Non-Coding RNA Search

Ss1.1-OvF6-UMC-p6mm3-006-h07.3

Sequence:


               
               GGAAGGCCAGGACGTGTGCCTCCAAGTGGAGACTGGCCGAGTGGGTGCAGCAGGGGCCGT
GCGCTGGGTGCGAGGGGGGGTGCCCCTCCCCCCCGACTCCCGCCTGGCCACAACGCAGGA
TGGCCATGTCCACCGCCTCCTCATCCACGGCGTTGTACCAGCTGACCAGGGCACCTATGG
CTGCGAGAGCCACCACGATCGCACCCTGGCCAGGCTCAGCGTCAGGCGTGAGTGCCCCGT
CCTCTCCTAACACACACCTGCCCCATGGCACAGCCTCTCCTGGCTGGCCCAGAGCCCCTC
AGACCCCCACCCAAGTGCCCCTCACTGCAAGGCAAGTTAGCCCTGGCTGACCCCCAGGAG
TGTGACCTGAAGCATCGTGCCCAAAGCAAAACTTTTCTTTTTCTAATGTTTTCTGTTTGC
TTTAGAAGTGCATGTGAATTTTGCATTCCATTTCATATGTCCAAGTTGGCTTTGCTATAA
ACATAAATATTATACTCCAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGCCAGGACGTGTGCCTCCAAGTGGAGACTGGCCGAGTGGGTGCAGCAGGGGCCGT
GCGCTGGGTGCGAGGGGGGGTGCCCCTCCCCCCCGACTCCCGCCTGGCCACAACGCAGGA
TGGCCATGTCCACCGCCTCCTCATCCACGGCGTTGTACCAGCTGACCAGGGCACCTATGG
CTGCGAGAGCCACCACGATCGCACCCTGGCCAGGCTCAGCGTCAGGCGTGAGTGCCCCGT
CCTCTCCTAACACACACCTGCCCCATGGCACAGCCTCTCCTGGCTGGCCCAGAGCCCCTC
AGACCCCCACCCAAGTGCCCCTCACTGCAAGGCAAGTTAGCCCTGGCTGACCCCCAGGAG
TGTGACCTGAAGCATCGTGCCCAAAGCAAAACTTTTCTTTTTCTAATGTTTTCTGTTTGC
TTTAGAAGTGCATGTGAATTTTGCATTCCATTTCATATGTCCAAGTTGGCTTTGCTATAA
ACATAAATATTATACTCCAGAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-238, - strand, RNAz p=0.519674

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-238, - strand, RNAz p=0.519674

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               78-174, - strand, RNAmicro p=0.993799

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               78-174, - strand, RNAmicro p=0.993799

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-503, gnl|bosTau2|chr2 (64345610-64346126)
               

               
               1-503, gnl|Hg17|chr2 (220246473-220245986)
               

               
               1-503, gnl|Mm7|chr1 (75717216-75716730)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-503, gnl|bosTau2|chr2 (64345610-64346126)
               

               
               1-503, gnl|Hg17|chr2 (220246473-220245986)
               

               
               1-503, gnl|Mm7|chr1 (75717216-75716730)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cut (0.169924)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)

	1-503, gnl\|bosTau2\|chr2 (64345610-64346126)
	1-503, gnl\|Hg17\|chr2 (220246473-220245986)
	1-503, gnl\|Mm7\|chr1 (75717216-75716730)