Ss1.1-Ova1-OVR010002H09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTATTTGAGTTGGAATCCAAGTCTTTTTAAAGAATCAACGTGTATTCACAGTACTTGG GATGCTAAGCAAGGACCTGTGAAAGATGCCTATAGCCTGGCCAACAACCCCCAGTACAAG TTGGAGGTGCAGTGTCCACAAGGCGGCGCTGCAGTTTGGGTTTTGCTTAGTAGACACATA ACGGACAAGGATGACTTTGCAAATAATCGAGAATTTATCACAATGGTCGTATACAAGACT GATGGGAAAAAAGTTTATTACCCAGCTGACCCACCTCCATACATTGATGGGATTCGAATT AACAGCCCTCATTATTTGACTAAGATAAAGCTAACCACACCTGGGACCCATACCTTTACA TTAGTGGTTTCTCAGTATGAAAAACAGAACACAATCCATTACACAGTCCGGGTATACTCA GCGTGCAGCTTTACTTTTTCAAAAATTCCTTCACCATACACCGTATCAAAACAGATTAGT GGAAAGTGGAGTGGTCAGAGTGCTGGAGGATGTGGAAATTTCCAAGAGACTCATAAAAAT AACCCCATTTACCAATTCCACATAGAAAAGTCTGGGCCGCTGCTGATCGAACTAAGAGGA CCAAGGCAATACAGTGTTGGGTTTGAAGTTGTAACTGTTTCTGTGGTGGGAGACCCCGGT CCTCACGGCTTCCAGAGGAAATCTAGTGGTGACTACAGGTGTGGCTTTTGCTACCTGGAG CTGGAGAGCATCCCAGCTGGGATCTACAACATCATTCCCAGCACTTTTTTACCTAAACAA GAAGGACCCTTTTTCTTGGACTTTAATAGTGTTATCCCCATCAAGACAACACAACTGCAG TGATGAAGGAATCAGAGCAGTTGCTGAATTTTAAACTTGCCAAACATCAATCCTTCAAAT GAGGACGCACACCTCTGGGACACTGAACAGTCAGAACAGGATGAAATCTCTCAAAATGTT CCTGTGGAATCTGGTGCTGAAATCAGGGTGTTTGGTGAGAACGGAGTGTAGTCACAGTTA CCTGCAGTCACTTAGAAGTACCATTTATGCGGTTTTGTGTATACATGGAGTGGGCTTGCA TTTAGGGCCACATTGTATAAAAAAATGGAGGCGATTAAAGATTAGACTCAGTCATGCACT GAGCTAGATGCCCTTGTGAAGAGGGAACTGAGACCAGACGAGGAGAGTGAGGGATGTAGC TCATTTGAGTGGAACAGGAGGCCAGGACTATAGTCTGAGATAGTTACACAATGTTCGTGT TTCGGGCAGGGCATGTTTAAAGGTGAGCCTGCTTGTGTTGTGGCTCTACTGTACACCCTG GGCATCTGGTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTATTTGAGTTGGAATCCAAGTCTTTTTAAAGAATCAACGTGTATTCACAGTACTTGG GATGCTAAGCAAGGACCTGTGAAAGATGCCTATAGCCTGGCCAACAACCCCCAGTACAAG TTGGAGGTGCAGTGTCCACAAGGCGGCGCTGCAGTTTGGGTTTTGCTTAGTAGACACATA ACGGACAAGGATGACTTTGCAAATAATCGAGAATTTATCACAATGGTCGTATACAAGACT GATGGGAAAAAAGTTTATTACCCAGCTGACCCACCTCCATACATTGATGGGATTCGAATT AACAGCCCTCATTATTTGACTAAGATAAAGCTAACCACACCTGGGACCCATACCTTTACA TTAGTGGTTTCTCAGTATGAAAAACAGAACACAATCCATTACACAGTCCGGGTATACTCA GCGTGCAGCTTTACTTTTTCAAAAATTCCTTCACCATACACCGTATCAAAACAGATTAGT GGAAAGTGGAGTGGTCAGAGTGCTGGAGGATGTGGAAATTTCCAAGAGACTCATAAAAAT AACCCCATTTACCAATTCCACATAGAAAAGTCTGGGCCGCTGCTGATCGAACTAAGAGGA CCAAGGCAATACAGTGTTGGGTTTGAAGTTGTAACTGTTTCTGTGGTGGGAGACCCCGGT CCTCACGGCTTCCAGAGGAAATCTAGTGGTGACTACAGGTGTGGCTTTTGCTACCTGGAG CTGGAGAGCATCCCAGCTGGGATCTACAACATCATTCCCAGCACTTTTTTACCTAAACAA GAAGGACCCTTTTTCTTGGACTTTAATAGTGTTATCCCCATCAAGACAACACAACTGCAG TGATGAAGGAATCAGAGCAGTTGCTGAATTTTAAACTTGCCAAACATCAATCCTTCAAAT GAGGACGCACACCTCTGGGACACTGAACAGTCAGAACAGGATGAAATCTCTCAAAATGTT CCTGTGGAATCTGGTGCTGAAATCAGGGTGTTTGGTGAGAACGGAGTGTAGTCACAGTTA CCTGCAGTCACTTAGAAGTACCATTTATGCGGTTTTGTGTATACATGGAGTGGGCTTGCA TTTAGGGCCACATTGTATAAAAAAATGGAGGCGATTAAAGATTAGACTCAGTCATGCACT GAGCTAGATGCCCTTGTGAAGAGGGAACTGAGACCAGACGAGGAGAGTGAGGGATGTAGC TCATTTGAGTGGAACAGGAGGCCAGGACTATAGTCTGAGATAGTTACACAATGTTCGTGT TTCGGGCAGGGCATGTTTAAAGGTGAGCCTGCTTGTGTTGTGGCTCTACTGTACACCCTG GGCATCTGGTCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 52-170, - strand, RNAz p=0.605098 | |
