Non-Coding RNA Search

Ss1.1-Ova1-OVR010004A07.5

Sequence:


               
               GCGAGGAGCGGCGTTCCCAGCATCCTCCGCGGCGCCGCTGAGGACCGTTCCACGCCGTTG
CCGCCCGGCCGGAGCACCGCGCCGCAGGTTGCCCTCGGTGTGCCCGAAACTCGACGTGTA
CCCTGCCGCGAGGATGGAGGGGCCTTTGTCCGTGTTCGGGGACCGCAGCACTGGGGAGGC
GATCCGCTCCCAGAACGTCATGGCTGCGGCTTCGATTGCTAATATTGTGAAAAGTTCTCT
TGGTCCAGTCGGCCTGGATAAAATGTTAGTGGATGATATTGGTGATGTAACCATAACTAA
CGATGGTGCAACCATCTTGAAGTTACTGGAGGTAGAACATCCTGCAGCCAAAGTTCTCTG
TGAGCTAGCTGATCTGCAAGACAAAGAAGTGGGGGATGGAACCACCTCTGTGGTTATTAT
TGCAGCAGAACTGCTGAAAAATGCGGATGAACTAGTCAAACAGAAAATCCATCCCACATC
AGTTATTAGTGGCTATCGACTTGCTTGCAAGGAAGCAGTGCGTTATATCAGTGAAAATCT
AATCATTAACACAGATGAACTTGGGAGGGATTGCCTGATTAATGCTGCTAAGACATCAAT
GTCTTCCAAAATCATTGGAATAAATGGTGATTTCTTTGCTAATATGGTGGTAGATGCTGT
ACTTGCTATTAAATACACAGATGTCAGAGGCCAGCCACGCTATCCGGTCAATTCCATTAA
TATCCTGAAAGCCCACGGGAGAAGTCAGACGGAGAGTATGCTCATCAACGGCTATGCGCT
CAACTGTGTGGTGGGATCCCAGGGCATGCCCAAGAGAATAGTTAATGCAAAAATTGCTTG
CCTTGACTTCAGCCTGCAAAAAACAAAAATGAAGCTTGGTGTACAAGTGGTTATTACAGA
CCCTGAAAAACTGGACCAGATTAGACAGAGGGAATCAGATATCACCAAGGAGCGAATCCA
GAAGATTCTGGCAACTGGTGCCAATGTTATTCTAACCACTGGTGGGATTGACGACATGTG
TCTGAAGTATTTTGTGGAGACCGGTGCCATGGCAGTTAGAAGAGTTTTAAAAAGGGACCT
TAAACGCATTGCTAAAGCTTCTGGAGCGACTATTCTGTCAACTCTGGCCAATTTGGAAGG
CGAAGAAACGTTTGAAGCTTCAATGTTGGGACAAGCAGAAGAGGTGGTACAGGAAAGAAT
TTGTGATGATGAACTGATCTTGATTAAAAACACTAAAGCTCGTACCTCTGCGTCCATCAT
CTTACGCGGGGCCAATGATTTCATGTGTGACGAGATGGAGCGCTCTCTGCACGATGCCCT
CTGTGTGGTGAGGAGAGTTCTGGAGTCCAAGTCTGTGGTTCCAGGCGGGGGTGCAGTGGA
AGCCGCCCTTTCCATTTACCTCGAGAACTACGCGACCAGCATGGGCTCCCGGGAACAGCT
TGCTATTGCAGAGTTTGCAAGATCTCTTCTTGTCATTCCTAATACTCTGGCAGTTAATGC
TGCCCAAGACTCCACGGATCTGGTCGCAAAATTAAGAGCCTTTCATAATGAGGCTCAAGT
TAACCCAGAACGCAAAAATCTAAAATGGATTGGTCTTGACTTGGTCAATGGTAAACCCCG
AGACAACAAGCAAGCAGGGGTGTTTGAACCAACCATAGTTAAAGTAAAGAGTTTGAAATT
TGCAACTGAAGCTGCAATCACCATTCTTCGAATTGATGATCTTATTAAGTTACACCCAGA
AAGCAAAGACGATAAGCATGGAGGGTATGAAGATGCTGTCCACTCTGGAGCCCTTGATGA
CTGATCGCATTTATTTATAACAGTGTTAGAACCAATTTTCTTGTACCTGGAATGTTATAC
ATTAAAAGTGCAACAAGCTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGAGGAGCGGCGTTCCCAGCATCCTCCGCGGCGCCGCTGAGGACCGTTCCACGCCGTTG
