Ss1.1-Ova1-OVR010004F08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGTGTGGAGCGAGCGGCAGCGGGAGCAGCGGGGACAGCCTGGACAAGAGCATTACGCTG CCCCCCGACGAGATCTTCCGCAACCTGGAGAACGCCAAGCGCTTCGCCATAGATATAGGC GGCTCTCTGACCAAGCTGGCCTACTACTCCACCGTGCAGCACAAAGTGGCCCGAGTGCGC TCCTTTGACCACTCGGGCAAGGACACAGAGCAGGACCACGAGCCACCCTACGAGATCTCC GTCCAGGAGGAGGTCACCGCCAGGCTGCACTTTGTCAAGTTCGAGAACACCTACATAGAA GCCTGCCTGGACTTCATCAAGGACCACCTGGTTAACACTGAGACGAAGGTCATCCAGGCG ACCGGGGGCGGGGCGTACAAGTTCAAAGACCTCATTGAAGAGAAGCTGCAGCTGAAGGTT GACAAGGAGGACGTGATGACCTGCCTGATAAAGGGCTGCAACTTCGTGCTGAAAAACATC CCGCACGAGGCGTTCGTCTACCAGAAGGACTCCGACCCTGAGTTCCGGTTCCAGACGAAC CACCCCAACATCTTCCCGTACCTTCTCGTCAACATCGGCTCTGGCGTCTCTATTGTAAAG GTAGAGACGGAGGACAGATTTGAGTGGATCGGCGGCAGCTCCATCGGGGGTGGCACCTTC TGGGGGCTCGGGGCCCTGCTCACCAAAACCAAGAAGTTCGACGAGCTGCTGCACCTGGCG TCCCGAGGCCAGCACGCCAACGTGGACATGCTGGTGCAGGACGTCTACGGAGGGGCGCAC CAGACGCTGGGGCTCAGCGGCAACCTCATCGCCAGCAGCTTTGGGAAGTCGGCCACTGCA GACAGAGAGTTCTCCAGGGAGGACATGGCCAAGAGCCTGCTGCACATGATCAGCAACGAC ATCGGGCAGCTCGCCTGCCTCTATGCCAGGCTCCACTGCCTGGACCGGGTCTACTTCGGC GGCTTCTTCATCCGCGGCCACCCGGTCACCATGCGCACCATCACCTACAGCATCAATTTC TTCTCCAAGGGGGAAGTCCAGGCGCTGTTCCTGAGGCACGAGGGCTACCTGGGAGCCATC GGCGCGTTTCTCAAGGGAGCGGAGCAAGACAACCCAAACCAGTACAGCTGGGGAGAGAAC TACGCCGGCAGCTCCGGGCTGATGAGCTCGTCGCCTGAGCTCTGCCCGACCCAGAGGGCC CGGAGCGGCACGTTTGACTTGCTGGAAATGGACCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGTGTGGAGCGAGCGGCAGCGGGAGCAGCGGGGACAGCCTGGACAAGAGCATTACGCTG CCCCCCGACGAGATCTTCCGCAACCTGGAGAACGCCAAGCGCTTCGCCATAGATATAGGC GGCTCTCTGACCAAGCTGGCCTACTACTCCACCGTGCAGCACAAAGTGGCCCGAGTGCGC TCCTTTGACCACTCGGGCAAGGACACAGAGCAGGACCACGAGCCACCCTACGAGATCTCC GTCCAGGAGGAGGTCACCGCCAGGCTGCACTTTGTCAAGTTCGAGAACACCTACATAGAA GCCTGCCTGGACTTCATCAAGGACCACCTGGTTAACACTGAGACGAAGGTCATCCAGGCG ACCGGGGGCGGGGCGTACAAGTTCAAAGACCTCATTGAAGAGAAGCTGCAGCTGAAGGTT GACAAGGAGGACGTGATGACCTGCCTGATAAAGGGCTGCAACTTCGTGCTGAAAAACATC CCGCACGAGGCGTTCGTCTACCAGAAGGACTCCGACCCTGAGTTCCGGTTCCAGACGAAC CACCCCAACATCTTCCCGTACCTTCTCGTCAACATCGGCTCTGGCGTCTCTATTGTAAAG GTAGAGACGGAGGACAGATTTGAGTGGATCGGCGGCAGCTCCATCGGGGGTGGCACCTTC TGGGGGCTCGGGGCCCTGCTCACCAAAACCAAGAAGTTCGACGAGCTGCTGCACCTGGCG TCCCGAGGCCAGCACGCCAACGTGGACATGCTGGTGCAGGACGTCTACGGAGGGGCGCAC CAGACGCTGGGGCTCAGCGGCAACCTCATCGCCAGCAGCTTTGGGAAGTCGGCCACTGCA GACAGAGAGTTCTCCAGGGAGGACATGGCCAAGAGCCTGCTGCACATGATCAGCAACGAC ATCGGGCAGCTCGCCTGCCTCTATGCCAGGCTCCACTGCCTGGACCGGGTCTACTTCGGC GGCTTCTTCATCCGCGGCCACCCGGTCACCATGCGCACCATCACCTACAGCATCAATTTC TTCTCCAAGGGGGAAGTCCAGGCGCTGTTCCTGAGGCACGAGGGCTACCTGGGAGCCATC GGCGCGTTTCTCAAGGGAGCGGAGCAAGACAACCCAAACCAGTACAGCTGGGGAGAGAAC TACGCCGGCAGCTCCGGGCTGATGAGCTCGTCGCCTGAGCTCTGCCCGACCCAGAGGGCC CGGAGCGGCACGTTTGACTTGCTGGAAATGGACCGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 846-964, + strand, RNAz p=0.854432 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 846-964, + strand, RNAz p=0.854432 |
