Ss1.1-Ova1-OVR010003H04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACAAAACAGATCCTGCGTATGCTGGAGAAGGATGATTTCATCGATGACCCTGGCCTAA GGAATGACACTCGAAATACACCTGTGCAACTGCCACTGGCTCACTCAGGCTGGCTTTTTA AGGAAGAGGATGAAGAAGCAGATGTTAAACCCTGGCTTCCTGGCCACAAGGAAGAGGACA TGGATGTGGACGGGCCTGCTGTGAAAGTGAAAGAAGAGCCACGAGATGAGGAGGAGGAGA CCAAGGTGAAGGCTCCTCCCAGAGCCACCCGGAAGACCCCGAGCCTACCGAAGGACGTGT CTGTGGCAGAGCTGCTCAGGGAGCTGAGCCTCACACAGGAGGAAGAGCTGCTGTTCCTGC AGCTGCCAGACTCGCTCCCTGGCCAGCCACCCACTCAGGACATCAAGCCTGTCAAGACGG AGGTGCAGGGCGAGGATGGCCAGATGGTGGTTATAAAGCAGGAGAAAGACCGGGAAGCCC GCCTGGCAGAGAACACCTGTACCCTGGCTGACCTGACAGAGGGCCAGGTTGGCAAGCTGC TCATCCGCAAGTCAGGGAAGGTGCAGCTCCTCCTGGGCAAGGTGACTCTGGACGTGACGA TGGGAACCGCCTGCTCTTTCCTGCAGGAGCTGGTGTCCGTGGGCCTTGGAGACAGTAGGA CGGGTGAGATGACAGTCCTGGGACATGTGAAGCACAAACTTGTATGTTCTCCCAATTTTG AATCCCTGTTGGATCACAAGCACCGGTAAAACGAGCAGATGGAGCATGGTGGTGACTGCC CACGGCTGCTGCCTGCTCCAGACGTTTTGTTCTCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACAAAACAGATCCTGCGTATGCTGGAGAAGGATGATTTCATCGATGACCCTGGCCTAA GGAATGACACTCGAAATACACCTGTGCAACTGCCACTGGCTCACTCAGGCTGGCTTTTTA AGGAAGAGGATGAAGAAGCAGATGTTAAACCCTGGCTTCCTGGCCACAAGGAAGAGGACA TGGATGTGGACGGGCCTGCTGTGAAAGTGAAAGAAGAGCCACGAGATGAGGAGGAGGAGA CCAAGGTGAAGGCTCCTCCCAGAGCCACCCGGAAGACCCCGAGCCTACCGAAGGACGTGT CTGTGGCAGAGCTGCTCAGGGAGCTGAGCCTCACACAGGAGGAAGAGCTGCTGTTCCTGC AGCTGCCAGACTCGCTCCCTGGCCAGCCACCCACTCAGGACATCAAGCCTGTCAAGACGG AGGTGCAGGGCGAGGATGGCCAGATGGTGGTTATAAAGCAGGAGAAAGACCGGGAAGCCC GCCTGGCAGAGAACACCTGTACCCTGGCTGACCTGACAGAGGGCCAGGTTGGCAAGCTGC TCATCCGCAAGTCAGGGAAGGTGCAGCTCCTCCTGGGCAAGGTGACTCTGGACGTGACGA TGGGAACCGCCTGCTCTTTCCTGCAGGAGCTGGTGTCCGTGGGCCTTGGAGACAGTAGGA CGGGTGAGATGACAGTCCTGGGACATGTGAAGCACAAACTTGTATGTTCTCCCAATTTTG AATCCCTGTTGGATCACAAGCACCGGTAAAACGAGCAGATGGAGCATGGTGGTGACTGCC CACGGCTGCTGCCTGCTCCAGACGTTTTGTTCTCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 206-404, - strand, RNAz p=0.983747 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 206-404, - strand, RNAz p=0.983747 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 206-474, gnl|bosTau2|chr8 (31306523-31306255) | |
| 206-474, gnl|canFam2|chr25 (38002233-38001940) | |
| 206-474, gnl|canFam2|chr25 (38002206-38001944) | |
| 206-474, gnl|danRer3|chrNA (218274558-218274805) | |
| 206-474, gnl|danRer3|chrNA (218274563-218274804) | |
| 206-474, gnl|dasNov1|scaffold_60968 (2679-2386) | |
| 206-474, gnl|dasNov1|scaffold_60968 (2652-2390) | |
| 206-474, gnl|echTel1|scaffold_55660 (3665-3372) | |
| 206-474, gnl|echTel1|scaffold_55660 (3638-3376) | |
| 206-474, gnl|fr1|chrUn (170873301-170873038) | |
| 206-474, gnl|fr1|chrUn (170873285-170872976) | |
| 206-474, gnl|hg17|chr10 (76085361-76085621) | |
| 206-474, gnl|hg17|chr8 (22162478-22162769) | |
| 206-474, gnl|Hg17|chr8 (22162500-22162768) | |
| 206-474, gnl|loxAfr1|scaffold_25055 (26739-27032) | |
| 206-474, gnl|loxAfr1|scaffold_25055 (26766-27028) | |
| 206-474, gnl|mm7|chr14 (65084790-65084498) | |
| 206-474, gnl|mm7|chr14 (65084764-65084502) | |
