Ss1.1-Ova1-OVR010002A06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT GACGCATAAGTCTTTTAATAGAAAAACACGCGTGTAACAGTAGCAACACAGTCTCTCGCG ATCCAGATGGCACTGGGCTTCAGTTCTTCACCTTGGGGGGTGGTCTGTACACACCCACGA CCACAGCGTGGTCTCTTTCGTACGGCTCTAGGGTCAGCTGCTCCTGGGGCTTCATGTTCT CCTGCTGCATCTTTTTCACTTCAGAGGCAAACACGGCCTCAGCAGAGGCTGTGGAGTCAA TGCAGTTGGCCTTAATGGAGATCACAAAGTGTCCTCCATTGCGTAGGAAGGTGTGAGCAT TCAGGGCTACAATCCGAGTCTGGTCTGGCTGGGCCACGTCAGCAAAGATCACATCCACCA TCGCGATGAGCATGCGGTATTTGTGCGGGTGCCGAGCATCTTCGATGACGGGAATGATGT TGGTCCTCTTCTTGGCCAGGTTAATGAGGTCACGGCCGGAACGGTGGGAGAACTCAACTG CATAGACCAGACCGTCCGGGCCCACGATGTCAGAGACGTGGGAGACGGTGGTGCCTGAGG CAGCCCCCAGGTAGAGCACCTTGGCCCCCGGCTTGATGTGGATCTGGTCTACACCGCCCA GGATCGCTGCCGCCAGCTTAGAACGGAAGGGGTTCCAGGCACGGTACTCGATTTTGTCAT CTCCCTCCGAAATCGAAACTCTCTTCTCTCCATAAACAGATTCTCCAGGGACCAGATTCT TGGTGACCAGGGCATCTTCCTTTCCCCGGCAGATGAAGACGCCCTCATGCCGATGGGGCT CCACCATCACATTCTTCCCCGACTGGTTTCCTTTTTTTCCTCCCCGACCACGACCCCGGC TGCCCCCGGACTGGAACCCACCACCTCTTCCGCCGCCGCCGCCGCCTCGGCCTCGGCCCC GAAAGCCCCCGCCCCGGCCTCGGCCTCCGCCGAAGCCTCCTCGGCCTCCGCCGAAGCCCC CTCGGCCTCCGCCTCGACCGCCACGGTCACCAAAGCCCCCTCGGCCACCGAAGCCGCCCC CTCGGGGGCTGAAACCTGGTTTCATAGCGAGCACAGAGGTTCGCTACTCAGTAATCTGAG GCTCTTTCGACTCCACGCGTCCCGGGTTTACGCACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT GACGCATAAGTCTTTTAATAGAAAAACACGCGTGTAACAGTAGCAACACAGTCTCTCGCG ATCCAGATGGCACTGGGCTTCAGTTCTTCACCTTGGGGGGTGGTCTGTACACACCCACGA CCACAGCGTGGTCTCTTTCGTACGGCTCTAGGGTCAGCTGCTCCTGGGGCTTCATGTTCT CCTGCTGCATCTTTTTCACTTCAGAGGCAAACACGGCCTCAGCAGAGGCTGTGGAGTCAA TGCAGTTGGCCTTAATGGAGATCACAAAGTGTCCTCCATTGCGTAGGAAGGTGTGAGCAT TCAGGGCTACAATCCGAGTCTGGTCTGGCTGGGCCACGTCAGCAAAGATCACATCCACCA TCGCGATGAGCATGCGGTATTTGTGCGGGTGCCGAGCATCTTCGATGACGGGAATGATGT TGGTCCTCTTCTTGGCCAGGTTAATGAGGTCACGGCCGGAACGGTGGGAGAACTCAACTG CATAGACCAGACCGTCCGGGCCCACGATGTCAGAGACGTGGGAGACGGTGGTGCCTGAGG CAGCCCCCAGGTAGAGCACCTTGGCCCCCGGCTTGATGTGGATCTGGTCTACACCGCCCA GGATCGCTGCCGCCAGCTTAGAACGGAAGGGGTTCCAGGCACGGTACTCGATTTTGTCAT CTCCCTCCGAAATCGAAACTCTCTTCTCTCCATAAACAGATTCTCCAGGGACCAGATTCT TGGTGACCAGGGCATCTTCCTTTCCCCGGCAGATGAAGACGCCCTCATGCCGATGGGGCT CCACCATCACATTCTTCCCCGACTGGTTTCCTTTTTTTCCTCCCCGACCACGACCCCGGC TGCCCCCGGACTGGAACCCACCACCTCTTCCGCCGCCGCCGCCGCCTCGGCCTCGGCCCC GAAAGCCCCCGCCCCGGCCTCGGCCTCCGCCGAAGCCTCCTCGGCCTCCGCCGAAGCCCC CTCGGCCTCCGCCTCGACCGCCACGGTCACCAAAGCCCCCTCGGCCACCGAAGCCGCCCC CTCGGGGGCTGAAACCTGGTTTCATAGCGAGCACAGAGGTTCGCTACTCAGTAATCTGAG GCTCTTTCGACTCCACGCGTCCCGGGTTTACGCACG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 195-312, + strand, RNAz p=0.935022 | |
| 992-1098, - strand, RNAz p=0.998932 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 195-312, + strand, RNAz p=0.935022 | |
| 992-1098, - strand, RNAz p=0.998932 |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 165-312, gnl|bosTau2|chr18 (46910198-46910345) | |
| 165-312, gnl|canFam2|chr1 (116551824-116551723) | |
| 165-312, gnl|canFam2|chr1 (116551812-116551667) | |
| 165-312, gnl|danRer3|chr16 (37562530-37562675) | |
