Ss1.1-Ova1-OVR010002G07.5
|
GGCTCGGCCGTCAGCGCGGCCACCGCGCGGTCCCTCTTGGCCGGGTCGGCGGCGGGGCGG
GGCGCCGCGTTCTTGCCGGGGTGTCCGGAGTCGCGGGAGCCGAGCCGGAGGAGCGGGATG
GCGGCGGCAGCTGCGGGCGAGGCGCGCCGGGTGCTGGTGTACGGCGGCCGGGGCGCCCTG
GGCTCCCGATGCGTGCAGGCGTTCCGGGCCCGCAACTGGTGGGTCGCCAGCATCGACGTG
GTGGAGAATGAAGAGGCCAGTGCCAATGTCGTCGTTAAAATGACAGACTCGTTTACGGAG
CAGGCCGACCAGGTGACTGCTGAGGTTGGAAAGCTCTTGGGTGCAGAGAAGGTGGACGCC
ATCCTTTGTGTGGCCGGAGGATGGGCTGGGGGCAATGCCAAGTCCAAGTCTCTCTTTAAA
AACTGTGACCTGATGTGGAAGCAGAGCATGTGGACGTCAACCATCTCCAGCCACCTGGCC
ACCAAGCATCTCAAGGAAGGAGGCCTCCTGACCTTGGCCGGGGCCAAGGCCGCCCTGGAT
GGGACGCCCGGGATGATCGGCTATGGCATGGCCAAGGGCGCCGTCCACCAGCTCTGCCAG
AGCCTGGCCGGGAAGGACAGCGGCATGCCATCCGGGGCTGCCGCCATCGCCGTGCTCCCG
GTCACCCTGGACACGCCCTTGAACAGGAAGTCGATGCCCCACGCGGACTTCAGCTCCTGG
ACGCCCTTAGAATTCCTGGTCGAAACCTTCCACGACTGGATCATAGAAAAAAACCGACCA
AGCTCAGGCAGCCTCATCCAGGTGGTGACCACGCAGGGAAAGACAGAGCTCACCCCGGCG
TATTTTTAAGCTTCATTTTGTTGTCTGTGAGGGGCCTGTCAGAGAAGTCATTAATCCATC
CGTGGGGCCCCGCCCGGCCCTGCCTTTTCTGTAATCCTGTTCGTGGTAGGAGATAGTCCT
ATTTGTCTCCCACCTCATGTGCATTTGTTCTCCCAGGACAGTGGCAAAGGTTTAAGTGAA
ATAAAAACACGTGAGGCCCACAGCACGGTCAGTTGGTGTCAACCACGTAATTGAGGCCTC
AGGACGGCCCCCTCTGTGTCCACGTTGAATTGCATTTGTGATGCTGTTTATGTGTCCCCG
ATGGTGGCCGTCCACCTGTCTAGGTCAGAGATTTGCTGGGATGGGGGAGGTTTGGAGCTT
GAGTTATTTTTGAATGTTATGTTCATGTGACTGATGTAGTTTTTGGAGCTTCGAAGTAAA
CTGCCTTAAAACGCCTCCTGTGCTGTAAGCCAAACCCTGTGGACTCTGTTAAGATATCTT
TTTCCTGTGCAGTCGCCACGTGCTCAAGAGAACTACTTGTGATTGTTTGGAATTTAACTT
CCTAATAAATGCCCTTCATTTATTAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCTCGGCCGTCAGCGCGGCCACCGCGCGGTCCCTCTTGGCCGGGTCGGCGGCGGGGCGG
GGCGCCGCGTTCTTGCCGGGGTGTCCGGAGTCGCGGGAGCCGAGCCGGAGGAGCGGGATG
GCGGCGGCAGCTGCGGGCGAGGCGCGCCGGGTGCTGGTGTACGGCGGCCGGGGCGCCCTG
GGCTCCCGATGCGTGCAGGCGTTCCGGGCCCGCAACTGGTGGGTCGCCAGCATCGACGTG
GTGGAGAATGAAGAGGCCAGTGCCAATGTCGTCGTTAAAATGACAGACTCGTTTACGGAG
CAGGCCGACCAGGTGACTGCTGAGGTTGGAAAGCTCTTGGGTGCAGAGAAGGTGGACGCC
ATCCTTTGTGTGGCCGGAGGATGGGCTGGGGGCAATGCCAAGTCCAAGTCTCTCTTTAAA
AACTGTGACCTGATGTGGAAGCAGAGCATGTGGACGTCAACCATCTCCAGCCACCTGGCC
ACCAAGCATCTCAAGGAAGGAGGCCTCCTGACCTTGGCCGGGGCCAAGGCCGCCCTGGAT
GGGACGCCCGGGATGATCGGCTATGGCATGGCCAAGGGCGCCGTCCACCAGCTCTGCCAG
AGCCTGGCCGGGAAGGACAGCGGCATGCCATCCGGGGCTGCCGCCATCGCCGTGCTCCCG
GTCACCCTGGACACGCCCTTGAACAGGAAGTCGATGCCCCACGCGGACTTCAGCTCCTGG
ACGCCCTTAGAATTCCTGGTCGAAACCTTCCACGACTGGATCATAGAAAAAAACCGACCA
AGCTCAGGCAGCCTCATCCAGGTGGTGACCACGCAGGGAAAGACAGAGCTCACCCCGGCG
TATTTTTAAGCTTCATTTTGTTGTCTGTGAGGGGCCTGTCAGAGAAGTCATTAATCCATC
CGTGGGGCCCCGCCCGGCCCTGCCTTTTCTGTAATCCTGTTCGTGGTAGGAGATAGTCCT
ATTTGTCTCCCACCTCATGTGCATTTGTTCTCCCAGGACAGTGGCAAAGGTTTAAGTGAA
ATAAAAACACGTGAGGCCCACAGCACGGTCAGTTGGTGTCAACCACGTAATTGAGGCCTC
AGGACGGCCCCCTCTGTGTCCACGTTGAATTGCATTTGTGATGCTGTTTATGTGTCCCCG
ATGGTGGCCGTCCACCTGTCTAGGTCAGAGATTTGCTGGGATGGGGGAGGTTTGGAGCTT
GAGTTATTTTTGAATGTTATGTTCATGTGACTGATGTAGTTTTTGGAGCTTCGAAGTAAA
CTGCCTTAAAACGCCTCCTGTGCTGTAAGCCAAACCCTGTGGACTCTGTTAAGATATCTT
TTTCCTGTGCAGTCGCCACGTGCTCAAGAGAACTACTTGTGATTGTTTGGAATTTAACTT
CCTAATAAATGCCCTTCATTTATTAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
547-660, gnl|bosTau2|chr6 (68367303-68367416) |
|
547-660, gnl|canFam2|chr3 (65806863-65806730) |
|
