Non-Coding RNA Search

Ss1.1-Ova1-OVR010001A10.5

Sequence:


               
               TGCGGCCGAGCGTGGGCGCAGGCGGGTCTCGGAAGAACTCGGTCGCGAGACTCTCCCGCG
CACGCGACCCGGTCTCCCGCGCCTGCCTGCTGCTGCGCTGTCCCACCCGTCGCCCCCCGG
AGGAGTCGCCAACACCTCCCCGATAGGAGTCAGCGAGGTCGCGAGGCCGCAGTCACCGCC
ATGCCCAAGAATAAAGGTAAAGGAGGTAAAAATCGACGCAGAGGTAAGAATGAGAATGAA
TCTGAAAAGAGAGAGCTGGTGTTCAAAGAAGATGGGCAAGAGTATGCTCAAGTAATCAAA
ATGCTGGGAAATGGACGATTAGAAGCTATGTGTTTTGATGGTGTAAAGAGGTTATGTCAC
ATCAGAGGGAAATTGAGAAAAAAGGTTTGGATAAATACCTCAGACATTATATTGGTTGGT
CTACGAGATTACCAGGATAATAAAGCTGATGTAATTTTAAAATACAATGCAGATGAGGCT
AGAAGTCTGAAGGCATATGGCGAACTTCCAGAACATGCTAAAATCAATGAGACTGATACA
TTTGGTCCTGGAGATGATGATGAAATCCAGTTTGATGACATTGCAGATGATGATGAAGAT
ATTGATGATATCTAAATCAAACTCAGCCTTTTACATTCCACTTTCTCTGAAGATTGTTCA
ACAATTTGGATTTTGGCTGTGACCTGTTAAAGAAGATTAAAATCTCATTAGCATGAGTGC
AATTTGTTAAAGCAGACTGATTTGTTTCTAAGGTATTTCTTTAAAACTGGTAATACTGAA
CTCTCTTAGGTAAAACGTTAAGCCCACTTTGTTCTTTTGACGTAATGGAGCTTATAGGTA
AAAGACCACATCTACTGTATTAAAAAGAAAAAATGCATTACTGCCTTTCCCACTTTGACC
ACTTCCACTAAGTTAATGGATGTTTTGAATAAGCCATTTGCCGTACATTCACATTATGGA
TTATAAGTAAGCCCTAGATTTGACTAGCCTGTTGACTGTACAGTAAATTTCTGTATATTC
CAGTTACCTAGATGGTCCCTTTAGATTTGGGTACATTTCAAGGGAGGCAGAAATCTGTAT
TTGAAGTCAAAAATGATTGGCCTCTTTTTCATACTTAAGTAGCATGTGGCTATTTTTATA
CTAATTTTGATAATGTATATTCTTTTCATGATCGTATTTTGTCACTGTAAACATATCAAC
AAAAAGGCATTTCCAAAATGCAGTTTTTAGAACCTGGGTTTTAAAACCAATTTTGAATTT
GTTAAGGTTAGTAGTTGCAGAAATCAAACACTAGGTGGCGCCCAGTTAGTCTTAACATTG
GGAAGTACTGATAGAGTTGTCCCTTTTTTTTTAACTTTTACTGTGCACAGGAGGAAATTT
CCCAAACAACAAAAGATTGTGTTGATCATATGCATGTATGTAGAATATTTTTACAAAACA
AAAGGATTGTTAAAAGTGACGTTTTATTTTTAGAAGTCATCTATCTACATGTAAGCTACA
GTTCCAGTGCTTTATAAACACTTAAATTATGTGTAAATGAAAATTTAATTTCATAATGGC
TTGTACAAATTAAGCCTTTTTCAAAGTATCCCGAAGCTGGGGAAAGAGGAGGGAATGACA
ACTTACTGAAAAGATGGTCTCCAATTTCTGAATGGAAGAACTACATATGCAGAGAAATAT
AATAAAGATGATGTCATGCTGCAGAGTATATTATACCTTGCTTTGTGTTTAGGATGTATC
TTGTTGTGTGTACAGGTTTGTTGGCTTGTATTTTGCTGGGAGTTTTGACTTAGCTTTATT
ATGCAGTTTTTCATTATCAACTCTACTAAGATGAAATTAGGGGCGGGGCTGGTTAGACCT
CTCCAGCCGCATTGAAATGGTGTGCAGCTGTAAAAAGAGATCCTTCATTTAGTTTGTGAA
GCTTTTATTCTGTTGGTCTCCAGAGAGCTCTTCAGTGGTGAAAAGTAAGACACAGGGGAG
