Ss1.1-Ova1-OVR010003F12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTCCCCGCCAGGGCTGGGCGGCATCCGCGGAGGCTCCTCGGCCAGGCCGGGTCTGCTGG AGCCGCGCTGACACCCCGGCGGCGGCGGCGCGCAGAGGCAGCGGCGGGCGGCAGGCTGGG AGACCGGAGCCGGGCCAGCGACCTGCCATGGAGACTCGCTACAACCTGAAGAGCCCAGCT GTTAAGCGTTTAATGAAAGAAGCAGCAGAATTGAAAGATCCAACAGATCATTACCATGCA CAGCCTTTAGAGGATAACCTTTTTGAATGGCATTTCACAGTTAGAGGGCCCCCAGATTCT GATTTTGATGGAGGAGTCTATCATGGACGAATAGTGCTGCCACCAGAGTATCCCATGAAA CCACCAAGCATTATTCTCCTAACGGCTAATGGACGATTTGAAGTAGGCAAGAAAATCTGT TTGAGCATCTCAGGACATCATCCAGAGACTTGGCAGCCTTCATGGAGTATAAGAACAGCA TTATTAGCCATCATTGGATTTATGCCAACAAAAGGAGAGGGAGCCATAGGTTCTCTAGAT TATACACCTGAGGAAAGAAGAGCCCTTGCCAAAAAATCACAGGATTTTTGCTGTGAGGGA TGTGGCTTTGCCATGAAGGATGTCCTATTACCTTTAAAATCTGGAAGTGATTCAAGCCAG GCTGATGAAGAAGCCAAGGAACTGGCTAGACAAATCAGTTTTAAGGCTGAAGTCAATTCA TCCGGAAAGACTATTACCGAGTCGGACTTAAATCACTCTTTTTCACTGCATGATTTACAG GATGATATACCTACAACATTCCAGGGTGCTACAGCAAGTACATCGTATGGAGTCCAGAAC CCCTCAGCAGCATCCCCTGAACAACCTGCCCAACCTGCAGCTAAGAATACCTCCCTGAGT CCTCGACAGCGCCGGGCCCAGCAGCAGAGTCAAAGAAGGTCGTCTCCGTCACCAGATGTC ATCCAGGGCCAGCAGCCAAGAGACAACCACACTGATCATGGCGGATCCGCTGTATTGATT GTCATCTTAACTTTGGCATTGGCAGCTCTTATATTCCGACGAATATATCTGGCCAATGAG TACATATTTGACTTTGAGATATAATACGGTTTTGTGTCTTAAGAGCTGTGACTCAACTGC TTCATTAAACATTCTGCATTGGGTATAATCTAAGAATTGTTTACAAAAAGATTATTTTGT ATTTACCTTTCATTCCTTTTTTGATCCTTTATAAATTCAGTATAAATATAGTTAGACATT CAGACTGTGTCCTGCTTAGTTTAAGGGACTGAAGTCAAAGTCCCTTGTCTCTGTATGACC TGCTTTACAGGGGAATAACTTGTTTTTCATGCCTCAGCTTTTCTTTATGTAAATTTGTGA TACTTTTCTGTATAGCCCTTTGAAATTGTTGGACAAAAGATGGTATTTTAAGTTCCAGTG AGTATTACTAGTTACTCAGTACCCTTTATTGAGTACTCTTTCTACTTATGTAGAATGATA GAGGGGTAAGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTCCCCGCCAGGGCTGGGCGGCATCCGCGGAGGCTCCTCGGCCAGGCCGGGTCTGCTGG AGCCGCGCTGACACCCCGGCGGCGGCGGCGCGCAGAGGCAGCGGCGGGCGGCAGGCTGGG AGACCGGAGCCGGGCCAGCGACCTGCCATGGAGACTCGCTACAACCTGAAGAGCCCAGCT GTTAAGCGTTTAATGAAAGAAGCAGCAGAATTGAAAGATCCAACAGATCATTACCATGCA CAGCCTTTAGAGGATAACCTTTTTGAATGGCATTTCACAGTTAGAGGGCCCCCAGATTCT GATTTTGATGGAGGAGTCTATCATGGACGAATAGTGCTGCCACCAGAGTATCCCATGAAA CCACCAAGCATTATTCTCCTAACGGCTAATGGACGATTTGAAGTAGGCAAGAAAATCTGT TTGAGCATCTCAGGACATCATCCAGAGACTTGGCAGCCTTCATGGAGTATAAGAACAGCA TTATTAGCCATCATTGGATTTATGCCAACAAAAGGAGAGGGAGCCATAGGTTCTCTAGAT TATACACCTGAGGAAAGAAGAGCCCTTGCCAAAAAATCACAGGATTTTTGCTGTGAGGGA TGTGGCTTTGCCATGAAGGATGTCCTATTACCTTTAAAATCTGGAAGTGATTCAAGCCAG GCTGATGAAGAAGCCAAGGAACTGGCTAGACAAATCAGTTTTAAGGCTGAAGTCAATTCA TCCGGAAAGACTATTACCGAGTCGGACTTAAATCACTCTTTTTCACTGCATGATTTACAG GATGATATACCTACAACATTCCAGGGTGCTACAGCAAGTACATCGTATGGAGTCCAGAAC CCCTCAGCAGCATCCCCTGAACAACCTGCCCAACCTGCAGCTAAGAATACCTCCCTGAGT CCTCGACAGCGCCGGGCCCAGCAGCAGAGTCAAAGAAGGTCGTCTCCGTCACCAGATGTC ATCCAGGGCCAGCAGCCAAGAGACAACCACACTGATCATGGCGGATCCGCTGTATTGATT GTCATCTTAACTTTGGCATTGGCAGCTCTTATATTCCGACGAATATATCTGGCCAATGAG TACATATTTGACTTTGAGATATAATACGGTTTTGTGTCTTAAGAGCTGTGACTCAACTGC TTCATTAAACATTCTGCATTGGGTATAATCTAAGAATTGTTTACAAAAAGATTATTTTGT