Non-Coding RNA Search

Ss1.1-Ova1-OVR010001G06.5

Sequence:


               
               AGGTGCCGAGCAAGGCAGCGGCAGCAGGCGGTTTAGCCGTGTGCCCTGGAGCACATGGGG
CGAAGTGCAGGTGATGTTATCCTGCTCCGGGATGGACACAGCCGTGGTCAGGGCCCATGT
CTTGAACCACATAATGCTGCAGGTACAGTCGAAGGGGTTATCGTTGATCTGCAGGTGGGA
CAGCGCGGTGAGCGGTTCAAAGGTGCCCTCTGCTAGTGTGTGCAAGCGGTTGTGATTGAG
CTGCAGGGAGCGCAGGGCACGAAGGCTGCGGAAGGCGTCTCGGGGGATGAAGGTCAGCTC
GTTGCTGTCCATCTTGAGCAACTGGAGGGCGCTGAGGTTGTGCAGGTCACTCCAGGCAAA
GTCAGAGATGAGGTTGTGGCTGAGGTCCAGGCTCTTGAGATGGCCCAGAGGGGCCAGGGC
ACCAGCGGCCACTGTGCGGATCTCGTTGTGTGCCAGCCACAGTGACTGCAGCAAGAGCAC
CTCCCTGAAGGCCCCCTCTGGCAGGCTGGGCAGCCTGTTGGCTGACAGACTCAACGTGGT
CACATTGGCCGGGAAGCCGGGAGGCACAGCCTCCAGGTCACGGTAGGCACAGTCGGCAAT
CTGGAAGCCATACTTTTCCCCGCAGTCGCAGGGCTTGGGACAGGCCTGCACCAAGCCCAC
GAGGACCACCCAGCACAGCAAACACAGCTCCTGCATCCTAACTCCTCAGGCTACTCTTTC
GGAGTCAAGCAGAGCCTCTTCTAAGACGGAACCCAAAACAACAAAGGACTGAGTTCGCCC
TGGACAGTCTTCAGGGCAAGGGAAGATGAGGCTCCAGGAGGAAGGACAGCCTGGTCCCTG
CCCCACCTTCAGTCTGCAAGCCTGGGCCTGCCCTTTTCGTCCCGGGACAGGGTGCCTGAG
AAGGTCTGCAGAGAGGAGGCTGCAGGAAGGGAGCCCAGGCAGCCCGTAAACTCCCTCCTT
CCGGCCAAACAACTGCTTCTCTGCAGCAACAAGGACCCGTGTTTCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTGCCGAGCAAGGCAGCGGCAGCAGGCGGTTTAGCCGTGTGCCCTGGAGCACATGGGG
CGAAGTGCAGGTGATGTTATCCTGCTCCGGGATGGACACAGCCGTGGTCAGGGCCCATGT
CTTGAACCACATAATGCTGCAGGTACAGTCGAAGGGGTTATCGTTGATCTGCAGGTGGGA
CAGCGCGGTGAGCGGTTCAAAGGTGCCCTCTGCTAGTGTGTGCAAGCGGTTGTGATTGAG
CTGCAGGGAGCGCAGGGCACGAAGGCTGCGGAAGGCGTCTCGGGGGATGAAGGTCAGCTC
GTTGCTGTCCATCTTGAGCAACTGGAGGGCGCTGAGGTTGTGCAGGTCACTCCAGGCAAA
GTCAGAGATGAGGTTGTGGCTGAGGTCCAGGCTCTTGAGATGGCCCAGAGGGGCCAGGGC
ACCAGCGGCCACTGTGCGGATCTCGTTGTGTGCCAGCCACAGTGACTGCAGCAAGAGCAC
CTCCCTGAAGGCCCCCTCTGGCAGGCTGGGCAGCCTGTTGGCTGACAGACTCAACGTGGT
CACATTGGCCGGGAAGCCGGGAGGCACAGCCTCCAGGTCACGGTAGGCACAGTCGGCAAT
CTGGAAGCCATACTTTTCCCCGCAGTCGCAGGGCTTGGGACAGGCCTGCACCAAGCCCAC
GAGGACCACCCAGCACAGCAAACACAGCTCCTGCATCCTAACTCCTCAGGCTACTCTTTC
GGAGTCAAGCAGAGCCTCTTCTAAGACGGAACCCAAAACAACAAAGGACTGAGTTCGCCC
TGGACAGTCTTCAGGGCAAGGGAAGATGAGGCTCCAGGAGGAAGGACAGCCTGGTCCCTG
CCCCACCTTCAGTCTGCAAGCCTGGGCCTGCCCTTTTCGTCCCGGGACAGGGTGCCTGAG
AAGGTCTGCAGAGAGGAGGCTGCAGGAAGGGAGCCCAGGCAGCCCGTAAACTCCCTCCTT
CCGGCCAAACAACTGCTTCTCTGCAGCAACAAGGACCCGTGTTTCATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55642917|ref|XP_529730.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55642917|ref|XP_529730.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               441-560, - strand, RNAz p=0.931585