| Aligned organism(s): 66 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
| 1-119, gnl|bosTau2|chr16 (36451441-36451559) | |
| 1-119, gnl|canFam2|chr5 (60388723-60388865) | |
| 1-119, gnl|danRer3|chrNA (217867934-217867805) | |
| 1-119, gnl|echTel1|scaffold_238748 (716-858) | |
| 1-119, gnl|fr1|chrUn (248368954-248369096) | |
| 1-119, gnl|galGal2|chr21 (1332891-1332742) | |
| 1-119, gnl|hg17|chr1 (2490056-2490198) | |
| 1-119, gnl|Hg17|chr1 (2490182-2490064) | |
| 1-119, gnl|mm7|chr4 (153953822-153953680) | |
| 1-119, gnl|Mm7|chr4 (153953694-153953812) | |
| 1-119, gnl|monDom2|scaffold_183 (764800-764942) | |
| 1-119, gnl|panTro1|chr1 (2411421-2411545) | |
| 1-119, gnl|rheMac2|chr1 (5602783-5602925) | |
| 1-119, gnl|rn3|chr5 (171777674-171777532) | |
| 1-119, gnl|tetNig1|chrUn_random (17872981-17872878) | |
| 1-119, gnl|xenTro1|scaffold_177 (273895-273766) | |
| 200-417, gnl|bosTau2|chr16 (36455790-36456007) | |
| 200-417, gnl|canFam2|chr5 (60384093-60384323) | |
| 200-417, gnl|danRer3|chrNA (217870277-217870052) | |
| 200-417, gnl|dasNov1|scaffold_153446 (6710-6475) | |
| 200-417, gnl|fr1|chrUn (248368062-248368288) | |
| 200-417, gnl|galGal2|chr21 (1336153-1335924) | |
| 200-417, gnl|hg17|chr1 (2484697-2484932) | |
| 200-417, gnl|Hg17|chr1 (2484918-2484701) | |
| 200-417, gnl|loxAfr1|scaffold_14606 (10379-10616) | |
| 200-417, gnl|mm7|chr4 (153959336-153959104) | |
| 200-417, gnl|Mm7|chr4 (153959113-153959330) | |
| 200-417, gnl|monDom2|scaffold_183 (751854-752082) | |
| 200-417, gnl|panTro1|chr1 (2406081-2406316) | |
| 200-417, gnl|rheMac2|chr1 (5597439-5597674) | |
| 200-417, gnl|rn3|chr5 (171783041-171782809) | |
| 200-417, gnl|tetNig1|chrUn_random (17874197-17873967) | |
| 200-417, gnl|xenTro1|scaffold_177 (283389-283160) | |
| 689-843, gnl|bosTau2|chr16 (36457378-36457532) | |
| 689-843, gnl|canFam2|chr5 (60382589-60382738) | |
| 689-843, gnl|danRer3|chrNA (217882640-217882494) | |
| 689-843, gnl|fr1|chrUn (248366062-248366208) | |
| 689-843, gnl|galGal2|chr21 (1340723-1340574) | |
| 689-843, gnl|hg17|chr1 (2483398-2483547) | |
| 689-843, gnl|Hg17|chr1 (2483560-2483406) | |
