Non-Coding RNA Search

Ss1.1-OvF6-UMC-p6mm3-018-d09.3

Sequence:


               
               GTTCCACCCTGGGCCCTGGCATGTGGTCCCCGAGACCCACAGCTGCCTGGGAGGAGTCGG
AGACTGAGACCTACACAGAGGTGGTGACGGAGTTTGGGACGGAGCTGGGACCGGAGGAGG
AGGAGGAGGAGGAGGAGGGGGAGACGGCCACGGGTTCAGAGTTTCCCTTCACCACAGTAG
AGACCTACACAGTGAATTTTGGGGACTTCTGAGGACCGGTCTGCCAACGCACGAGCTTGC
AGCTGTAGCCATGTCGCCTTGGCCAGCTCGGCGGCCATCAGCACACGGAAGGCCCCCTGG
TGTGTGGGCCCTGCCAGGACGGGGCATGAATGTGACGGACACCTAAGAGCCAGGGCCTGC
ATCGGGCCCCTGCTCTGCCTGCCGGCCCCCTGGAGGACGGGCCGCTGCAGGGCTGGGCCA
GGCCGACTTCTCAGCCACCTGCCCAGGCCACGCCAATAAACCGAGCTCACGGCAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCACCCTGGGCCCTGGCATGTGGTCCCCGAGACCCACAGCTGCCTGGGAGGAGTCGG
AGACTGAGACCTACACAGAGGTGGTGACGGAGTTTGGGACGGAGCTGGGACCGGAGGAGG
AGGAGGAGGAGGAGGAGGGGGAGACGGCCACGGGTTCAGAGTTTCCCTTCACCACAGTAG
AGACCTACACAGTGAATTTTGGGGACTTCTGAGGACCGGTCTGCCAACGCACGAGCTTGC
AGCTGTAGCCATGTCGCCTTGGCCAGCTCGGCGGCCATCAGCACACGGAAGGCCCCCTGG
TGTGTGGGCCCTGCCAGGACGGGGCATGAATGTGACGGACACCTAAGAGCCAGGGCCTGC
ATCGGGCCCCTGCTCTGCCTGCCGGCCCCCTGGAGGACGGGCCGCTGCAGGGCTGGGCCA
GGCCGACTTCTCAGCCACCTGCCCAGGCCACGCCAATAAACCGAGCTCACGGCAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               53-474, gnl|bosTau2|chr4 (39068316-39068727)
               

               
               53-474, gnl|Hg17|chr7 (43926884-43927397)
               

               
               53-474, gnl|Mm7|chr11 (5823677-5824087)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-474, gnl|bosTau2|chr4 (39068316-39068727)
               

               
               53-474, gnl|Hg17|chr7 (43926884-43927397)
               

               
               53-474, gnl|Mm7|chr11 (5823677-5824087)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               jca (0.569801)
               

               
               amn (0.417711)
               

               
               cag (0.302389)
               

               
               ese (0.253004)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.569801)
               

               
               amn (0.417711)
               

               
               cag (0.302389)
               

               
               ese (0.253004)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)

	53-474, gnl\|bosTau2\|chr4 (39068316-39068727)
	53-474, gnl\|Hg17\|chr7 (43926884-43927397)
	53-474, gnl\|Mm7\|chr11 (5823677-5824087)

	jca (0.569801)
	amn (0.417711)
	cag (0.302389)
	ese (0.253004)
	cut (0.169924)
	fhi (0.169578)
	nca (0.136874)
	ute (0.132784)
	ova (0.129132)
	eru (0.120048)
	clu (0.119646)
	med (0.116252)