CCGCCCGGCCGGAGCACCGCGCCGCAGGTTGCCCTCGGTGTGCCCGAAACTCGACGTGTA
CCCTGCCGCGAGGATGGAGGGGCCTTTGTCCGTGTTCGGGGACCGCAGCACTGGGGAGGC
GATCCGCTCCCAGAACGTCATGGCTGCGGCTTCGATTGCTAATATTGTGAAAAGTTCTCT
TGGTCCAGTCGGCCTGGATAAAATGTTAGTGGATGATATTGGTGATGTAACCATAACTAA
CGATGGTGCAACCATCTTGAAGTTACTGGAGGTAGAACATCCTGCAGCCAAAGTTCTCTG
TGAGCTAGCTGATCTGCAAGACAAAGAAGTGGGGGATGGAACCACCTCTGTGGTTATTAT
TGCAGCAGAACTGCTGAAAAATGCGGATGAACTAGTCAAACAGAAAATCCATCCCACATC
AGTTATTAGTGGCTATCGACTTGCTTGCAAGGAAGCAGTGCGTTATATCAGTGAAAATCT
AATCATTAACACAGATGAACTTGGGAGGGATTGCCTGATTAATGCTGCTAAGACATCAAT
GTCTTCCAAAATCATTGGAATAAATGGTGATTTCTTTGCTAATATGGTGGTAGATGCTGT
ACTTGCTATTAAATACACAGATGTCAGAGGCCAGCCACGCTATCCGGTCAATTCCATTAA
TATCCTGAAAGCCCACGGGAGAAGTCAGACGGAGAGTATGCTCATCAACGGCTATGCGCT
CAACTGTGTGGTGGGATCCCAGGGCATGCCCAAGAGAATAGTTAATGCAAAAATTGCTTG
CCTTGACTTCAGCCTGCAAAAAACAAAAATGAAGCTTGGTGTACAAGTGGTTATTACAGA
CCCTGAAAAACTGGACCAGATTAGACAGAGGGAATCAGATATCACCAAGGAGCGAATCCA
GAAGATTCTGGCAACTGGTGCCAATGTTATTCTAACCACTGGTGGGATTGACGACATGTG
TCTGAAGTATTTTGTGGAGACCGGTGCCATGGCAGTTAGAAGAGTTTTAAAAAGGGACCT
TAAACGCATTGCTAAAGCTTCTGGAGCGACTATTCTGTCAACTCTGGCCAATTTGGAAGG
CGAAGAAACGTTTGAAGCTTCAATGTTGGGACAAGCAGAAGAGGTGGTACAGGAAAGAAT
TTGTGATGATGAACTGATCTTGATTAAAAACACTAAAGCTCGTACCTCTGCGTCCATCAT
CTTACGCGGGGCCAATGATTTCATGTGTGACGAGATGGAGCGCTCTCTGCACGATGCCCT
CTGTGTGGTGAGGAGAGTTCTGGAGTCCAAGTCTGTGGTTCCAGGCGGGGGTGCAGTGGA
AGCCGCCCTTTCCATTTACCTCGAGAACTACGCGACCAGCATGGGCTCCCGGGAACAGCT
TGCTATTGCAGAGTTTGCAAGATCTCTTCTTGTCATTCCTAATACTCTGGCAGTTAATGC
TGCCCAAGACTCCACGGATCTGGTCGCAAAATTAAGAGCCTTTCATAATGAGGCTCAAGT
TAACCCAGAACGCAAAAATCTAAAATGGATTGGTCTTGACTTGGTCAATGGTAAACCCCG
AGACAACAAGCAAGCAGGGGTGTTTGAACCAACCATAGTTAAAGTAAAGAGTTTGAAATT
TGCAACTGAAGCTGCAATCACCATTCTTCGAATTGATGATCTTATTAAGTTACACCCAGA
AAGCAAAGACGATAAGCATGGAGGGTATGAAGATGCTGTCCACTCTGGAGCCCTTGATGA
CTGATCGCATTTATTTATAACAGTGTTAGAACCAATTTTCTTGTACCTGGAATGTTATAC
ATTAAAAGTGCAACAAGCTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57032236|ref|XP_541181.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57032236|ref|XP_541181.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               238-1601, + strand, RNAz p=0.934535
               