| 689-843, gnl|loxAfr1|scaffold_14606 (8413-8561) | |
| 689-843, gnl|mm7|chr4 (153960575-153960426) | |
| 689-843, gnl|Mm7|chr4 (153960410-153960565) | |
| 689-843, gnl|monDom2|scaffold_183 (748369-748518) | |
| 689-843, gnl|panTro1|chr1 (2404781-2404930) | |
| 689-843, gnl|rheMac2|chr1 (5596165-5596314) | |
| 689-843, gnl|rn3|chr5 (171784262-171784113) | |
| 689-843, gnl|tetNig1|chrUn_random (17876571-17876424) | |
| 689-843, gnl|xenTro1|scaffold_177 (286227-286080) | |
| 846-1030, gnl|bosTau2|chr16 (36457620-36457804) | |
| 846-1030, gnl|canFam2|chr5 (60382321-60382525) | |
| 846-1030, gnl|danRer3|chrNA (217883167-217882976) | |
| 846-1030, gnl|echTel1|scaffold_167678 (3059-3260) | |
| 846-1030, gnl|fr1|chrUn (248365164-248365351) | |
| 846-1030, gnl|galGal2|chr21 (1341763-1341557) | |
| 846-1030, gnl|hg17|chr1 (2482743-2482951) | |
| 846-1030, gnl|Hg17|chr1 (2482927-2482743) | |
| 846-1030, gnl|loxAfr1|scaffold_14606 (6787-6991) | |
| 846-1030, gnl|mm7|chr4 (153961099-153960891) | |
| 846-1030, gnl|Mm7|chr4 (153960913-153961097) | |
| 846-1030, gnl|monDom2|scaffold_183 (747217-747423) | |
| 846-1030, gnl|panTro1|chr1 (2404093-2404297) | |
| 846-1030, gnl|rheMac2|chr1 (5594757-5594965) | |
| 846-1030, gnl|rn3|chr5 (171784783-171784576) | |
| 846-1030, gnl|tetNig1|chrUn_random (17876813-17876626) | |
| 846-1030, gnl|xenTro1|scaffold_177 (289255-289064) |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-119, gnl|bosTau2|chr16 (36451441-36451559) | |
| 1-119, gnl|canFam2|chr5 (60388723-60388865) | |
| 1-119, gnl|danRer3|chrNA (217867934-217867805) | |
| 1-119, gnl|echTel1|scaffold_238748 (716-858) | |
| 1-119, gnl|fr1|chrUn (248368954-248369096) | |
| 1-119, gnl|galGal2|chr21 (1332891-1332742) | |
| 1-119, gnl|hg17|chr1 (2490056-2490198) | |
| 1-119, gnl|Hg17|chr1 (2490182-2490064) | |
| 1-119, gnl|mm7|chr4 (153953822-153953680) | |
| 1-119, gnl|Mm7|chr4 (153953694-153953812) | |
| 1-119, gnl|monDom2|scaffold_183 (764800-764942) | |
| 1-119, gnl|panTro1|chr1 (2411421-2411545) | |
| 1-119, gnl|rheMac2|chr1 (5602783-5602925) | |
| 1-119, gnl|rn3|chr5 (171777674-171777532) | |
| 1-119, gnl|tetNig1|chrUn_random (17872981-17872878) | |
| 1-119, gnl|xenTro1|scaffold_177 (273895-273766) | |
| 200-417, gnl|bosTau2|chr16 (36455790-36456007) | |
| 200-417, gnl|canFam2|chr5 (60384093-60384323) | |
| 200-417, gnl|danRer3|chrNA (217870277-217870052) | |
| 200-417, gnl|dasNov1|scaffold_153446 (6710-6475) | |
