Ss1.1-Ova1-OVR010002H06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATGCTGACTTCCCCGTTAGTCCCCAGCCCAGAGACTTCGTGTGCTCCTGTGGCCTCCAG GACAGTGTGTGCTGCCTCTCTTTATGTCCTAACCCCCACCCCACCCCGCCCTATGCAGTG AAATGGAGACCTTGGCACTTAAGGGAGCCCCATGGCACCTGCCCAGCCCCACCTGAGCCC ATCTTGACAAAGTCCTAGGCTCCATGGAGCCACCACGGGGCCCCCCTGCCAACGGGGCCG AGCCGTCCCGGGCAGTGGGCACCGTCAAAGTGTACCTGCCCAACAAGCAGCGCACGGTGG TGACTGTCCGGGATGGCATGAGTGTCTACGACTCTCTGGACAAGGCCCTCAAGGTGCGAG GTCTCAATCAGGATTGCTGCGTGGTCTACCGGCTCATCAAGGGGCGAAAGACAGTCACCG CCTGGGACACGGCCATTGCCCCCCTGGATGGCGAGGAGCTCATTGTGGAGGTCCTCGAAG ATGTCCCCCTGACCATGCACAATTTTGTACGGAAGACATTCTTCAGCCTGGCCTTTTGTG ACTTCTGCCTTAAGTTTCTGTTCCATGGCTTCCGCTGCCAAACCTGTGGATACAAGTTCC ACCAGCATTGTTCCTCCAAGGTCCCCACAGTTTGTGTCGACATGAGTACCAATCGCCGAC AGTTCTACCACAGTGTCCAGGATTTGTCCGGAGGCTCCAGACAGCATGAGACTCCCTCGA ACCGCCCCCTGAATGAGCCGCTAACCCCTCAGGGTCCCAGCTCCTGCACCCAGCACCGCG ACCCTGAGCACTTCCCCTTCCCTGCCCCGGCCAATGCCCCCCTGCAGCGCATCCGCTCCA CGTCCACCCCCAACGTCCACATGGTCAGCACCACCGCCCCCATGGACTCCGGCCTGGTCC AGCTCACTGCCCAGAGTTTCAACACTGATGCTGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATGCTGACTTCCCCGTTAGTCCCCAGCCCAGAGACTTCGTGTGCTCCTGTGGCCTCCAG GACAGTGTGTGCTGCCTCTCTTTATGTCCTAACCCCCACCCCACCCCGCCCTATGCAGTG AAATGGAGACCTTGGCACTTAAGGGAGCCCCATGGCACCTGCCCAGCCCCACCTGAGCCC ATCTTGACAAAGTCCTAGGCTCCATGGAGCCACCACGGGGCCCCCCTGCCAACGGGGCCG AGCCGTCCCGGGCAGTGGGCACCGTCAAAGTGTACCTGCCCAACAAGCAGCGCACGGTGG TGACTGTCCGGGATGGCATGAGTGTCTACGACTCTCTGGACAAGGCCCTCAAGGTGCGAG GTCTCAATCAGGATTGCTGCGTGGTCTACCGGCTCATCAAGGGGCGAAAGACAGTCACCG CCTGGGACACGGCCATTGCCCCCCTGGATGGCGAGGAGCTCATTGTGGAGGTCCTCGAAG ATGTCCCCCTGACCATGCACAATTTTGTACGGAAGACATTCTTCAGCCTGGCCTTTTGTG ACTTCTGCCTTAAGTTTCTGTTCCATGGCTTCCGCTGCCAAACCTGTGGATACAAGTTCC ACCAGCATTGTTCCTCCAAGGTCCCCACAGTTTGTGTCGACATGAGTACCAATCGCCGAC AGTTCTACCACAGTGTCCAGGATTTGTCCGGAGGCTCCAGACAGCATGAGACTCCCTCGA ACCGCCCCCTGAATGAGCCGCTAACCCCTCAGGGTCCCAGCTCCTGCACCCAGCACCGCG ACCCTGAGCACTTCCCCTTCCCTGCCCCGGCCAATGCCCCCCTGCAGCGCATCCGCTCCA CGTCCACCCCCAACGTCCACATGGTCAGCACCACCGCCCCCATGGACTCCGGCCTGGTCC AGCTCACTGCCCAGAGTTTCAACACTGATGCTGCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 144-303, - strand, RNAz p=0.915548 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 144-303, - strand, RNAz p=0.915548 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 3-143, gnl|bosTau2|chrX (25472935-25473078) | |
| 3-143, gnl|canFam2|chrX (41128771-41128877) | |
| 3-143, gnl|dasNov1|scaffold_59328 (11899-11795) | |
| 3-143, gnl|echTel1|scaffold_100076 (3284-3184) | |
| 3-143, gnl|hg17|chrX (47178223-47178322) | |
| 3-143, gnl|Hg17|chrX (47178226-47178359) | |
| 3-143, gnl|mm7|chrX (19282791-19282868) | |
| 3-143, gnl|oryCun1|scaffold_112236 (5103-5020) | |
| 3-143, gnl|panTro1|chrX (48761987-48762086) | |
| 3-143, gnl|rheMac2|chrX (45384400-45384499) | |
| 3-143, gnl|rn3|chrX (12573078-12573000) | |
| 144-303, gnl|bosTau2|chrX (25473223-25473382) | |
| 144-303, gnl|Hg17|chrX (47178561-47178720) | |
