Non-Coding RNA Search

Ss1.1-Ova1-OVR010004G02.5

Sequence:


               
               GCCCAGGAGTCTCCCCGTCCCCGAGTCGTCCTCGGGACGCCCCGGGCCCCGCTGGTTCCT
GGCACAACCAGATGCTGCGCAGCAATCACCGATTCCCCATCACCAATTCGGCTGGCGTCC
CCGAGGCCACGGGCTCCCCTAGGCTCCCCGTGGCCCCGAGTTATAGTCGGGACCCCTCGG
TCGAGGGTGATTGTCGGGTCTCCGCGGGCGCGAGTCGCTGGGGCGGATCAGGCCTCTGCG
CCTTCTCCAGGCGCCCCGCAAAGCCGCAGGCAAGATGAACATCCTGGCGCCAGTGCGGAG
GGACCGCGTCCTGGCGGAGCTGCCCCAGTGCCTGAGGAAGGAGGCCGCTTTGCACGTGCG
CAAAGACTTCCACCCCCGCGTCACCTGCGCCTGCCAGGAGCACCGGACAGGCACCGTGGG
ATTTAAGATCTCCAAGGTCATTGTGGTGGGGGACCTGTCGGTGGGGAAGACTTGTCTCAT
TAATAGGTTCTGCAAAGACACGTTTGATAAGAACTATAAGGCCACCATTGGAGTGGACTT
TGAGATGGAACGATTTGAGGTGCTGGGCGTCCCCTTCAGTTTGCAGCTCTGGGATACCGC
TGGACAGGAGAGGTTCAAATGCATTGCATCAACTTACTACCGTGGCGCTCAAGCCATCAT
CATTGTCTTCAACCTGAATGATGTGGCCTCCCTGGAACATACCAAGCAGTGGCTAGCGGA
TGCGCTCAAGGAGAATGACCCTTCCAGTGTGCTTCTCTTTCTCGTGGGCTCCAAGAAGGA
CCTGAGTACTCCTGCTCAGTACGTGCTGATGGAGAAGGATGCACTCAAGGTGGCCCACGA
GATGAAGGCCGAGTACTGGGCAGTCTCCTCTCTTACGGGTGAAAATGTCCGGGAATTCTT
CTTCCGTGTGGCGGCACTGACCTTTGAGGCCAACGTGCTGGCTGAGCTGGAGAAATCAGG
GTCCCGGCGCATTGGGGACGTTGTCCGTCTCAACAGTGATGACAGCAACCTCTACCTAAC
TGCTAGCAAGAAGAAGCCCGCGTGCTGCCCATGACGGGTGAGGGGACTGTCCAGAGACTG
CCCAGCTTCAGGGCGCCGTGCCACCTTGACTCTCCCAGAGCTTAACTCTCCAGGACATTT
GCACTGACTGTTTTTCCAGACCAAAGAACTGCCCCTTGGCAGTATCCCCAGATTGGTAGC
TGGGACCAGGCGAGTCCTGTCCTCAGGCACCGTGCCAAAGACCTCCCTTGCCCCACCTCC
AGGGGCCCTGCAGGCTGCTGTGGTGGGGAGGTGGGCCCTGCTGCTCTTGCTCAGCCTGCT
GGGCCCTCTGGGTATGAGGATGCTTAACAGTTCCAGCCTCACACTGTGCCTTATGCATTA
AAATATCTGTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCAGGAGTCTCCCCGTCCCCGAGTCGTCCTCGGGACGCCCCGGGCCCCGCTGGTTCCT
GGCACAACCAGATGCTGCGCAGCAATCACCGATTCCCCATCACCAATTCGGCTGGCGTCC
CCGAGGCCACGGGCTCCCCTAGGCTCCCCGTGGCCCCGAGTTATAGTCGGGACCCCTCGG
TCGAGGGTGATTGTCGGGTCTCCGCGGGCGCGAGTCGCTGGGGCGGATCAGGCCTCTGCG
CCTTCTCCAGGCGCCCCGCAAAGCCGCAGGCAAGATGAACATCCTGGCGCCAGTGCGGAG
GGACCGCGTCCTGGCGGAGCTGCCCCAGTGCCTGAGGAAGGAGGCCGCTTTGCACGTGCG
CAAAGACTTCCACCCCCGCGTCACCTGCGCCTGCCAGGAGCACCGGACAGGCACCGTGGG
ATTTAAGATCTCCAAGGTCATTGTGGTGGGGGACCTGTCGGTGGGGAAGACTTGTCTCAT
TAATAGGTTCTGCAAAGACACGTTTGATAAGAACTATAAGGCCACCATTGGAGTGGACTT
TGAGATGGAACGATTTGAGGTGCTGGGCGTCCCCTTCAGTTTGCAGCTCTGGGATACCGC
TGGACAGGAGAGGTTCAAATGCATTGCATCAACTTACTACCGTGGCGCTCAAGCCATCAT
CATTGTCTTCAACCTGAATGATGTGGCCTCCCTGGAACATACCAAGCAGTGGCTAGCGGA
TGCGCTCAAGGAGAATGACCCTTCCAGTGTGCTTCTCTTTCTCGTGGGCTCCAAGAAGGA
CCTGAGTACTCCTGCTCAGTACGTGCTGATGGAGAAGGATGCACTCAAGGTGGCCCACGA
GATGAAGGCCGAGTACTGGGCAGTCTCCTCTCTTACGGGTGAAAATGTCCGGGAATTCTT
CTTCCGTGTGGCGGCACTGACCTTTGAGGCCAACGTGCTGGCTGAGCTGGAGAAATCAGG
GTCCCGGCGCATTGGGGACGTTGTCCGTCTCAACAGTGATGACAGCAACCTCTACCTAAC
TGCTAGCAAGAAGAAGCCCGCGTGCTGCCCATGACGGGTGAGGGGACTGTCCAGAGACTG
CCCAGCTTCAGGGCGCCGTGCCACCTTGACTCTCCCAGAGCTTAACTCTCCAGGACATTT
GCACTGACTGTTTTTCCAGACCAAAGAACTGCCCCTTGGCAGTATCCCCAGATTGGTAGC
TGGGACCAGGCGAGTCCTGTCCTCAGGCACCGTGCCAAAGACCTCCCTTGCCCCACCTCC
AGGGGCCCTGCAGGCTGCTGTGGTGGGGAGGTGGGCCCTGCTGCTCTTGCTCAGCCTGCT
GGGCCCTCTGGGTATGAGGATGCTTAACAGTTCCAGCCTCACACTGTGCCTTATGCATTA
AAATATCTGTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18073358|emb|CAC81760.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18073358|emb|CAC81760.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-199, - strand, RNAz p=0.999071
               