| 729-848, - strand, RNAz p=0.759651 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 52-170, - strand, RNAz p=0.605098 | |
| 729-848, - strand, RNAz p=0.759651 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 52-190, gnl|bosTau2|chr1 (98666693-98666831) | |
| 52-190, gnl|Hg17|chr3 (15257962-15258100) | |
| 52-190, gnl|Mm7|chr14 (28795101-28795239) | |
| 253-414, gnl|bosTau2|chr1 (98670141-98670301) | |
| 253-414, gnl|canFam2|chr23 (30394840-30394663) | |
| 253-414, gnl|danRer3|chrNA (14697123-14696928) | |
| 253-414, gnl|dasNov1|scaffold_7748 (9479-9298) | |
| 253-414, gnl|echTel1|scaffold_115587 (521-699) | |
| 253-414, gnl|fr1|chrUn (191274669-191274493) | |
| 253-414, gnl|galGal2|chr2 (40600753-40600590) | |
| 253-414, gnl|hg17|chr3 (15262007-15262188) | |
| 253-414, gnl|Hg17|chr3 (15262025-15262185) | |
| 253-414, gnl|loxAfr1|scaffold_125120 (7255-7435) | |
| 253-414, gnl|mm7|chr14 (28797676-28797854) | |
| 253-414, gnl|Mm7|chr14 (28797691-28797851) | |
| 253-414, gnl|monDom2|scaffold_7 (70901828-70901998) | |
| 253-414, gnl|oryCun1|scaffold_212782 (4831-5012) | |
| 253-414, gnl|panTro1|chr2 (15875678-15875859) | |
| 253-414, gnl|rheMac2|chr2 (157580391-157580572) | |
| 253-414, gnl|rn3|chr16 (6816961-6817139) | |
| 253-414, gnl|tetNig1|chrUn_random (41369252-41369410) | |
| 253-414, gnl|xenTro1|scaffold_1228 (63244-63070) | |
| 473-606, gnl|bosTau2|chr1 (98671722-98671855) | |
| 473-606, gnl|canFam2|chr23 (30390847-30390699) | |
| 473-606, gnl|danRer3|chrNA (14696694-14696553) | |
| 473-606, gnl|dasNov1|scaffold_7748 (8090-7942) | |
| 473-606, gnl|fr1|chrUn (191273900-191273766) | |
| 473-606, gnl|galGal2|chr2 (40597915-40597767) | |
| 473-606, gnl|hg17|chr3 (15263830-15263978) | |
| 473-606, gnl|Hg17|chr3 (15263836-15263969) | |
| 473-606, gnl|loxAfr1|scaffold_58719 (10660-10808) | |
| 473-606, gnl|mm7|chr14 (28799361-28799507) | |
| 473-606, gnl|Mm7|chr14 (28799366-28799499) | |
| 473-606, gnl|monDom2|scaffold_7 (70904046-70904200) | |
| 473-606, gnl|oryCun1|scaffold_212782 (6457-6605) | |
| 473-606, gnl|panTro1|chr2 (15877533-15877681) | |
| 473-606, gnl|rheMac2|chr2 (157582263-157582411) | |
| 473-606, gnl|rn3|chr16 (6818435-6818581) | |
| 473-606, gnl|tetNig1|chrUn_random (41370670-41370804) | |
| 473-606, gnl|xenTro1|scaffold_1228 (61899-61742) | |
| 690-1324, gnl|bosTau2|chr1 (98674814-98675433) | |
