Non-Coding RNA Search

Ss1.1-OvF8-UMC-p8mm4-016-b03.3

Sequence:


               
               TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAATTTTTTTTTTAAATTTATGTTGC
GGAAAGGTAACCACAAAGTTATGATGAACTGCAAACATCCAAAGGATGTGAGAGTTTTTA
TATGTATAATGTTTTATACACTTTTTAACTGGTTGCACTACCCATGAGGAATTCATGGAA
TAGCTACTGCTGAGGAACTAACATGATGACATAACCAAATGGGACCGATGGTACAGTAGC
TCACTCATTTAAAAATTATATTGACAGAGGGTATTTGGTTTGGGGGGGGCGCTTTTTAGG
TTTCGGAGTTTTGGTTTTTTGTAAATAGAATGATTATGCTTTGTGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAATTTTTTTTTTAAATTTATGTTGC
GGAAAGGTAACCACAAAGTTATGATGAACTGCAAACATCCAAAGGATGTGAGAGTTTTTA
TATGTATAATGTTTTATACACTTTTTAACTGGTTGCACTACCCATGAGGAATTCATGGAA
TAGCTACTGCTGAGGAACTAACATGATGACATAACCAAATGGGACCGATGGTACAGTAGC
TCACTCATTTAAAAATTATATTGACAGAGGGTATTTGGTTTGGGGGGGGCGCTTTTTAGG
TTTCGGAGTTTTGGTTTTTTGTAAATAGAATGATTATGCTTTGTGGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               36-195, - strand, RNAz p=0.99624

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-195, - strand, RNAz p=0.99624

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               48-193, DB520842 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB520842.1|), blast E-value=0, identity=97.95% 
               

               
               48-195, DB812587 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB812587.1|), blast E-value=0, identity=100% 
               

               
               48-195, DB813210 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB813210.1|), blast E-value=0, identity=100% 
               

               
               48-194, AJ813769 KN206 Bos sp. cDNA clone C0005205j2, mRNA sequence 
(emb|AJ813769.1|), blast E-value=0, identity=97.96% 
               

               
               48-194, LB0257.CR_C11 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV876944.1|), 
blast E-value=0, identity=97.96% 
               

               
               48-194, LB02533.CR.1_E10 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE340385.1|), 
blast E-value=0, identity=97.96%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               48-193, DB520842 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB520842.1|), blast E-value=0, identity=97.95% 
               

               
               48-195, DB812587 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB812587.1|), blast E-value=0, identity=100% 
               

               
               48-195, DB813210 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB813210.1|), blast E-value=0, identity=100% 
               

               
               48-194, AJ813769 KN206 Bos sp. cDNA clone C0005205j2, mRNA sequence 
(emb|AJ813769.1|), blast E-value=0, identity=97.96% 
               

               
               48-194, LB0257.CR_C11 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV876944.1|), 
blast E-value=0, identity=97.96% 
               

               
               48-194, LB02533.CR.1_E10 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE340385.1|), 
blast E-value=0, identity=97.96%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-348, gnl|bosTau2|chr12 (48373876-48374235)
               

               
               3-348, gnl|Hg17|chr1 (53424613-53424277)
               

               
               3-348, gnl|Mm7|chr4 (107248851-107249239)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-348, gnl|bosTau2|chr12 (48373876-48374235)
               

               
               3-348, gnl|Hg17|chr1 (53424613-53424277)
               

               
               3-348, gnl|Mm7|chr4 (107248851-107249239)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spc (0.113366)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	48-193, DB520842 RIKEN full-length enriched human cDNA library, testis Homo (dbj\|DB520842.1\|), blast E-value=0, identity=97.95%
	48-195, DB812587 full-length enriched swine cDNA library, adult ovary Sus (dbj\|DB812587.1\|), blast E-value=0, identity=100%
	48-195, DB813210 full-length enriched swine cDNA library, adult ovary Sus (dbj\|DB813210.1\|), blast E-value=0, identity=100%
	48-194, AJ813769 KN206 Bos sp. cDNA clone C0005205j2, mRNA sequence (emb\|AJ813769.1\|), blast E-value=0, identity=97.96%
	48-194, LB0257.CR_C11 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|DV876944.1\|), blast E-value=0, identity=97.96%
	48-194, LB02533.CR.1_E10 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|EE340385.1\|), blast E-value=0, identity=97.96%

	3-348, gnl\|bosTau2\|chr12 (48373876-48374235)
	3-348, gnl\|Hg17\|chr1 (53424613-53424277)
	3-348, gnl\|Mm7\|chr4 (107248851-107249239)