Ss1.1-Ova1-OVR010004A11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACGGTCCGCGCGCTACTCCCCGGGCCGGAAGTGGAGAGGAACTGTCTCGGGTGCGCCCG GCCTGGCTCACCGCCTGGCAGTCACCGCTGTCGCCGCCGCCTTCGGCCAGTGCCGAGGGT TTTTGCAGCCGCCATGTCCGCCAGTGCCGTCTACGTGCTGGACCTGAAGGGCAAGGTGCT CATCTGCCGGAACTACCGCGGTGATGTGGACATGTCGGAGGTGGAGCACTTCATGCCCAT CCTGATGGAGAAGGAGGAGGAAGGGATGCTGTCACCCATCCTGGCCCACGGGGGCGTCCG CTTTATGTGGATCAAGCATAACAACCTGTATCTGGTCGCCACCTCCAAGAAGAACGCGTG TGTGTCATTGGTGTTCTCCTTCCTCTATAAGGTGGTGCAGGTGTTTTCGGAATATTTCAA GGAGCTGGAGGAGGAGAGCATCCGCGACAACTTCGTCATCATCTACGAGCTGCTGGATGA GCTCATGGACTTCGGCTACCCCCAGACCACAGACAGCAAGATCCTGCAGGAGTACATCAC TCAGGAAGGCCACAAGCTGGAAACAGGGGCCCCAAGGCCCCCAGCCACCGTCACCAACGC AGTGTCCTGGCGCTCCGAGGGCATCAAATACCGGAAGAATGAGGTGTTCTTGGACGTCAT CGAGTCTGTCAACCTCCTGGTCAGTGCCAACGGTAATGTCCTGCGCAGTGAGATTGTGGG CTCCATCAAGATGCGGGTCTTCCTGTCGGGTATGCCGGAACTGCGCCTGGGCCTCAATGA CAAGGTCCTCTTCGACAACACAGGCCGCGGCAAAAGCAAGTCCGTGGAGCTGGAGGATGT GAAGTTCCACCAGTGCGTACGGCTCTCACGCTTTGAGAATGACCGCACCATCTCCTTCAT CCCACCCGATGGCGAATTCGAGCTCATGTCTTACCGCCTCAACACCCACGTCAAGCCCTT GATCTGGATTGAGTCTGTGATTGAAAAGCATTCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACGGTCCGCGCGCTACTCCCCGGGCCGGAAGTGGAGAGGAACTGTCTCGGGTGCGCCCG GCCTGGCTCACCGCCTGGCAGTCACCGCTGTCGCCGCCGCCTTCGGCCAGTGCCGAGGGT TTTTGCAGCCGCCATGTCCGCCAGTGCCGTCTACGTGCTGGACCTGAAGGGCAAGGTGCT CATCTGCCGGAACTACCGCGGTGATGTGGACATGTCGGAGGTGGAGCACTTCATGCCCAT CCTGATGGAGAAGGAGGAGGAAGGGATGCTGTCACCCATCCTGGCCCACGGGGGCGTCCG CTTTATGTGGATCAAGCATAACAACCTGTATCTGGTCGCCACCTCCAAGAAGAACGCGTG TGTGTCATTGGTGTTCTCCTTCCTCTATAAGGTGGTGCAGGTGTTTTCGGAATATTTCAA GGAGCTGGAGGAGGAGAGCATCCGCGACAACTTCGTCATCATCTACGAGCTGCTGGATGA GCTCATGGACTTCGGCTACCCCCAGACCACAGACAGCAAGATCCTGCAGGAGTACATCAC TCAGGAAGGCCACAAGCTGGAAACAGGGGCCCCAAGGCCCCCAGCCACCGTCACCAACGC AGTGTCCTGGCGCTCCGAGGGCATCAAATACCGGAAGAATGAGGTGTTCTTGGACGTCAT CGAGTCTGTCAACCTCCTGGTCAGTGCCAACGGTAATGTCCTGCGCAGTGAGATTGTGGG CTCCATCAAGATGCGGGTCTTCCTGTCGGGTATGCCGGAACTGCGCCTGGGCCTCAATGA CAAGGTCCTCTTCGACAACACAGGCCGCGGCAAAAGCAAGTCCGTGGAGCTGGAGGATGT GAAGTTCCACCAGTGCGTACGGCTCTCACGCTTTGAGAATGACCGCACCATCTCCTTCAT CCCACCCGATGGCGAATTCGAGCTCATGTCTTACCGCCTCAACACCCACGTCAAGCCCTT GATCTGGATTGAGTCTGTGATTGAAAAGCATTCCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 532-622, - strand, RNAz p=0.595096 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 532-622, - strand, RNAz p=0.595096 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-177, gnl|bosTau2|chr7 (5136098-5136275) | |
| 1-177, gnl|canFam2|chr20 (49293376-49293015) | |
| 1-177, gnl|echTel1|scaffold_277247 (43833-43464) | |
| 1-177, gnl|galGal2|chr28 (3707295-3707010) | |
| 1-177, gnl|hg17|chr19 (16169577-16169946) | |
| 1-177, gnl|Hg17|chr19 (16169695-16169881) | |
| 1-177, gnl|loxAfr1|scaffold_138193 (3481-3836) | |
| 1-177, gnl|mm7|chr8 (70762973-70763321) | |
| 1-177, gnl|Mm7|chr8 (70763080-70763256) | |
| 1-177, gnl|monDom2|scaffold_100 (2641511-2641963) | |
| 1-177, gnl|oryCun1|scaffold_155779 (7831-7464) | |
| 1-177, gnl|panTro1|chr20 (16847319-16847688) | |
| 1-177, gnl|rheMac2|chr19 (15734900-15735251) | |
| 1-177, gnl|rn3|chr16 (18024947-18024591) | |
| 179-330, gnl|bosTau2|chr7 (10940434-10940283) | |
| 179-330, gnl|Hg17|chr19 (10555743-10555592) | |
| 179-330, gnl|Mm7|chr9 (21186347-21186196) | |
| 523-684, gnl|bosTau2|chr7 (10937779-10937619) | |
| 523-684, gnl|Hg17|chr19 (10553317-10553158) | |
