Ss1.1-Ova1-OVR010004E02.5
|
TGAGGTCACAAGACAAGTGGCTCAGTGCAAATGTGCAAAAAGGTTTCAGGTGGAGCAGAT
TGGAGAGAATAAATACCGGTTTGGGGACTCCCAGCAGCTGCGGCTGGTCCGCATCCTGCG
CAGCACAGTGATGGTCCGCGTTGGTGGAGGATGGATGGCCCTGGATGAATTTCTCGTGAA
AAATGACCCCTGCCGAGCACGGGGTAGAACTAACATTGAACTTCGAGAGAAATTCATCCT
GCCTGAGGGGGCATCCCAGGGAATGACCCCATTCCGATCACGGGGTCGAAGGTCCAAACC
ATCTTCCCGGGCGGCCTCCCCTACACGCTCCAGCTCGAGCGCTAGTCAGAGTAACCACAG
CTGCACATCCATGCCGTCTTCTCCAGCCACCCCAGCCAGTGGCACCAAGGTTATTCCATC
CACAGGCAGCAAGTTGAAACGACCGACACCAGCTTTTCATTCAAGCCGAACATCCCTTGC
TGGCGATACCAGCAATAGTTCTTCCCCAGCCTCCACAGGTGCCAAAACTAACCGGGCAGA
CCCTAAAAAGTCAGCCAGTCGCCCTGGGAGTCGAGCTGGGAGTCGGGCCGGGAGTCGGGC
CAGCAGCCGGCGAGGGAGTGATGCCTCTGACTTTGACCTTTTGGAGACGCAGTCAGCTTG
TTCAGACACTTCAGAGAGTAGCGCCGCAGGGGGCCAGGGCACCTCCAGGAGAGGGCTGAA
CAAGCCTTCCAAAATCCCCACCATGTCTAAGAAGACCACCACTGCCTCCCCCAGGACTCC
GGGTCCCAAGCGATAACACTGTACAAGCACCCCCCAGCCTCTCTCCACGTTGATCCTGCT
CCATACATTGGGTGTATATTTATTCTGAATGGGAGAAGTTATATTGTTAAAATTGTAAAA
GAATAATTGTGTTATGAAGCTGCCTTATTTTTTTTTCTTTTTGTAAGTTACTATTTTCAT
GTGAATATTTATGTAGATAAAGTTTGCCTCCTGGTAACCCTGTAATGGATGGGGCCCAGA
AATGAAATATTTGAGAAAAACAAGCGAAAAGGTCAAGACGCAAATGTGTATTAAAAAAAA
AAAAAGAAGAAAAGAAAAGCCTCTAAATAGGGTTTCTGCGCGGTGCAGGGTTGTAAACCT
GCTTTATCTTTTAGGATTATTCCTAAATGCATCTTCTTTATAAACTTGACTTGCTATGTC
AGCAAGATAAATTATATTAAAAAAATAAGAATCCTGCAGTGTTTAAGGAACTCTTTTTTT
TTTTTTTTTTTGGTAAATCACAAACACCTCAACTAGCAAGAACTGAGGGGAGGGCACTTC
TGAGTGCTTTTCCATGGTTTTTAATGTTGTGTGTGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGAGGTCACAAGACAAGTGGCTCAGTGCAAATGTGCAAAAAGGTTTCAGGTGGAGCAGAT
TGGAGAGAATAAATACCGGTTTGGGGACTCCCAGCAGCTGCGGCTGGTCCGCATCCTGCG
CAGCACAGTGATGGTCCGCGTTGGTGGAGGATGGATGGCCCTGGATGAATTTCTCGTGAA
AAATGACCCCTGCCGAGCACGGGGTAGAACTAACATTGAACTTCGAGAGAAATTCATCCT
GCCTGAGGGGGCATCCCAGGGAATGACCCCATTCCGATCACGGGGTCGAAGGTCCAAACC
ATCTTCCCGGGCGGCCTCCCCTACACGCTCCAGCTCGAGCGCTAGTCAGAGTAACCACAG
CTGCACATCCATGCCGTCTTCTCCAGCCACCCCAGCCAGTGGCACCAAGGTTATTCCATC
CACAGGCAGCAAGTTGAAACGACCGACACCAGCTTTTCATTCAAGCCGAACATCCCTTGC
TGGCGATACCAGCAATAGTTCTTCCCCAGCCTCCACAGGTGCCAAAACTAACCGGGCAGA
CCCTAAAAAGTCAGCCAGTCGCCCTGGGAGTCGAGCTGGGAGTCGGGCCGGGAGTCGGGC
CAGCAGCCGGCGAGGGAGTGATGCCTCTGACTTTGACCTTTTGGAGACGCAGTCAGCTTG
TTCAGACACTTCAGAGAGTAGCGCCGCAGGGGGCCAGGGCACCTCCAGGAGAGGGCTGAA
CAAGCCTTCCAAAATCCCCACCATGTCTAAGAAGACCACCACTGCCTCCCCCAGGACTCC
GGGTCCCAAGCGATAACACTGTACAAGCACCCCCCAGCCTCTCTCCACGTTGATCCTGCT
CCATACATTGGGTGTATATTTATTCTGAATGGGAGAAGTTATATTGTTAAAATTGTAAAA
GAATAATTGTGTTATGAAGCTGCCTTATTTTTTTTTCTTTTTGTAAGTTACTATTTTCAT
GTGAATATTTATGTAGATAAAGTTTGCCTCCTGGTAACCCTGTAATGGATGGGGCCCAGA
AATGAAATATTTGAGAAAAACAAGCGAAAAGGTCAAGACGCAAATGTGTATTAAAAAAAA
AAAAAGAAGAAAAGAAAAGCCTCTAAATAGGGTTTCTGCGCGGTGCAGGGTTGTAAACCT
GCTTTATCTTTTAGGATTATTCCTAAATGCATCTTCTTTATAAACTTGACTTGCTATGTC
AGCAAGATAAATTATATTAAAAAAATAAGAATCCTGCAGTGTTTAAGGAACTCTTTTTTT
TTTTTTTTTTTGGTAAATCACAAACACCTCAACTAGCAAGAACTGAGGGGAGGGCACTTC
TGAGTGCTTTTCCATGGTTTTTAATGTTGTGTGTGA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
76-193, gnl|bosTau2|chr23 (1414098-1413981) |