| 144-303, gnl|Mm7|chrX (19283076-19283236) | |
| 507-663, gnl|bosTau2|chrX (25474597-25474753) | |
| 507-663, gnl|canFam2|chrX (41130508-41130665) | |
| 507-663, gnl|danRer3|chr11 (1037915-1037758) | |
| 507-663, gnl|dasNov1|scaffold_59328 (10270-10113) | |
| 507-663, gnl|echTel1|scaffold_100076 (1451-1294) | |
| 507-663, gnl|fr1|chrUn (116894065-116894222) | |
| 507-663, gnl|hg17|chrX (47180635-47180792) | |
| 507-663, gnl|Hg17|chrX (47180638-47180794) | |
| 507-663, gnl|loxAfr1|scaffold_152767 (4297-4140) | |
| 507-663, gnl|mm7|chrX (19284805-19284962) | |
| 507-663, gnl|Mm7|chrX (19284808-19284964) | |
| 507-663, gnl|monDom2|scaffold_134 (598008-597855) | |
| 507-663, gnl|oryCun1|scaffold_112236 (3362-3205) | |
| 507-663, gnl|rheMac2|chrX (45387130-45387287) | |
| 507-663, gnl|rn3|chrX (12571174-12571017) | |
| 507-663, gnl|tetNig1|chr9 (7020905-7021062) | |
| 507-663, gnl|xenTro1|scaffold_2853 (16233-16393) | |
| 757-902, gnl|bosTau2|chrX (25476391-25476536) | |
| 757-902, gnl|Hg17|chrX (47182288-47182433) | |
| 757-902, gnl|Mm7|chrX (19286464-19286609) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-143, gnl|bosTau2|chrX (25472935-25473078) | |
| 3-143, gnl|canFam2|chrX (41128771-41128877) | |
| 3-143, gnl|dasNov1|scaffold_59328 (11899-11795) | |
| 3-143, gnl|echTel1|scaffold_100076 (3284-3184) | |
| 3-143, gnl|hg17|chrX (47178223-47178322) | |
| 3-143, gnl|Hg17|chrX (47178226-47178359) | |
| 3-143, gnl|mm7|chrX (19282791-19282868) | |
| 3-143, gnl|oryCun1|scaffold_112236 (5103-5020) | |
| 3-143, gnl|panTro1|chrX (48761987-48762086) | |
| 3-143, gnl|rheMac2|chrX (45384400-45384499) | |
| 3-143, gnl|rn3|chrX (12573078-12573000) | |
| 144-303, gnl|bosTau2|chrX (25473223-25473382) | |
| 144-303, gnl|Hg17|chrX (47178561-47178720) | |
| 144-303, gnl|Mm7|chrX (19283076-19283236) | |
| 507-663, gnl|bosTau2|chrX (25474597-25474753) | |
| 507-663, gnl|canFam2|chrX (41130508-41130665) | |
| 507-663, gnl|danRer3|chr11 (1037915-1037758) | |
| 507-663, gnl|dasNov1|scaffold_59328 (10270-10113) | |
| 507-663, gnl|echTel1|scaffold_100076 (1451-1294) | |
| 507-663, gnl|fr1|chrUn (116894065-116894222) | |
| 507-663, gnl|hg17|chrX (47180635-47180792) | |
| 507-663, gnl|Hg17|chrX (47180638-47180794) | |
| 507-663, gnl|loxAfr1|scaffold_152767 (4297-4140) | |
| 507-663, gnl|mm7|chrX (19284805-19284962) | |
| 507-663, gnl|Mm7|chrX (19284808-19284964) | |
| 507-663, gnl|monDom2|scaffold_134 (598008-597855) | |
| 507-663, gnl|oryCun1|scaffold_112236 (3362-3205) | |
| 507-663, gnl|rheMac2|chrX (45387130-45387287) | |
| 507-663, gnl|rn3|chrX (12571174-12571017) | |
| 507-663, gnl|tetNig1|chr9 (7020905-7021062) | |
| 507-663, gnl|xenTro1|scaffold_2853 (16233-16393) | |
| 757-902, gnl|bosTau2|chrX (25476391-25476536) | |
| 757-902, gnl|Hg17|chrX (47182288-47182433) | |
| 757-902, gnl|Mm7|chrX (19286464-19286609) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) | |
| ese (0.126502) | |
| cty (0.10408) |