| 523-684, gnl|Mm7|chr9 (21182196-21182046) | |
| 532-681, gnl|bosTau2|chr7 (5147417-5147566) | |
| 532-681, gnl|canFam2|chr20 (49282979-49282791) | |
| 532-681, gnl|danRer3|chr23 (46649101-46648912) | |
| 532-681, gnl|echTel1|scaffold_324744 (6316-6119) | |
| 532-681, gnl|fr1|chrUn (18724066-18723894) | |
| 532-681, gnl|galGal2|chr28 (3705280-3705090) | |
| 532-681, gnl|hg17|chr19 (16180816-16181006) | |
| 532-681, gnl|Hg17|chr19 (16180841-16180990) | |
| 532-681, gnl|loxAfr1|scaffold_60350 (7130-6943) | |
| 532-681, gnl|mm7|chr8 (70773668-70773858) | |
| 532-681, gnl|Mm7|chr8 (70773692-70773841) | |
| 532-681, gnl|monDom2|scaffold_100 (2659019-2659208) | |
| 532-681, gnl|oryCun1|scaffold_208711 (7713-7580) | |
| 532-681, gnl|panTro1|chr20 (16861360-16861550) | |
| 532-681, gnl|rheMac2|chr19 (15745783-15745973) | |
| 532-681, gnl|rn3|chr16 (18015582-18015410) | |
| 532-681, gnl|tetNig1|chr1 (16255744-16255589) | |
| 532-681, gnl|xenTro1|scaffold_898 (282585-282737) | |
| 809-951, gnl|bosTau2|chr7 (5157800-5157942) | |
| 809-951, gnl|Hg17|chr19 (16199361-16199503) | |
| 809-951, gnl|Mm7|chr8 (70775848-70775990) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-177, gnl|bosTau2|chr7 (5136098-5136275) | |
| 1-177, gnl|canFam2|chr20 (49293376-49293015) | |
| 1-177, gnl|echTel1|scaffold_277247 (43833-43464) | |
| 1-177, gnl|galGal2|chr28 (3707295-3707010) | |
| 1-177, gnl|hg17|chr19 (16169577-16169946) | |
| 1-177, gnl|Hg17|chr19 (16169695-16169881) | |
| 1-177, gnl|loxAfr1|scaffold_138193 (3481-3836) | |
| 1-177, gnl|mm7|chr8 (70762973-70763321) | |
| 1-177, gnl|Mm7|chr8 (70763080-70763256) | |
| 1-177, gnl|monDom2|scaffold_100 (2641511-2641963) | |
| 1-177, gnl|oryCun1|scaffold_155779 (7831-7464) | |
| 1-177, gnl|panTro1|chr20 (16847319-16847688) | |
| 1-177, gnl|rheMac2|chr19 (15734900-15735251) | |
| 1-177, gnl|rn3|chr16 (18024947-18024591) | |
| 179-330, gnl|bosTau2|chr7 (10940434-10940283) | |
| 179-330, gnl|Hg17|chr19 (10555743-10555592) | |
| 179-330, gnl|Mm7|chr9 (21186347-21186196) | |
| 523-684, gnl|bosTau2|chr7 (10937779-10937619) | |
| 523-684, gnl|Hg17|chr19 (10553317-10553158) | |
| 523-684, gnl|Mm7|chr9 (21182196-21182046) | |
| 532-681, gnl|bosTau2|chr7 (5147417-5147566) | |
| 532-681, gnl|canFam2|chr20 (49282979-49282791) | |
| 532-681, gnl|danRer3|chr23 (46649101-46648912) | |
| 532-681, gnl|echTel1|scaffold_324744 (6316-6119) | |
| 532-681, gnl|fr1|chrUn (18724066-18723894) | |
| 532-681, gnl|galGal2|chr28 (3705280-3705090) | |
| 532-681, gnl|hg17|chr19 (16180816-16181006) | |
| 532-681, gnl|Hg17|chr19 (16180841-16180990) | |
| 532-681, gnl|loxAfr1|scaffold_60350 (7130-6943) | |
| 532-681, gnl|mm7|chr8 (70773668-70773858) | |
| 532-681, gnl|Mm7|chr8 (70773692-70773841) | |
| 532-681, gnl|monDom2|scaffold_100 (2659019-2659208) | |
| 532-681, gnl|oryCun1|scaffold_208711 (7713-7580) | |
| 532-681, gnl|panTro1|chr20 (16861360-16861550) | |
| 532-681, gnl|rheMac2|chr19 (15745783-15745973) | |
| 532-681, gnl|rn3|chr16 (18015582-18015410) | |
| 532-681, gnl|tetNig1|chr1 (16255744-16255589) | |
| 532-681, gnl|xenTro1|scaffold_898 (282585-282737) | |
| 809-951, gnl|bosTau2|chr7 (5157800-5157942) | |
| 809-951, gnl|Hg17|chr19 (16199361-16199503) | |
| 809-951, gnl|Mm7|chr8 (70775848-70775990) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) | |
| cbr (0.127975) | |
| cty (0.10408) |