ATTTACCTTTCATTCCTTTTTTGATCCTTTATAAATTCAGTATAAATATAGTTAGACATT CAGACTGTGTCCTGCTTAGTTTAAGGGACTGAAGTCAAAGTCCCTTGTCTCTGTATGACC TGCTTTACAGGGGAATAACTTGTTTTTCATGCCTCAGCTTTTCTTTATGTAAATTTGTGA TACTTTTCTGTATAGCCCTTTGAAATTGTTGGACAAAAGATGGTATTTTAAGTTCCAGTG AGTATTACTAGTTACTCAGTACCCTTTATTGAGTACTCTTTCTACTTATGTAGAATGATA GAGGGGTAAGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 935-1094, - strand, RNAz p=0.934354 | |
| 1392-1512, - strand, RNAz p=0.863707 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 935-1094, - strand, RNAz p=0.934354 | |
| 1392-1512, - strand, RNAz p=0.863707 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-181, gnl|bosTau2|chr9 (34168854-34169036) | |
| 1-181, gnl|Hg17|chr6 (90119149-90118974) | |
| 251-385, gnl|bosTau2|chr9 (34179913-34180047) | |
| 251-385, gnl|canFam2|chr12 (51562670-51562857) | |
| 251-385, gnl|danRer3|chr20 (1596164-1596314) | |
| 251-385, gnl|dasNov1|scaffold_29151 (39586-39432) | |
| 251-385, gnl|echTel1|scaffold_179726 (1262-1112) | |
| 251-385, gnl|fr1|chrUn (258820924-258820775) | |
| 251-385, gnl|galGal2|chr3 (74035921-74035773) | |
| 251-385, gnl|hg17|chr6 (90108758-90108909) | |
| 251-385, gnl|Hg17|chr6 (90108895-90108761) | |
| 251-385, gnl|loxAfr1|scaffold_1114 (32367-32216) | |
| 251-385, gnl|mm7|chr4 (33316741-33316590) | |
| 251-385, gnl|Mm7|chr4 (33316602-33316736) | |
| 251-385, gnl|monDom2|scaffold_0 (139114883-139114733) | |
| 251-385, gnl|oryCun1|scaffold_203350 (108112-107961) | |
| 251-385, gnl|panTro1|chr5 (91818507-91818658) | |
| 251-385, gnl|rheMac2|chr4 (85198932-85199083) | |
| 251-385, gnl|rn3|chr5 (49323208-49323057) | |
| 251-385, gnl|tetNig1|chrUn_random (152257787-152257648) | |
| 251-385, gnl|xenTro1|scaffold_604 (137027-137185) | |
| 565-706, gnl|bosTau2|chr9 (34184953-34185094) | |
| 565-706, gnl|canFam2|chr12 (51556026-51556128) | |
| 565-706, gnl|danRer3|chr20 (1590379-1590475) | |
| 565-706, gnl|dasNov1|scaffold_107289 (792-693) | |
| 565-706, gnl|echTel1|scaffold_286122 (1606-1504) | |
| 565-706, gnl|fr1|chrUn (258823403-258823301) | |
| 565-706, gnl|galGal2|chr3 (74040764-74040662) | |
| 565-706, gnl|hg17|chr6 (90101737-90101839) | |
| 565-706, gnl|Hg17|chr6 (90101880-90101739) | |
| 565-706, gnl|mm7|chr4 (33322396-33322294) | |
| 565-706, gnl|Mm7|chr4 (33322251-33322392) | |
| 565-706, gnl|monDom2|scaffold_0 (139121344-139121245) | |
| 565-706, gnl|oryCun1|scaffold_203350 (114815-114714) | |
| 565-706, gnl|panTro1|chr5 (91811842-91811944) | |
| 565-706, gnl|rheMac2|chr4 (85193643-85193745) | |
| 565-706, gnl|rn3|chr5 (49327495-49327393) | |
| 565-706, gnl|xenTro1|scaffold_604 (134731-134826) | |
| 816-1512, gnl|bosTau2|chr9 (34192418-34193121) | |
| 816-1512, gnl|Hg17|chr6 (90096405-90095691) | |
| 816-1512, gnl|Mm7|chr4 (33328077-33328762) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-181, gnl|bosTau2|chr9 (34168854-34169036) | |