| 165-312, gnl|danRer3|chrNA (251592968-251593061) | |
| 165-312, gnl|dasNov1|scaffold_31331 (6850-6937) | |
| 165-312, gnl|echTel1|scaffold_322806 (51845-51934) | |
| 165-312, gnl|echTel1|scaffold_322806 (51845-51990) | |
| 165-312, gnl|fr1|chrUn (96502353-96502251) | |
| 165-312, gnl|hg17|chr19 (45017135-45017237) | |
| 165-312, gnl|Hg17|chr19 (45017148-45017295) | |
| 165-312, gnl|hg17|chr4 (184715209-184715352) | |
| 165-312, gnl|mm7|chr17 (6066963-6067108) | |
| 165-312, gnl|mm7|chr7 (25112949-25112854) | |
| 165-312, gnl|Mm7|chr7 (25112941-25112794) | |
| 165-312, gnl|monDom2|scaffold_0 (37213294-37213442) | |
| 165-312, gnl|monDom2|scaffold_139 (1178939-1179041) | |
| 165-312, gnl|oryCun1|scaffold_160486 (10422-10333) | |
| 165-312, gnl|oryCun1|scaffold_160486 (10422-10277) | |
| 165-312, gnl|panTro1|chr20 (41945907-41946009) | |
| 165-312, gnl|panTro1|chr3_random (29692311-29692168) | |
| 165-312, gnl|rheMac2|chr19 (46195738-46195840) | |
| 165-312, gnl|rheMac2|chr19 (46197468-46197615) | |
| 165-312, gnl|rn3|chr1 (83358960-83358865) | |
| 165-312, gnl|rn3|chr1 (3172789-3172934) | |
| 165-312, gnl|tetNig1|chrUn_random (32214638-32214733) | |
| 165-312, gnl|tetNig1|chrUn_random (32214644-32214789) | |
| 165-312, gnl|xenTro1|scaffold_1298 (163685-163790) | |
| 424-557, gnl|bosTau2|chr18 (46912181-46912314) | |
| 424-557, gnl|canFam2|chr1 (116549287-116549145) | |
| 424-557, gnl|canFam2|chr1 (116549278-116549150) | |
| 424-557, gnl|danRer3|chr16 (37562961-37563083) | |
| 424-557, gnl|danRer3|chrNA (251593391-251593530) | |
| 424-557, gnl|echTel1|scaffold_322806 (54135-54277) | |
| 424-557, gnl|echTel1|scaffold_322806 (54144-54269) | |
| 424-557, gnl|fr1|chrUn (96501591-96501452) | |
| 424-557, gnl|hg17|chr19 (45020186-45020328) | |
| 424-557, gnl|Hg17|chr19 (45020191-45020324) | |
| 424-557, gnl|hg17|chr4 (184715465-184715592) | |
| 424-557, gnl|loxAfr1|scaffold_56430 (38007-37865) | |
| 424-557, gnl|loxAfr1|scaffold_56430 (37998-37875) | |
| 424-557, gnl|mm7|chr17 (6067226-6067354) | |
| 424-557, gnl|mm7|chr7 (25111180-25111038) | |
| 424-557, gnl|Mm7|chr7 (25111173-25111040) | |
| 424-557, gnl|monDom2|scaffold_0 (37213560-37213690) | |
| 424-557, gnl|monDom2|scaffold_139 (1179821-1179963) | |
| 424-557, gnl|oryCun1|scaffold_152961 (195-337) | |
| 424-557, gnl|oryCun1|scaffold_160486 (10159-10031) | |
| 424-557, gnl|panTro1|chr20 (41951214-41951356) | |
| 424-557, gnl|panTro1|chr3_random (29692055-29691928) | |
| 424-557, gnl|rheMac2|chr19 (46199030-46199138) | |
| 424-557, gnl|rheMac2|chr19 (46199029-46199133) | |
| 424-557, gnl|rn3|chr1 (83357178-83357036) | |
| 424-557, gnl|rn3|chr1 (3173019-3173144) | |
| 424-557, gnl|tetNig1|chrUn_random (32215561-32215700) | |
| 424-557, gnl|tetNig1|chrUn_random (32215573-32215695) | |
| 424-557, gnl|xenTro1|scaffold_1298 (164776-164918) | |
| 558-728, gnl|bosTau2|chr18 (46915222-46915392) | |
| 558-728, gnl|canFam2|chr1 (116548253-116548123) | |
