Non-Coding RNA Search

Ss1.1-Ova1-OVR010001G03.5

Sequence:


               
               GCACCACCATGGGGGCCCAGCTGAGCACGTTGGGCCACGTGGTCCTGTCCCCAGTCTGGT
TCCTGTATAGCCTGCTCATGAAGCTGTTCCAGCGTTCCACCCCGGCCATCACCCTCGAGA
ACCCAGACATCAAGTATCCGCTGAGGCTCATTGACAAGGAGGTCGTCAACCATGACACCC
GGCGGTTCCGCTTTGCCCTGCCGTCGCCCCAGCACATCCTGGGCCTCCCTGTGGGCCAGC
ACATCTACCTCTCGGCTCGGATTGATGGGAATCTGGTCATTCGGCCCTACACGCCCGTCT
CCAGTGATGACGACAAGGGCTTTGTGGACCTGGTCATCAAGGTGTACTTCAAAGACACCC
ACCCCAAGTTTCCCGCCGGAGGGAAGATGTCCCAGTACCTGGAGAGCATGAAGATCGGAG
ACACCATCGAGTTCCGGGGCCCCAACGGGCTGCTGGTCTACCAGGGCAAAGGAAAGTTTG
CCATCCGCCCGGACAAGAAATCCAGTCCCGTCATCAAGACGGTGAAGTCTGTTGGCATGA
TCGCGGGAGGAACCGGCATCACCCCAATGCTGCAGGTGATCCGAGCCATCATGAAGGACC
CGGATGACCACACCGTGTGCCACCTGCTCTTTGCCAACCAGACCGAGAAGGACATCCTGC
TGCGGCCCGAGCTGGAGGAACTGAGGAATGAACATTCTGCGCGCTTCAAGCTCTGGTACA
CGGTGGACAGAGCCCCAGAAGCCTGGGACTACAGCCAGGGCTTCGTGAACGAGGAGATGA
TCCGGGACCACCTTCCGCCCCCGGAGGAGGAGCCGCTGGTGCTGATGTGCGGGCCCCCGC
CCATGATCCAGTACGCCTGCCTGCCCAACCTGGAGCGCGTGGGCCACCCCAAGGAGCGCT
GCTTCGCCTTCTGATGGCCGGGCCCTGGCCGCTCGCGCGCGCCCCGCACCCCCGGGCCCT
GGCCGCACCCACCCCGCGCCGTGATCATTAACCTCACGCTCGCCCGCACCTCCTGCTGCG
GCCGGGTTCAGCCTGGCCTGCCCGTGCCTGGGAGGTCGCCCCGCTGGGCTGGCCCCCGGG
GGGCCCCGTGGGGAGCAGGGCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACCACCATGGGGGCCCAGCTGAGCACGTTGGGCCACGTGGTCCTGTCCCCAGTCTGGT
TCCTGTATAGCCTGCTCATGAAGCTGTTCCAGCGTTCCACCCCGGCCATCACCCTCGAGA
ACCCAGACATCAAGTATCCGCTGAGGCTCATTGACAAGGAGGTCGTCAACCATGACACCC
GGCGGTTCCGCTTTGCCCTGCCGTCGCCCCAGCACATCCTGGGCCTCCCTGTGGGCCAGC
ACATCTACCTCTCGGCTCGGATTGATGGGAATCTGGTCATTCGGCCCTACACGCCCGTCT
CCAGTGATGACGACAAGGGCTTTGTGGACCTGGTCATCAAGGTGTACTTCAAAGACACCC
ACCCCAAGTTTCCCGCCGGAGGGAAGATGTCCCAGTACCTGGAGAGCATGAAGATCGGAG
ACACCATCGAGTTCCGGGGCCCCAACGGGCTGCTGGTCTACCAGGGCAAAGGAAAGTTTG
CCATCCGCCCGGACAAGAAATCCAGTCCCGTCATCAAGACGGTGAAGTCTGTTGGCATGA
TCGCGGGAGGAACCGGCATCACCCCAATGCTGCAGGTGATCCGAGCCATCATGAAGGACC
CGGATGACCACACCGTGTGCCACCTGCTCTTTGCCAACCAGACCGAGAAGGACATCCTGC
TGCGGCCCGAGCTGGAGGAACTGAGGAATGAACATTCTGCGCGCTTCAAGCTCTGGTACA
CGGTGGACAGAGCCCCAGAAGCCTGGGACTACAGCCAGGGCTTCGTGAACGAGGAGATGA
TCCGGGACCACCTTCCGCCCCCGGAGGAGGAGCCGCTGGTGCTGATGTGCGGGCCCCCGC
CCATGATCCAGTACGCCTGCCTGCCCAACCTGGAGCGCGTGGGCCACCCCAAGGAGCGCT
GCTTCGCCTTCTGATGGCCGGGCCCTGGCCGCTCGCGCGCGCCCCGCACCCCCGGGCCCT
GGCCGCACCCACCCCGCGCCGTGATCATTAACCTCACGCTCGCCCGCACCTCCTGCTGCG
GCCGGGTTCAGCCTGGCCTGCCCGTGCCTGGGAGGTCGCCCCGCTGGGCTGGCCCCCGGG
GGGCCCCGTGGGGAGCAGGGCTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               NCB5R_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               NCB5R_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               965-1075, - strand, RNAz p=0.788707

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               965-1075, - strand, RNAz p=0.788707

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-932, gnl|bosTau2|chr3 (73405376-73404470)
               

               
               4-932, gnl|Hg17|chr22 (41351956-41340260)
               

               
               4-932, gnl|Mm7|chr15 (83250602-83238929)
               


               
               954-1075, gnl|bosTau2|chr3 (73404482-73404358)
               

               
               954-1075, gnl|Hg17|chr22 (41340271-41340130)
               

               
               954-1075, gnl|Mm7|chr15 (83238941-83238777)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-932, gnl|bosTau2|chr3 (73405376-73404470)
               

               
               4-932, gnl|Hg17|chr22 (41351956-41340260)
               

               
               4-932, gnl|Mm7|chr15 (83250602-83238929)
               


               
               954-1075, gnl|bosTau2|chr3 (73404482-73404358)
               

               
               954-1075, gnl|Hg17|chr22 (41340271-41340130)
               

               
               954-1075, gnl|Mm7|chr15 (83238941-83238777)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               eep (0.245128)
               

               
               ece (0.229305)
               

               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               ece (0.229305)
               

               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	4-932, gnl\|bosTau2\|chr3 (73405376-73404470)
	4-932, gnl\|Hg17\|chr22 (41351956-41340260)
	4-932, gnl\|Mm7\|chr15 (83250602-83238929)

	954-1075, gnl\|bosTau2\|chr3 (73404482-73404358)
	954-1075, gnl\|Hg17\|chr22 (41340271-41340130)
	954-1075, gnl\|Mm7\|chr15 (83238941-83238777)

	eep (0.245128)
	ece (0.229305)
	mcp (0.170648)
	hyp (0.142837)
	pla (0.133672)
	eru (0.120048)
	ebs (0.118301)