547-660, gnl|danRer3|chr1 (19714722-19714601) |
|
547-660, gnl|echTel1|scaffold_287217 (12109-11979) |
|
547-660, gnl|fr1|chrUn (235781050-235780916) |
|
547-660, gnl|hg17|chr4 (17170115-17170248) |
|
547-660, gnl|Hg17|chr4 (17170236-17170123) |
|
547-660, gnl|mm7|chr5 (44761537-44761669) |
|
547-660, gnl|Mm7|chr5 (44761658-44761545) |
|
547-660, gnl|monDom2|scaffold_10 (22191049-22190917) |
|
547-660, gnl|oryCun1|scaffold_214322 (123325-123195) |
|
547-660, gnl|panTro1|chr3 (17517831-17517964) |
|
547-660, gnl|rheMac2|chr5 (12314274-12314407) |
|
547-660, gnl|rn3|chr14 (70752810-70752676) |
|
547-660, gnl|tetNig1|chr20 (1761396-1761260) |
|
547-660, gnl|xenTro1|scaffold_158 (796429-796548) |
| |
|
744-1403, gnl|bosTau2|chr6 (68371608-68372260) |
|
744-1403, gnl|Hg17|chr4 (17165128-17164430) |
|
744-1403, gnl|Mm7|chr5 (44756939-44756314) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
547-660, gnl|bosTau2|chr6 (68367303-68367416) |
|
547-660, gnl|canFam2|chr3 (65806863-65806730) |
|
547-660, gnl|danRer3|chr1 (19714722-19714601) |
|
547-660, gnl|echTel1|scaffold_287217 (12109-11979) |
|
547-660, gnl|fr1|chrUn (235781050-235780916) |
|
547-660, gnl|hg17|chr4 (17170115-17170248) |
|
547-660, gnl|Hg17|chr4 (17170236-17170123) |
|
547-660, gnl|mm7|chr5 (44761537-44761669) |
|
547-660, gnl|Mm7|chr5 (44761658-44761545) |
|
547-660, gnl|monDom2|scaffold_10 (22191049-22190917) |
|
547-660, gnl|oryCun1|scaffold_214322 (123325-123195) |
|
547-660, gnl|panTro1|chr3 (17517831-17517964) |
|
547-660, gnl|rheMac2|chr5 (12314274-12314407) |
|
547-660, gnl|rn3|chr14 (70752810-70752676) |
|
547-660, gnl|tetNig1|chr20 (1761396-1761260) |
|
547-660, gnl|xenTro1|scaffold_158 (796429-796548) |
| |
|
744-1403, gnl|bosTau2|chr6 (68371608-68372260) |
|
744-1403, gnl|Hg17|chr4 (17165128-17164430) |
|
744-1403, gnl|Mm7|chr5 (44756939-44756314) |
|
fce (0.543183) |
|
cki (0.495704) |
|
pgl (0.473934) |
|
cli (0.458435) |
|
eli (0.455443) |
|
fbs (0.350693) |
|
hyp (0.285673) |
|
cga (0.279096) |
|
ova (0.258264) |
|
sug (0.254582) |
|
eep (0.245128) |
|
cly (0.241284) |
|
spc (0.226732) |
|
nlu (0.191681) |
|
mgm (0.180343) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
cje (0.165235) |
|
lun (0.150489) |
|
fat (0.147427) |
|
spl (0.143184) |
|
csk (0.140746) |
|
cst (0.140036) |
|
nca (0.136874) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
kid (0.129735) |
|
cbr (0.127975) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
cty (0.10408) |
|
eje (0.0988338) |
|
fce (0.543183) |
|
cki (0.495704) |
|
pgl (0.473934) |
|
cli (0.458435) |
|
eli (0.455443) |
|
fbs (0.350693) |
|
hyp (0.285673) |
|
cga (0.279096) |
|
ova (0.258264) |
|
sug (0.254582) |
|
eep (0.245128) |
|
cly (0.241284) |
|
spc (0.226732) |
|
nlu (0.191681) |
|
mgm (0.180343) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
cje (0.165235) |
|
lun (0.150489) |
|
fat (0.147427) |
|
spl (0.143184) |
|
csk (0.140746) |
|
cst (0.140036) |
|
nca (0.136874) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
kid (0.129735) |
|
cbr (0.127975) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
cty (0.10408) |
|
eje (0.0988338) |