| 206-474, gnl|Mm7|chr14 (65084765-65084497) | |
| 206-474, gnl|monDom2|scaffold_1 (73296544-73296256) | |
| 206-474, gnl|monDom2|scaffold_4 (54230806-54231058) | |
| 206-474, gnl|oryCun1|scaffold_108405 (3381-3674) | |
| 206-474, gnl|oryCun1|scaffold_108405 (3408-3670) | |
| 206-474, gnl|panTro1|chr7 (23095508-23095799) | |
| 206-474, gnl|panTro1|chr8 (77344868-77345128) | |
| 206-474, gnl|rheMac2|chr8 (22172875-22173163) | |
| 206-474, gnl|rheMac2|chr9 (62351022-62350771) | |
| 206-474, gnl|rn3|chr15 (50855457-50855165) | |
| 206-474, gnl|rn3|chr20 (14371934-14371698) | |
| 206-474, gnl|tetNig1|chrUn_random (34471236-34470978) | |
| 206-474, gnl|tetNig1|chrUn_random (34471220-34470882) | |
| 206-474, gnl|xenTro1|scaffold_106 (1234240-1233947) | |
| 623-816, gnl|bosTau2|chr8 (31305264-31305069) | |
| 623-816, gnl|Hg17|chr8 (22163850-22164045) | |
| 623-816, gnl|Mm7|chr14 (65084066-65083886) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 206-474, gnl|bosTau2|chr8 (31306523-31306255) | |
| 206-474, gnl|canFam2|chr25 (38002233-38001940) | |
| 206-474, gnl|canFam2|chr25 (38002206-38001944) | |
| 206-474, gnl|danRer3|chrNA (218274558-218274805) | |
| 206-474, gnl|danRer3|chrNA (218274563-218274804) | |
| 206-474, gnl|dasNov1|scaffold_60968 (2679-2386) | |
| 206-474, gnl|dasNov1|scaffold_60968 (2652-2390) | |
| 206-474, gnl|echTel1|scaffold_55660 (3665-3372) | |
| 206-474, gnl|echTel1|scaffold_55660 (3638-3376) | |
| 206-474, gnl|fr1|chrUn (170873301-170873038) | |
| 206-474, gnl|fr1|chrUn (170873285-170872976) | |
| 206-474, gnl|hg17|chr10 (76085361-76085621) | |
| 206-474, gnl|hg17|chr8 (22162478-22162769) | |
| 206-474, gnl|Hg17|chr8 (22162500-22162768) | |
| 206-474, gnl|loxAfr1|scaffold_25055 (26739-27032) | |
| 206-474, gnl|loxAfr1|scaffold_25055 (26766-27028) | |
| 206-474, gnl|mm7|chr14 (65084790-65084498) | |
| 206-474, gnl|mm7|chr14 (65084764-65084502) | |
| 206-474, gnl|Mm7|chr14 (65084765-65084497) | |
| 206-474, gnl|monDom2|scaffold_1 (73296544-73296256) | |
| 206-474, gnl|monDom2|scaffold_4 (54230806-54231058) | |
| 206-474, gnl|oryCun1|scaffold_108405 (3381-3674) | |
| 206-474, gnl|oryCun1|scaffold_108405 (3408-3670) | |
| 206-474, gnl|panTro1|chr7 (23095508-23095799) | |
| 206-474, gnl|panTro1|chr8 (77344868-77345128) | |
| 206-474, gnl|rheMac2|chr8 (22172875-22173163) | |
| 206-474, gnl|rheMac2|chr9 (62351022-62350771) | |
| 206-474, gnl|rn3|chr15 (50855457-50855165) | |
| 206-474, gnl|rn3|chr20 (14371934-14371698) | |
| 206-474, gnl|tetNig1|chrUn_random (34471236-34470978) | |
| 206-474, gnl|tetNig1|chrUn_random (34471220-34470882) | |
| 206-474, gnl|xenTro1|scaffold_106 (1234240-1233947) | |
| 623-816, gnl|bosTau2|chr8 (31305264-31305069) | |
| 623-816, gnl|Hg17|chr8 (22163850-22164045) | |
| 623-816, gnl|Mm7|chr14 (65084066-65083886) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.172801) | |
| ese (0.126502) | |
| ebs (0.118301) |