| 1-181, gnl|Hg17|chr6 (90119149-90118974) | |
| 251-385, gnl|bosTau2|chr9 (34179913-34180047) | |
| 251-385, gnl|canFam2|chr12 (51562670-51562857) | |
| 251-385, gnl|danRer3|chr20 (1596164-1596314) | |
| 251-385, gnl|dasNov1|scaffold_29151 (39586-39432) | |
| 251-385, gnl|echTel1|scaffold_179726 (1262-1112) | |
| 251-385, gnl|fr1|chrUn (258820924-258820775) | |
| 251-385, gnl|galGal2|chr3 (74035921-74035773) | |
| 251-385, gnl|hg17|chr6 (90108758-90108909) | |
| 251-385, gnl|Hg17|chr6 (90108895-90108761) | |
| 251-385, gnl|loxAfr1|scaffold_1114 (32367-32216) | |
| 251-385, gnl|mm7|chr4 (33316741-33316590) | |
| 251-385, gnl|Mm7|chr4 (33316602-33316736) | |
| 251-385, gnl|monDom2|scaffold_0 (139114883-139114733) | |
| 251-385, gnl|oryCun1|scaffold_203350 (108112-107961) | |
| 251-385, gnl|panTro1|chr5 (91818507-91818658) | |
| 251-385, gnl|rheMac2|chr4 (85198932-85199083) | |
| 251-385, gnl|rn3|chr5 (49323208-49323057) | |
| 251-385, gnl|tetNig1|chrUn_random (152257787-152257648) | |
| 251-385, gnl|xenTro1|scaffold_604 (137027-137185) | |
| 565-706, gnl|bosTau2|chr9 (34184953-34185094) | |
| 565-706, gnl|canFam2|chr12 (51556026-51556128) | |
| 565-706, gnl|danRer3|chr20 (1590379-1590475) | |
| 565-706, gnl|dasNov1|scaffold_107289 (792-693) | |
| 565-706, gnl|echTel1|scaffold_286122 (1606-1504) | |
| 565-706, gnl|fr1|chrUn (258823403-258823301) | |
| 565-706, gnl|galGal2|chr3 (74040764-74040662) | |
| 565-706, gnl|hg17|chr6 (90101737-90101839) | |
| 565-706, gnl|Hg17|chr6 (90101880-90101739) | |
| 565-706, gnl|mm7|chr4 (33322396-33322294) | |
| 565-706, gnl|Mm7|chr4 (33322251-33322392) | |
| 565-706, gnl|monDom2|scaffold_0 (139121344-139121245) | |
| 565-706, gnl|oryCun1|scaffold_203350 (114815-114714) | |
| 565-706, gnl|panTro1|chr5 (91811842-91811944) | |
| 565-706, gnl|rheMac2|chr4 (85193643-85193745) | |
| 565-706, gnl|rn3|chr5 (49327495-49327393) | |
| 565-706, gnl|xenTro1|scaffold_604 (134731-134826) | |
| 816-1512, gnl|bosTau2|chr9 (34192418-34193121) | |
| 816-1512, gnl|Hg17|chr6 (90096405-90095691) | |
| 816-1512, gnl|Mm7|chr4 (33328077-33328762) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| tes (1.87032) | |
| thg (0.507164) | |
| elu (0.385356) | |
| nje (0.33184) | |
| lyg (0.266205) | |
| cbl (0.229595) | |
| eje (0.197668) | |
| col (0.195008) | |
| sin (0.174948) | |
| cag (0.151194) | |
| fat (0.147427) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| tra (0.123092) | |
| cty (0.10408) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (1.87032) | |
| thg (0.507164) | |
| elu (0.385356) | |
| nje (0.33184) | |
| lyg (0.266205) | |
| cbl (0.229595) | |
| eje (0.197668) | |
| col (0.195008) | |
| sin (0.174948) | |
| cag (0.151194) | |
| fat (0.147427) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| tra (0.123092) | |
| cty (0.10408) |