TAAACCTTCACATGGCTTTAGAAAATAAGCACATCTTTAATCCCATGCTCAGTATAAATT
CCTAAGTGTGCAAACTCAGGAGTAAAGATCTGAGGTACTATGAAACATTATTAAATCAAA
GAATAGAAATTAAGAGTGGACAATTGCAGTTTATGTTTCTTACTATTCTATGGAGTTCCT
GAACACTTTACCTAGATGGAATGAGTCTGAGACCATGATCTGGTTTTTAATACTTCTAAG
GAACCAGCCGTGAAGAATTGACTTAGTGATTGTTTTCATTAGTCATCTAAACTTGCTAAT
ATATTTAGGCTTCTGTACATAAAAGTGTTTTGCTAAATGTGTGCAGGATGTGTAGATTTT
CCCTCCACATTGTTTTACCCGAGAATGTTTTGACTCTGTATCTGTGCTACAATTCATGGT
AGAGATGGTGCATGCAACTCAAACATTAGTTTCTCTACTTACCTCCTCTAACAAATATGG
TTTGTCTAAAGATTCTTTAACAAATTACAACTATGACCCCAATTCATGTGTTTGCAAGTG
ATGTATTTTTTTCCTTGTCTAGCTAGTAACAGCCCTAGTGCTGTTGTACCCTAGAGACTC
TCAAATCATAATGATTAAAATAATTGGGGTAAACTTGTAGTTCTTATGCAACACTACTTA
GAGGAGTTATTTTACTAACTTTAATGTAGAAATTAGTTTCATTGATTTGATTATATTTCA
CATGAGGAATGGAAGTGGTCCTTAAGGGAAAAAAAAATTGTGTTATCCTGTTTGATTCCT
ATAATACAATGGTATAAGGTGTGCCCTGAAAGAAAATAAAATGTTTGAAATCTAAGAATA
ATGATTCTTACTGCTAAGAGAGTATAGTAATTATTCCAAATGTGTTTGATAGGACTGCAT
TTTTTATGCAGTGTTTATTCCACTTCCAATAGAGTGTAAATATGTTGTATTACTAAGGTG
GCTAAATAACCAAACCAGGTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGGCCGAGCGTGGGCGCAGGCGGGTCTCGGAAGAACTCGGTCGCGAGACTCTCCCGCG
CACGCGACCCGGTCTCCCGCGCCTGCCTGCTGCTGCGCTGTCCCACCCGTCGCCCCCCGG
AGGAGTCGCCAACACCTCCCCGATAGGAGTCAGCGAGGTCGCGAGGCCGCAGTCACCGCC
ATGCCCAAGAATAAAGGTAAAGGAGGTAAAAATCGACGCAGAGGTAAGAATGAGAATGAA
TCTGAAAAGAGAGAGCTGGTGTTCAAAGAAGATGGGCAAGAGTATGCTCAAGTAATCAAA
ATGCTGGGAAATGGACGATTAGAAGCTATGTGTTTTGATGGTGTAAAGAGGTTATGTCAC
ATCAGAGGGAAATTGAGAAAAAAGGTTTGGATAAATACCTCAGACATTATATTGGTTGGT
CTACGAGATTACCAGGATAATAAAGCTGATGTAATTTTAAAATACAATGCAGATGAGGCT
AGAAGTCTGAAGGCATATGGCGAACTTCCAGAACATGCTAAAATCAATGAGACTGATACA
TTTGGTCCTGGAGATGATGATGAAATCCAGTTTGATGACATTGCAGATGATGATGAAGAT
ATTGATGATATCTAAATCAAACTCAGCCTTTTACATTCCACTTTCTCTGAAGATTGTTCA
ACAATTTGGATTTTGGCTGTGACCTGTTAAAGAAGATTAAAATCTCATTAGCATGAGTGC
AATTTGTTAAAGCAGACTGATTTGTTTCTAAGGTATTTCTTTAAAACTGGTAATACTGAA
CTCTCTTAGGTAAAACGTTAAGCCCACTTTGTTCTTTTGACGTAATGGAGCTTATAGGTA
AAAGACCACATCTACTGTATTAAAAAGAAAAAATGCATTACTGCCTTTCCCACTTTGACC
ACTTCCACTAAGTTAATGGATGTTTTGAATAAGCCATTTGCCGTACATTCACATTATGGA
TTATAAGTAAGCCCTAGATTTGACTAGCCTGTTGACTGTACAGTAAATTTCTGTATATTC
CAGTTACCTAGATGGTCCCTTTAGATTTGGGTACATTTCAAGGGAGGCAGAAATCTGTAT
