACAGGAACCTCCAGGACTGCTGC
CCTGGCCCATGCGCCCTGCTCCCCACCACTGGGGCAGTCACTCCCCGCCACACCCTGGCC
GGCCCCAGGCATGCCTTTGATGGGCAAGCCCCTCCGAGGCCAGAGGGATGGTCTGGGTGT
GCTGGGGGCCGCGGGCCTGCCCTAGGTGGAGATGGAGGGGCTGGCCTGAGCAAGAGCCAA
GGGCCCAGCTGCACCGATGAGAGACCTTTTTATTCTTTGGGCCTGAGGGGAGTTCTGGGT
ACCTTTGGGTTTTTTTTAATTCTTTTTTAAGAAAAAAAATGATAAAGAATTCAAAGCTGA
TTTTTGTTGTTACAGAAAAGCTAATATAAAAGCATT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               37-202, - strand, RNAz p=0.999827
               

               
               237-452, - strand, RNAz p=0.999993

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-202, - strand, RNAz p=0.999827
               

               
               237-452, - strand, RNAz p=0.999993

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               438-551, - strand, RNAmicro p=0.900563

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               438-551, - strand, RNAmicro p=0.900563

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               37-696, gnl|bosTau2|chr12 (48540798-48540125)
               

               
               37-696, gnl|Hg17|chr1 (53262480-53263180)
               

               
               37-696, gnl|Mm7|chr4 (107391938-107391248)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-696, gnl|bosTau2|chr12 (48540798-48540125)
               

               
               37-696, gnl|Hg17|chr1 (53262480-53263180)
               

               
               37-696, gnl|Mm7|chr4 (107391938-107391248)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mas (0.210305)
               

               
               cly (0.120642)
               

               
               clu (0.119646)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               cly (0.120642)
               

               
               clu (0.119646)

	37-202, - strand, RNAz p=0.999827
	237-452, - strand, RNAz p=0.999993

	37-696, gnl\|bosTau2\|chr12 (48540798-48540125)
	37-696, gnl\|Hg17\|chr1 (53262480-53263180)
	37-696, gnl\|Mm7\|chr4 (107391938-107391248)