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               441-560, - strand, RNAz p=0.931585

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               2-699, gnl|bosTau2|chr21 (23093675-23092978)
               

               
               2-699, gnl|Hg17|chr15 (72254947-72254243)
               

               
               2-699, gnl|Mm7|chr9 (58185749-58186453)
               


               
               706-1008, gnl|bosTau2|chr21 (23092154-23091858)
               

               
               706-1008, gnl|canFam2|chr30 (40324845-40325239)
               

               
               706-1008, gnl|dasNov1|scaffold_186922 (972-1332)
               

               
               706-1008, gnl|echTel1|scaffold_296638 (6526-6142)
               

               
               706-1008, gnl|hg17|chr15 (72252961-72253375)
               

               
               706-1008, gnl|Hg17|chr15 (72253411-72253110)
               

               
               706-1008, gnl|mm7|chr9 (58187607-58187227)
               

               
               706-1008, gnl|monDom2|scaffold_41 (4174895-4174382)
               

               
               706-1008, gnl|oryCun1|scaffold_167122 (3627-3264)
               

               
               706-1008, gnl|panTro1|chr16_random (21365810-21366224)
               

               
               706-1008, gnl|rheMac2|chr7 (52962694-52963102)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-699, gnl|bosTau2|chr21 (23093675-23092978)
               

               
               2-699, gnl|Hg17|chr15 (72254947-72254243)
               

               
               2-699, gnl|Mm7|chr9 (58185749-58186453)
               


               
               706-1008, gnl|bosTau2|chr21 (23092154-23091858)
               

               
               706-1008, gnl|canFam2|chr30 (40324845-40325239)
               

               
               706-1008, gnl|dasNov1|scaffold_186922 (972-1332)
               

               
               706-1008, gnl|echTel1|scaffold_296638 (6526-6142)
               

               
               706-1008, gnl|hg17|chr15 (72252961-72253375)
               

               
               706-1008, gnl|Hg17|chr15 (72253411-72253110)
               

               
               706-1008, gnl|mm7|chr9 (58187607-58187227)
               

               
               706-1008, gnl|monDom2|scaffold_41 (4174895-4174382)
               

               
               706-1008, gnl|oryCun1|scaffold_167122 (3627-3264)
               

               
               706-1008, gnl|panTro1|chr16_random (21365810-21366224)
               

               
               706-1008, gnl|rheMac2|chr7 (52962694-52963102)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               jca (0.11396)

	2-699, gnl\|bosTau2\|chr21 (23093675-23092978)
	2-699, gnl\|Hg17\|chr15 (72254947-72254243)
	2-699, gnl\|Mm7\|chr9 (58185749-58186453)

	706-1008, gnl\|bosTau2\|chr21 (23092154-23091858)
	706-1008, gnl\|canFam2\|chr30 (40324845-40325239)
	706-1008, gnl\|dasNov1\|scaffold_186922 (972-1332)
	706-1008, gnl\|echTel1\|scaffold_296638 (6526-6142)
	706-1008, gnl\|hg17\|chr15 (72252961-72253375)
	706-1008, gnl\|Hg17\|chr15 (72253411-72253110)
	706-1008, gnl\|mm7\|chr9 (58187607-58187227)
	706-1008, gnl\|monDom2\|scaffold_41 (4174895-4174382)
	706-1008, gnl\|oryCun1\|scaffold_167122 (3627-3264)
	706-1008, gnl\|panTro1\|chr16_random (21365810-21366224)
	706-1008, gnl\|rheMac2\|chr7 (52962694-52963102)