| 200-417, gnl|fr1|chrUn (248368062-248368288) | |
| 200-417, gnl|galGal2|chr21 (1336153-1335924) | |
| 200-417, gnl|hg17|chr1 (2484697-2484932) | |
| 200-417, gnl|Hg17|chr1 (2484918-2484701) | |
| 200-417, gnl|loxAfr1|scaffold_14606 (10379-10616) | |
| 200-417, gnl|mm7|chr4 (153959336-153959104) | |
| 200-417, gnl|Mm7|chr4 (153959113-153959330) | |
| 200-417, gnl|monDom2|scaffold_183 (751854-752082) | |
| 200-417, gnl|panTro1|chr1 (2406081-2406316) | |
| 200-417, gnl|rheMac2|chr1 (5597439-5597674) | |
| 200-417, gnl|rn3|chr5 (171783041-171782809) | |
| 200-417, gnl|tetNig1|chrUn_random (17874197-17873967) | |
| 200-417, gnl|xenTro1|scaffold_177 (283389-283160) | |
| 689-843, gnl|bosTau2|chr16 (36457378-36457532) | |
| 689-843, gnl|canFam2|chr5 (60382589-60382738) | |
| 689-843, gnl|danRer3|chrNA (217882640-217882494) | |
| 689-843, gnl|fr1|chrUn (248366062-248366208) | |
| 689-843, gnl|galGal2|chr21 (1340723-1340574) | |
| 689-843, gnl|hg17|chr1 (2483398-2483547) | |
| 689-843, gnl|Hg17|chr1 (2483560-2483406) | |
| 689-843, gnl|loxAfr1|scaffold_14606 (8413-8561) | |
| 689-843, gnl|mm7|chr4 (153960575-153960426) | |
| 689-843, gnl|Mm7|chr4 (153960410-153960565) | |
| 689-843, gnl|monDom2|scaffold_183 (748369-748518) | |
| 689-843, gnl|panTro1|chr1 (2404781-2404930) | |
| 689-843, gnl|rheMac2|chr1 (5596165-5596314) | |
| 689-843, gnl|rn3|chr5 (171784262-171784113) | |
| 689-843, gnl|tetNig1|chrUn_random (17876571-17876424) | |
| 689-843, gnl|xenTro1|scaffold_177 (286227-286080) | |
| 846-1030, gnl|bosTau2|chr16 (36457620-36457804) | |
| 846-1030, gnl|canFam2|chr5 (60382321-60382525) | |
| 846-1030, gnl|danRer3|chrNA (217883167-217882976) | |
| 846-1030, gnl|echTel1|scaffold_167678 (3059-3260) | |
| 846-1030, gnl|fr1|chrUn (248365164-248365351) | |
| 846-1030, gnl|galGal2|chr21 (1341763-1341557) | |
| 846-1030, gnl|hg17|chr1 (2482743-2482951) | |
| 846-1030, gnl|Hg17|chr1 (2482927-2482743) | |
| 846-1030, gnl|loxAfr1|scaffold_14606 (6787-6991) | |
| 846-1030, gnl|mm7|chr4 (153961099-153960891) | |
| 846-1030, gnl|Mm7|chr4 (153960913-153961097) | |
| 846-1030, gnl|monDom2|scaffold_183 (747217-747423) | |
| 846-1030, gnl|panTro1|chr1 (2404093-2404297) | |
| 846-1030, gnl|rheMac2|chr1 (5594757-5594965) | |
| 846-1030, gnl|rn3|chr5 (171784783-171784576) | |
| 846-1030, gnl|tetNig1|chrUn_random (17876813-17876626) | |
| 846-1030, gnl|xenTro1|scaffold_177 (289255-289064) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) |