| 558-728, gnl|danRer3|chr16 (37563800-37563885) | |
| 558-728, gnl|echTel1|scaffold_322806 (54834-54920) | |
| 558-728, gnl|Hg17|chr19 (45021516-45021686) | |
| 558-728, gnl|hg17|chr4 (184715593-184715677) | |
| 558-728, gnl|loxAfr1|scaffold_56430 (37197-37113) | |
| 558-728, gnl|mm7|chr17 (6067355-6067485) | |
| 558-728, gnl|Mm7|chr7 (25109922-25109752) | |
| 558-728, gnl|monDom2|scaffold_0 (37213691-37213777) | |
| 558-728, gnl|oryCun1|scaffold_160486 (10030-9900) | |
| 558-728, gnl|panTro1|chr3_random (29691927-29691843) | |
| 558-728, gnl|rheMac2|chr19 (46200345-46200475) | |
| 558-728, gnl|rn3|chr1 (3173145-3173275) | |
| 558-728, gnl|tetNig1|chrUn_random (32215926-32216011) | |
| 876-1098, gnl|bosTau2|chr18 (46916707-46916931) | |
| 876-1098, gnl|Hg17|chr19 (45023034-45023270) | |
| 876-1098, gnl|Mm7|chr7 (25108640-25108399) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 165-312, gnl|bosTau2|chr18 (46910198-46910345) | |
| 165-312, gnl|canFam2|chr1 (116551824-116551723) | |
| 165-312, gnl|canFam2|chr1 (116551812-116551667) | |
| 165-312, gnl|danRer3|chr16 (37562530-37562675) | |
| 165-312, gnl|danRer3|chrNA (251592968-251593061) | |
| 165-312, gnl|dasNov1|scaffold_31331 (6850-6937) | |
| 165-312, gnl|echTel1|scaffold_322806 (51845-51934) | |
| 165-312, gnl|echTel1|scaffold_322806 (51845-51990) | |
| 165-312, gnl|fr1|chrUn (96502353-96502251) | |
| 165-312, gnl|hg17|chr19 (45017135-45017237) | |
| 165-312, gnl|Hg17|chr19 (45017148-45017295) | |
| 165-312, gnl|hg17|chr4 (184715209-184715352) | |
| 165-312, gnl|mm7|chr17 (6066963-6067108) | |
| 165-312, gnl|mm7|chr7 (25112949-25112854) | |
| 165-312, gnl|Mm7|chr7 (25112941-25112794) | |
| 165-312, gnl|monDom2|scaffold_0 (37213294-37213442) | |
| 165-312, gnl|monDom2|scaffold_139 (1178939-1179041) | |
| 165-312, gnl|oryCun1|scaffold_160486 (10422-10333) | |
| 165-312, gnl|oryCun1|scaffold_160486 (10422-10277) | |
| 165-312, gnl|panTro1|chr20 (41945907-41946009) | |
| 165-312, gnl|panTro1|chr3_random (29692311-29692168) | |
| 165-312, gnl|rheMac2|chr19 (46195738-46195840) | |
| 165-312, gnl|rheMac2|chr19 (46197468-46197615) | |
| 165-312, gnl|rn3|chr1 (83358960-83358865) | |
| 165-312, gnl|rn3|chr1 (3172789-3172934) | |
| 165-312, gnl|tetNig1|chrUn_random (32214638-32214733) | |
| 165-312, gnl|tetNig1|chrUn_random (32214644-32214789) | |
| 165-312, gnl|xenTro1|scaffold_1298 (163685-163790) | |
| 424-557, gnl|bosTau2|chr18 (46912181-46912314) | |
| 424-557, gnl|canFam2|chr1 (116549287-116549145) | |
| 424-557, gnl|canFam2|chr1 (116549278-116549150) | |
| 424-557, gnl|danRer3|chr16 (37562961-37563083) | |
| 424-557, gnl|danRer3|chrNA (251593391-251593530) | |
| 424-557, gnl|echTel1|scaffold_322806 (54135-54277) | |
| 424-557, gnl|echTel1|scaffold_322806 (54144-54269) | |
| 424-557, gnl|fr1|chrUn (96501591-96501452) | |
| 424-557, gnl|hg17|chr19 (45020186-45020328) | |
| 424-557, gnl|Hg17|chr19 (45020191-45020324) | |