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76-193, gnl|canFam2|chr12 (26725833-26725931) |
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76-193, gnl|danRer3|chr19 (67729865-67729961) |
|
76-193, gnl|dasNov1|scaffold_104974 (3871-3969) |
|
76-193, gnl|echTel1|scaffold_309957 (212799-212701) |
|
76-193, gnl|fr1|chrUn (83354058-83354154) |
|
76-193, gnl|galGal2|chr3 (85434964-85434866) |
|
76-193, gnl|hg17|chr6 (56438829-56438927) |
|
76-193, gnl|Hg17|chr6 (56438956-56438839) |
|
76-193, gnl|loxAfr1|scaffold_217 (92737-92835) |
|
76-193, gnl|mm7|chr1 (34523070-34522972) |
|
76-193, gnl|Mm7|chr1 (34522941-34523058) |
|
76-193, gnl|monDom2|scaffold_0 (179007341-179007243) |
|
76-193, gnl|oryCun1|scaffold_199249 (36163-36261) |
|
76-193, gnl|panTro1|chr5 (57730249-57730347) |
|
76-193, gnl|rheMac2|chr4 (56107735-56107833) |
|
76-193, gnl|rn3|chr9 (33044102-33044004) |
|
76-193, gnl|tetNig1|chr17 (4353754-4353658) |
|
76-193, gnl|xenTro1|scaffold_833 (201826-201924) |
| |
|
537-1353, gnl|bosTau2|chr3 (73136903-73136111) |
|
537-1353, gnl|Hg17|chr1 (39620300-39621077) |
|
537-1353, gnl|Mm7|chr4 (122795794-122795013) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
76-193, gnl|bosTau2|chr23 (1414098-1413981) |
|
76-193, gnl|canFam2|chr12 (26725833-26725931) |
|
76-193, gnl|danRer3|chr19 (67729865-67729961) |
|
76-193, gnl|dasNov1|scaffold_104974 (3871-3969) |
|
76-193, gnl|echTel1|scaffold_309957 (212799-212701) |
|
76-193, gnl|fr1|chrUn (83354058-83354154) |
|
76-193, gnl|galGal2|chr3 (85434964-85434866) |
|
76-193, gnl|hg17|chr6 (56438829-56438927) |
|
76-193, gnl|Hg17|chr6 (56438956-56438839) |
|
76-193, gnl|loxAfr1|scaffold_217 (92737-92835) |
|
76-193, gnl|mm7|chr1 (34523070-34522972) |
|
76-193, gnl|Mm7|chr1 (34522941-34523058) |
|
76-193, gnl|monDom2|scaffold_0 (179007341-179007243) |
|
76-193, gnl|oryCun1|scaffold_199249 (36163-36261) |
|
76-193, gnl|panTro1|chr5 (57730249-57730347) |
|
76-193, gnl|rheMac2|chr4 (56107735-56107833) |
|
76-193, gnl|rn3|chr9 (33044102-33044004) |
|
76-193, gnl|tetNig1|chr17 (4353754-4353658) |
|
76-193, gnl|xenTro1|scaffold_833 (201826-201924) |
| |
|
537-1353, gnl|bosTau2|chr3 (73136903-73136111) |
|
537-1353, gnl|Hg17|chr1 (39620300-39621077) |
|
537-1353, gnl|Mm7|chr4 (122795794-122795013) |
|
cbl (1.03318) |
|
lnt (0.284616) |
|
fce (0.271592) |
|
ese (0.253004) |
|
hea (0.204499) |
|
sag (0.182715) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cut (0.169924) |
|
cki (0.165235) |
|
nco (0.161734) |
|
cag (0.151194) |
|
ski (0.146735) |
|
liv (0.146284) |
|
ssp (0.13552) |
|
lyg (0.133103) |
|
ova (0.129132) |
|
ecc (0.115035) |
|
spc (0.113366) |
|
cbl (1.03318) |
|
lnt (0.284616) |
|
fce (0.271592) |
|
ese (0.253004) |
|
hea (0.204499) |
|
sag (0.182715) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cut (0.169924) |
|
cki (0.165235) |
|
nco (0.161734) |
|
cag (0.151194) |
|
ski (0.146735) |
|
liv (0.146284) |
|
ssp (0.13552) |
|
lyg (0.133103) |
|
ova (0.129132) |
|
ecc (0.115035) |
|
spc (0.113366) |
