Non-Coding RNA Search

Ss1.1-OvF6-UMC-p6mm3-005-b05.3

Sequence:


               
               CAGCAATCAGCAGACTCGGGAGTTCGTGGAAAAGGGGGGCCGCCTGCCCTGCCCCGAGCT
GTGTCCCGATGCTGTATTCAGACTCATGGAGCAGTGCTGGGCCTACGAGCCTGGGCAGCG
GCCCAACTTCAGCACCATCTACCAGGAGCTGCAGAGCATCCGAAAGCGGCACCGGTGAGG
CTGGAGCCCCACTTCTCAAGCCAGTGGCCTCTGCAGGCCAGACCGTACCTCCTCACCAGC
TCCAGCTCACACCATCAGACAGCTCCTTGTTGCCCTGGACTCCAGCCACTGGTATTCATG
CTGCCAGCAGGGAGGCGGCTCCACGTCTGCTGGGCAGCCTGGCTCCTGCCAGGGCTTCCT
CTTCCAGGCAAAAATAATAAAACCACTTGTGCCCATCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAATCAGCAGACTCGGGAGTTCGTGGAAAAGGGGGGCCGCCTGCCCTGCCCCGAGCT
GTGTCCCGATGCTGTATTCAGACTCATGGAGCAGTGCTGGGCCTACGAGCCTGGGCAGCG
GCCCAACTTCAGCACCATCTACCAGGAGCTGCAGAGCATCCGAAAGCGGCACCGGTGAGG
CTGGAGCCCCACTTCTCAAGCCAGTGGCCTCTGCAGGCCAGACCGTACCTCCTCACCAGC
TCCAGCTCACACCATCAGACAGCTCCTTGTTGCCCTGGACTCCAGCCACTGGTATTCATG
CTGCCAGCAGGGAGGCGGCTCCACGTCTGCTGGGCAGCCTGGCTCCTGCCAGGGCTTCCT
CTTCCAGGCAAAAATAATAAAACCACTTGTGCCCATCAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               35-153, - strand, RNAz p=0.856865
               

               
               272-398, - strand, RNAz p=0.628029

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               35-153, - strand, RNAz p=0.856865
               

               
               272-398, - strand, RNAz p=0.628029

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               37-124, + strand, RNAmicro p=0.994662
               

               
               270-391, - strand, RNAmicro p=0.970654
               

               
               274-371, + strand, RNAmicro p=0.917743

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               37-124, + strand, RNAmicro p=0.994662
               

               
               270-391, - strand, RNAmicro p=0.970654
               

               
               274-371, + strand, RNAmicro p=0.917743

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               35-398, gnl|bosTau2|chr21 (12165201-12164837)
               

               
               35-398, gnl|Hg17|chr15 (89239649-89240008)
               

               
               35-398, gnl|Mm7|chr7 (76247260-76246945)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-398, gnl|bosTau2|chr21 (12165201-12164837)
               

               
               35-398, gnl|Hg17|chr15 (89239649-89240008)
               

               
               35-398, gnl|Mm7|chr7 (76247260-76246945)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ese (0.126502)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)
               

               
               nbm (0.0993246)

	35-153, - strand, RNAz p=0.856865
	272-398, - strand, RNAz p=0.628029

	37-124, + strand, RNAmicro p=0.994662
	270-391, - strand, RNAmicro p=0.970654
	274-371, + strand, RNAmicro p=0.917743

	35-398, gnl\|bosTau2\|chr21 (12165201-12164837)
	35-398, gnl\|Hg17\|chr15 (89239649-89240008)
	35-398, gnl\|Mm7\|chr7 (76247260-76246945)