| 424-557, gnl|hg17|chr4 (184715465-184715592) | |
| 424-557, gnl|loxAfr1|scaffold_56430 (38007-37865) | |
| 424-557, gnl|loxAfr1|scaffold_56430 (37998-37875) | |
| 424-557, gnl|mm7|chr17 (6067226-6067354) | |
| 424-557, gnl|mm7|chr7 (25111180-25111038) | |
| 424-557, gnl|Mm7|chr7 (25111173-25111040) | |
| 424-557, gnl|monDom2|scaffold_0 (37213560-37213690) | |
| 424-557, gnl|monDom2|scaffold_139 (1179821-1179963) | |
| 424-557, gnl|oryCun1|scaffold_152961 (195-337) | |
| 424-557, gnl|oryCun1|scaffold_160486 (10159-10031) | |
| 424-557, gnl|panTro1|chr20 (41951214-41951356) | |
| 424-557, gnl|panTro1|chr3_random (29692055-29691928) | |
| 424-557, gnl|rheMac2|chr19 (46199030-46199138) | |
| 424-557, gnl|rheMac2|chr19 (46199029-46199133) | |
| 424-557, gnl|rn3|chr1 (83357178-83357036) | |
| 424-557, gnl|rn3|chr1 (3173019-3173144) | |
| 424-557, gnl|tetNig1|chrUn_random (32215561-32215700) | |
| 424-557, gnl|tetNig1|chrUn_random (32215573-32215695) | |
| 424-557, gnl|xenTro1|scaffold_1298 (164776-164918) | |
| 558-728, gnl|bosTau2|chr18 (46915222-46915392) | |
| 558-728, gnl|canFam2|chr1 (116548253-116548123) | |
| 558-728, gnl|danRer3|chr16 (37563800-37563885) | |
| 558-728, gnl|echTel1|scaffold_322806 (54834-54920) | |
| 558-728, gnl|Hg17|chr19 (45021516-45021686) | |
| 558-728, gnl|hg17|chr4 (184715593-184715677) | |
| 558-728, gnl|loxAfr1|scaffold_56430 (37197-37113) | |
| 558-728, gnl|mm7|chr17 (6067355-6067485) | |
| 558-728, gnl|Mm7|chr7 (25109922-25109752) | |
| 558-728, gnl|monDom2|scaffold_0 (37213691-37213777) | |
| 558-728, gnl|oryCun1|scaffold_160486 (10030-9900) | |
| 558-728, gnl|panTro1|chr3_random (29691927-29691843) | |
| 558-728, gnl|rheMac2|chr19 (46200345-46200475) | |
| 558-728, gnl|rn3|chr1 (3173145-3173275) | |
| 558-728, gnl|tetNig1|chrUn_random (32215926-32216011) | |
| 876-1098, gnl|bosTau2|chr18 (46916707-46916931) | |
| 876-1098, gnl|Hg17|chr19 (45023034-45023270) | |
| 876-1098, gnl|Mm7|chr7 (25108640-25108399) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| lnt (0.426925) | |
| nep (0.36785) | |
| fty (0.351679) | |
| ill (0.351185) | |
| mcp (0.341297) | |
| nco (0.323468) | |
| csp (0.322373) | |
| cag (0.302389) | |
| cov (0.264306) | |
| pgl (0.236967) | |
| med (0.232504) | |
| mas (0.210305) | |
| cty (0.20816) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| col (0.195008) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| pty (0.142714) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.426925) | |
| nep (0.36785) | |
| fty (0.351679) | |
| ill (0.351185) | |
| mcp (0.341297) | |
| nco (0.323468) | |
| csp (0.322373) | |
| cag (0.302389) | |
| cov (0.264306) | |
| pgl (0.236967) | |
| med (0.232504) | |
| mas (0.210305) | |
| cty (0.20816) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| col (0.195008) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| pty (0.142714) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| eje (0.0988338) |