               
               1247-1366, - strand, RNAz p=0.789555

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-1601, + strand, RNAz p=0.934535
               

               
               1247-1366, - strand, RNAz p=0.789555

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               61-197, gnl|bosTau2|chr9 (59639722-59639584)
               

               
               61-197, gnl|Hg17|chr6 (160180985-160180848)
               

               
               61-197, gnl|Mm7|chr17 (11845605-11845474)
               


               
               238-899, gnl|bosTau2|chr12 (1157133-1157749)
               

               
               238-899, gnl|Hg17|chr12 (19985677-19986333)
               

               
               238-899, gnl|Mm7|chr17 (11844265-11841268)
               


               
               1026-1896, gnl|bosTau2|chr12 (1157748-1158606)
               

               
               1026-1896, gnl|Hg17|chr12 (19986332-19987318)
               

               
               1026-1896, gnl|Mm7|chr17 (11841269-11837555)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-197, gnl|bosTau2|chr9 (59639722-59639584)
               

               
               61-197, gnl|Hg17|chr6 (160180985-160180848)
               

               
               61-197, gnl|Mm7|chr17 (11845605-11845474)
               


               
               238-899, gnl|bosTau2|chr12 (1157133-1157749)
               

               
               238-899, gnl|Hg17|chr12 (19985677-19986333)
               

               
               238-899, gnl|Mm7|chr17 (11844265-11841268)
               


               
               1026-1896, gnl|bosTau2|chr12 (1157748-1158606)
               

               
               1026-1896, gnl|Hg17|chr12 (19986332-19987318)
               

               
               1026-1896, gnl|Mm7|chr17 (11841269-11837555)

Expressed library(ies): 45 entry(ies)

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Expressed library(ies): 45 entry(ies)

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               spl (0.572738)
               

               
               pan (0.471921)
               

               
               fhi (0.339155)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               lnt (0.284616)
               

               
               nca (0.273748)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 45 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.572738)
               

               
               pan (0.471921)
               

               
               fhi (0.339155)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               lnt (0.284616)
               

               
               nca (0.273748)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	238-1601, + strand, RNAz p=0.934535
	1247-1366, - strand, RNAz p=0.789555

	61-197, gnl\|bosTau2\|chr9 (59639722-59639584)
	61-197, gnl\|Hg17\|chr6 (160180985-160180848)
	61-197, gnl\|Mm7\|chr17 (11845605-11845474)

	238-899, gnl\|bosTau2\|chr12 (1157133-1157749)
	238-899, gnl\|Hg17\|chr12 (19985677-19986333)
	238-899, gnl\|Mm7\|chr17 (11844265-11841268)

	1026-1896, gnl\|bosTau2\|chr12 (1157748-1158606)
	1026-1896, gnl\|Hg17\|chr12 (19986332-19987318)
	1026-1896, gnl\|Mm7\|chr17 (11841269-11837555)

	spl (0.572738)
	pan (0.471921)
	fhi (0.339155)
	liv (0.292569)
	lin (0.291206)
	lnt (0.284616)
	nca (0.273748)
	che (0.272628)
	fce (0.271592)
	ste (0.270416)
	lyg (0.266205)
	bla (0.248694)
	cbe (0.239234)
	mas (0.210305)
	cty (0.20816)
	fcc (0.197785)
	mgm (0.180343)
	fty (0.17584)
	fbs (0.175346)
	mcp (0.170648)
	cut (0.169924)
	cki (0.165235)
	nco (0.161734)
	mga (0.160205)
	bfe (0.149858)
	ski (0.146735)
	hyp (0.142837)
	pty (0.142714)
	csk (0.140746)
	ute (0.132784)
	cov (0.132153)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)
	eep (0.122564)
	clu (0.119646)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)
	jca (0.11396)
	spc (0.113366)
	nbm (0.0993246)
	jej (0.0989218)
	ldo (0.0970026)