Non-Coding RNA Search

Ss1.1-OvF8-UMC-p8mm4-013-f12.3

Sequence:


               
               TGGAACCCTTTTGAATGAGGGGATTGGTTTTCTTGGCTCCCTCCACACCTGGCCAAGCTT
AGCTTCTGGAATAAGAATGAGCACATCTCTGCCCCACCCCACAGCATTTAGGACAGGGAG
GAACGGAGACTGCATTCTTGAACTCTACCGGGGCGGTCGGAACCCTTCTGGAAGAGGCAG
ACGGGGGGTGGGGGGCACACGACTGCCCCGGCCCCAGGCAGGGGCTGTAGGTCGCTCCGA
ATGTCAGCAGCAAGACTGCAGAGGGACGTGGGGAAGAGCTTGGAACCAGGCGGCTCACGG
AGAAAACAGACTTGACTTAGGAAGGGACTAGTAGGAATGGTGTTTGGACTTGATTTCCCC
ACCTCCTCATCAAGAATGGAAATTGGATCTGCCCCTCGCCAGGCTCAGCCTCTCCAAAGC
GTGGTGGGCTGTCCTCCAGCAGCCTCCACAGCCTTGGGGCCCCACCGGCTTCCTGCATTT
GGTCTGCTGATCATGTTGCCGTAATGTGCACGCAAAGTGTAACCAGTCGTATCGGTGAAA
GGTGAGCTCCCAGATACCTAACTTCTTTAACAGTGAGTTCTTGTGGGGGTTTCTTTTGGT
GTGTGTGTGTGTTTGGTTTTTTGTATATTGTTTACATTATGAGAGGTAGCATTCTATTTT
AAATGCTCTTTTTGTTTTCCTGACAGTATTGTTGACTGGGTCGAAACATTTGAGCTGTGG
TTTGGTGGATTTAAAAAAAGGTTTTAACGGTTTTTCTCTGGGCTGTCTTCAGAACCTTGG
GTTTGGTCCTCTAATTCCTTTGGCATTCGGATGTTTAAAAGCTATTTATCTTGGTTTATA
CACATTTCCCCTCTTCTTTTCTTTCTGTAACGATGATGTTATATTTGGTTTGCAGTCTGA
ATGTAGAGAAAGTGAAGTGATCCCCAAACTCTTATCCGCCCCCCTTCTTTTCTCCAAGTC
CCACCATGCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAACCCTTTTGAATGAGGGGATTGGTTTTCTTGGCTCCCTCCACACCTGGCCAAGCTT
AGCTTCTGGAATAAGAATGAGCACATCTCTGCCCCACCCCACAGCATTTAGGACAGGGAG
GAACGGAGACTGCATTCTTGAACTCTACCGGGGCGGTCGGAACCCTTCTGGAAGAGGCAG
ACGGGGGGTGGGGGGCACACGACTGCCCCGGCCCCAGGCAGGGGCTGTAGGTCGCTCCGA
ATGTCAGCAGCAAGACTGCAGAGGGACGTGGGGAAGAGCTTGGAACCAGGCGGCTCACGG
AGAAAACAGACTTGACTTAGGAAGGGACTAGTAGGAATGGTGTTTGGACTTGATTTCCCC
ACCTCCTCATCAAGAATGGAAATTGGATCTGCCCCTCGCCAGGCTCAGCCTCTCCAAAGC
GTGGTGGGCTGTCCTCCAGCAGCCTCCACAGCCTTGGGGCCCCACCGGCTTCCTGCATTT
GGTCTGCTGATCATGTTGCCGTAATGTGCACGCAAAGTGTAACCAGTCGTATCGGTGAAA
GGTGAGCTCCCAGATACCTAACTTCTTTAACAGTGAGTTCTTGTGGGGGTTTCTTTTGGT
GTGTGTGTGTGTTTGGTTTTTTGTATATTGTTTACATTATGAGAGGTAGCATTCTATTTT
AAATGCTCTTTTTGTTTTCCTGACAGTATTGTTGACTGGGTCGAAACATTTGAGCTGTGG
TTTGGTGGATTTAAAAAAAGGTTTTAACGGTTTTTCTCTGGGCTGTCTTCAGAACCTTGG
GTTTGGTCCTCTAATTCCTTTGGCATTCGGATGTTTAAAAGCTATTTATCTTGGTTTATA
CACATTTCCCCTCTTCTTTTCTTTCTGTAACGATGATGTTATATTTGGTTTGCAGTCTGA
ATGTAGAGAAAGTGAAGTGATCCCCAAACTCTTATCCGCCCCCCTTCTTTTCTCCAAGTC
CCACCATGCCCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               152-261, - strand, RNAz p=0.59125
               

               
               653-746, + strand, RNAz p=0.885469

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-261, - strand, RNAz p=0.59125
               

               
               653-746, + strand, RNAz p=0.885469

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-970, gnl|bosTau2|chr19 (35815364-35814419)
               

               
               1-970, gnl|Hg17|chr17 (34177906-34176949)
               

               
               1-970, gnl|Mm7|chr11 (97826421-97825593)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-970, gnl|bosTau2|chr19 (35815364-35814419)
               

               
               1-970, gnl|Hg17|chr17 (34177906-34176949)
               

               
               1-970, gnl|Mm7|chr11 (97826421-97825593)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ece (0.229305)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	152-261, - strand, RNAz p=0.59125
	653-746, + strand, RNAz p=0.885469

	1-970, gnl\|bosTau2\|chr19 (35815364-35814419)
	1-970, gnl\|Hg17\|chr17 (34177906-34176949)
	1-970, gnl\|Mm7\|chr11 (97826421-97825593)