| 690-1324, gnl|Hg17|chr3 (15267618-15268245) | |
| 690-1324, gnl|Mm7|chr14 (28800516-28801101) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 52-190, gnl|bosTau2|chr1 (98666693-98666831) | |
| 52-190, gnl|Hg17|chr3 (15257962-15258100) | |
| 52-190, gnl|Mm7|chr14 (28795101-28795239) | |
| 253-414, gnl|bosTau2|chr1 (98670141-98670301) | |
| 253-414, gnl|canFam2|chr23 (30394840-30394663) | |
| 253-414, gnl|danRer3|chrNA (14697123-14696928) | |
| 253-414, gnl|dasNov1|scaffold_7748 (9479-9298) | |
| 253-414, gnl|echTel1|scaffold_115587 (521-699) | |
| 253-414, gnl|fr1|chrUn (191274669-191274493) | |
| 253-414, gnl|galGal2|chr2 (40600753-40600590) | |
| 253-414, gnl|hg17|chr3 (15262007-15262188) | |
| 253-414, gnl|Hg17|chr3 (15262025-15262185) | |
| 253-414, gnl|loxAfr1|scaffold_125120 (7255-7435) | |
| 253-414, gnl|mm7|chr14 (28797676-28797854) | |
| 253-414, gnl|Mm7|chr14 (28797691-28797851) | |
| 253-414, gnl|monDom2|scaffold_7 (70901828-70901998) | |
| 253-414, gnl|oryCun1|scaffold_212782 (4831-5012) | |
| 253-414, gnl|panTro1|chr2 (15875678-15875859) | |
| 253-414, gnl|rheMac2|chr2 (157580391-157580572) | |
| 253-414, gnl|rn3|chr16 (6816961-6817139) | |
| 253-414, gnl|tetNig1|chrUn_random (41369252-41369410) | |
| 253-414, gnl|xenTro1|scaffold_1228 (63244-63070) | |
| 473-606, gnl|bosTau2|chr1 (98671722-98671855) | |
| 473-606, gnl|canFam2|chr23 (30390847-30390699) | |
| 473-606, gnl|danRer3|chrNA (14696694-14696553) | |
| 473-606, gnl|dasNov1|scaffold_7748 (8090-7942) | |
| 473-606, gnl|fr1|chrUn (191273900-191273766) | |
| 473-606, gnl|galGal2|chr2 (40597915-40597767) | |
| 473-606, gnl|hg17|chr3 (15263830-15263978) | |
| 473-606, gnl|Hg17|chr3 (15263836-15263969) | |
| 473-606, gnl|loxAfr1|scaffold_58719 (10660-10808) | |
| 473-606, gnl|mm7|chr14 (28799361-28799507) | |
| 473-606, gnl|Mm7|chr14 (28799366-28799499) | |
| 473-606, gnl|monDom2|scaffold_7 (70904046-70904200) | |
| 473-606, gnl|oryCun1|scaffold_212782 (6457-6605) | |
| 473-606, gnl|panTro1|chr2 (15877533-15877681) | |
| 473-606, gnl|rheMac2|chr2 (157582263-157582411) | |
| 473-606, gnl|rn3|chr16 (6818435-6818581) | |
| 473-606, gnl|tetNig1|chrUn_random (41370670-41370804) | |
| 473-606, gnl|xenTro1|scaffold_1228 (61899-61742) | |
| 690-1324, gnl|bosTau2|chr1 (98674814-98675433) | |
| 690-1324, gnl|Hg17|chr3 (15267618-15268245) | |
| 690-1324, gnl|Mm7|chr14 (28800516-28801101) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| hlv (0.139256) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| spc (0.113366) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.139256) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| spc (0.113366) |