TTGAAGTCAAAAATGATTGGCCTCTTTTTCATACTTAAGTAGCATGTGGCTATTTTTATA
CTAATTTTGATAATGTATATTCTTTTCATGATCGTATTTTGTCACTGTAAACATATCAAC
AAAAAGGCATTTCCAAAATGCAGTTTTTAGAACCTGGGTTTTAAAACCAATTTTGAATTT
GTTAAGGTTAGTAGTTGCAGAAATCAAACACTAGGTGGCGCCCAGTTAGTCTTAACATTG
GGAAGTACTGATAGAGTTGTCCCTTTTTTTTTAACTTTTACTGTGCACAGGAGGAAATTT
CCCAAACAACAAAAGATTGTGTTGATCATATGCATGTATGTAGAATATTTTTACAAAACA
AAAGGATTGTTAAAAGTGACGTTTTATTTTTAGAAGTCATCTATCTACATGTAAGCTACA
GTTCCAGTGCTTTATAAACACTTAAATTATGTGTAAATGAAAATTTAATTTCATAATGGC
TTGTACAAATTAAGCCTTTTTCAAAGTATCCCGAAGCTGGGGAAAGAGGAGGGAATGACA
ACTTACTGAAAAGATGGTCTCCAATTTCTGAATGGAAGAACTACATATGCAGAGAAATAT
AATAAAGATGATGTCATGCTGCAGAGTATATTATACCTTGCTTTGTGTTTAGGATGTATC
TTGTTGTGTGTACAGGTTTGTTGGCTTGTATTTTGCTGGGAGTTTTGACTTAGCTTTATT
ATGCAGTTTTTCATTATCAACTCTACTAAGATGAAATTAGGGGCGGGGCTGGTTAGACCT
CTCCAGCCGCATTGAAATGGTGTGCAGCTGTAAAAAGAGATCCTTCATTTAGTTTGTGAA
GCTTTTATTCTGTTGGTCTCCAGAGAGCTCTTCAGTGGTGAAAAGTAAGACACAGGGGAG
TAAACCTTCACATGGCTTTAGAAAATAAGCACATCTTTAATCCCATGCTCAGTATAAATT
CCTAAGTGTGCAAACTCAGGAGTAAAGATCTGAGGTACTATGAAACATTATTAAATCAAA
GAATAGAAATTAAGAGTGGACAATTGCAGTTTATGTTTCTTACTATTCTATGGAGTTCCT
GAACACTTTACCTAGATGGAATGAGTCTGAGACCATGATCTGGTTTTTAATACTTCTAAG
GAACCAGCCGTGAAGAATTGACTTAGTGATTGTTTTCATTAGTCATCTAAACTTGCTAAT
ATATTTAGGCTTCTGTACATAAAAGTGTTTTGCTAAATGTGTGCAGGATGTGTAGATTTT
CCCTCCACATTGTTTTACCCGAGAATGTTTTGACTCTGTATCTGTGCTACAATTCATGGT
AGAGATGGTGCATGCAACTCAAACATTAGTTTCTCTACTTACCTCCTCTAACAAATATGG
TTTGTCTAAAGATTCTTTAACAAATTACAACTATGACCCCAATTCATGTGTTTGCAAGTG
ATGTATTTTTTTCCTTGTCTAGCTAGTAACAGCCCTAGTGCTGTTGTACCCTAGAGACTC
TCAAATCATAATGATTAAAATAATTGGGGTAAACTTGTAGTTCTTATGCAACACTACTTA
GAGGAGTTATTTTACTAACTTTAATGTAGAAATTAGTTTCATTGATTTGATTATATTTCA
CATGAGGAATGGAAGTGGTCCTTAAGGGAAAAAAAAATTGTGTTATCCTGTTTGATTCCT
ATAATACAATGGTATAAGGTGTGCCCTGAAAGAAAATAAAATGTTTGAAATCTAAGAATA
ATGATTCTTACTGCTAAGAGAGTATAGTAATTATTCCAAATGTGTTTGATAGGACTGCAT
TTTTTATGCAGTGTTTATTCCACTTCCAATAGAGTGTAAATATGTTGTATTACTAAGGTG
GCTAAATAACCAAACCAGGTGTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6NU16_XENLA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6NU16_XENLA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               351-507, - strand, RNAz p=0.804575

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               351-507, - strand, RNAz p=0.804575

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-713, gnl|bosTau2|chr3 (63690920-63691629)
               

               
               1-713, gnl|Hg17|chr1 (16758045-16757329)
               


               
               2416-2653, gnl|bosTau2|chr22 (45006944-45007182)
               

               
               2416-2653, gnl|Hg17|chr1 (16755626-16755396)
               


               
               2685-2964, gnl|bosTau2|chrX (39163368-39163645)
               

               
               2685-2964, gnl|Hg17|chrX (19903982-19903750)
               


               
               2702-2826, gnl|bosTau2|chr22 (45007185-45007309)
               

               
               2702-2826, gnl|Hg17|chr1 (16755380-16755221)
               

               
               2702-2826, gnl|Mm7|chr9 (123684211-123684081)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-713, gnl|bosTau2|chr3 (63690920-63691629)
               

               
               1-713, gnl|Hg17|chr1 (16758045-16757329)
               


               
               2416-2653, gnl|bosTau2|chr22 (45006944-45007182)
               

               
               2416-2653, gnl|Hg17|chr1 (16755626-16755396)
               


               
               2685-2964, gnl|bosTau2|chrX (39163368-39163645)
               

               
               2685-2964, gnl|Hg17|chrX (19903982-19903750)
               


               
               2702-2826, gnl|bosTau2|chr22 (45007185-45007309)
               

               
               2702-2826, gnl|Hg17|chr1 (16755380-16755221)
               

               
               2702-2826, gnl|Mm7|chr9 (123684211-123684081)

Expressed library(ies): 38 entry(ies)

More info

Expressed library(ies): 38 entry(ies)

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               cte (1.17096)
               

               
               vin (0.997672)
               

               
               tbr (0.925069)
               

               
               rec (0.865351)
               

               
               ste (0.676041)
               

               
               pro (0.512033)
               

               
               fat (0.442282)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               clu (0.239292)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (1.17096)
               

               
               vin (0.997672)
               

               
               tbr (0.925069)
               

               
               rec (0.865351)
               

               
               ste (0.676041)
               

               
               pro (0.512033)
               

               
               fat (0.442282)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               clu (0.239292)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	1-713, gnl\|bosTau2\|chr3 (63690920-63691629)
	1-713, gnl\|Hg17\|chr1 (16758045-16757329)

	2416-2653, gnl\|bosTau2\|chr22 (45006944-45007182)
	2416-2653, gnl\|Hg17\|chr1 (16755626-16755396)

	2685-2964, gnl\|bosTau2\|chrX (39163368-39163645)
	2685-2964, gnl\|Hg17\|chrX (19903982-19903750)

	2702-2826, gnl\|bosTau2\|chr22 (45007185-45007309)
	2702-2826, gnl\|Hg17\|chr1 (16755380-16755221)
	2702-2826, gnl\|Mm7\|chr9 (123684211-123684081)

	cte (1.17096)
	vin (0.997672)
	tbr (0.925069)
	rec (0.865351)
	ste (0.676041)
	pro (0.512033)
	fat (0.442282)
	sme (0.305437)
	isp (0.300752)
	bfe (0.299715)
	lin (0.291206)
	lnt (0.284616)
	fce (0.271592)
	lyg (0.266205)
	kid (0.259471)
	ova (0.258264)
	clu (0.239292)
	ece (0.229305)
	nms (0.213858)
	cty (0.20816)
	nep (0.183925)
	sag (0.182715)
	fty (0.17584)
	mcp (0.170648)
	fhi (0.169578)
	nje (0.16592)
	nco (0.161734)
	mga (0.160205)
	eli (0.151814)
	ski (0.146735)
	liv (0.146284)
	nca (0.136874)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	cly (0.120642)
	ecc (0.115035)
	ldo (0.0970026)