               
               1185-1329, + strand, RNAz p=0.981417

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-199, - strand, RNAz p=0.999071
               

               
               1185-1329, + strand, RNAz p=0.981417

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of CR622817, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of CR622817, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-328, gnl|bosTau2|chr19 (13684658-13684331)
               

               
               1-328, gnl|Hg17|chr17 (24068685-24068358)
               

               
               1-328, gnl|Mm7|chr11 (78270638-78270965)
               


               
               485-591, gnl|bosTau2|chr19 (13682823-13682717)
               

               
               485-591, gnl|Hg17|chr17 (24067048-24066942)
               

               
               485-591, gnl|Mm7|chr11 (78271862-78271968)
               


               
               865-988, gnl|bosTau2|chr19 (13681950-13681828)
               

               
               865-988, gnl|Hg17|chr17 (24066058-24065936)
               

               
               865-988, gnl|Mm7|chr11 (78273137-78273259)
               


               
               990-1392, gnl|bosTau2|chr19 (13681745-13681345)
               

               
               990-1392, gnl|Hg17|chr17 (24065852-24065435)
               

               
               990-1392, gnl|Mm7|chr11 (78273352-78273757)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-328, gnl|bosTau2|chr19 (13684658-13684331)
               

               
               1-328, gnl|Hg17|chr17 (24068685-24068358)
               

               
               1-328, gnl|Mm7|chr11 (78270638-78270965)
               


               
               485-591, gnl|bosTau2|chr19 (13682823-13682717)
               

               
               485-591, gnl|Hg17|chr17 (24067048-24066942)
               

               
               485-591, gnl|Mm7|chr11 (78271862-78271968)
               


               
               865-988, gnl|bosTau2|chr19 (13681950-13681828)
               

               
               865-988, gnl|Hg17|chr17 (24066058-24065936)
               

               
               865-988, gnl|Mm7|chr11 (78273137-78273259)
               


               
               990-1392, gnl|bosTau2|chr19 (13681745-13681345)
               

               
               990-1392, gnl|Hg17|chr17 (24065852-24065435)
               

               
               990-1392, gnl|Mm7|chr11 (78273352-78273757)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cov (0.264306)
               

               
               cli (0.152812)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.264306)
               

               
               cli (0.152812)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)

	40-199, - strand, RNAz p=0.999071
	1185-1329, + strand, RNAz p=0.981417

	1-328, gnl\|bosTau2\|chr19 (13684658-13684331)
	1-328, gnl\|Hg17\|chr17 (24068685-24068358)
	1-328, gnl\|Mm7\|chr11 (78270638-78270965)

	485-591, gnl\|bosTau2\|chr19 (13682823-13682717)
	485-591, gnl\|Hg17\|chr17 (24067048-24066942)
	485-591, gnl\|Mm7\|chr11 (78271862-78271968)

	865-988, gnl\|bosTau2\|chr19 (13681950-13681828)
	865-988, gnl\|Hg17\|chr17 (24066058-24065936)
	865-988, gnl\|Mm7\|chr11 (78273137-78273259)

	990-1392, gnl\|bosTau2\|chr19 (13681745-13681345)
	990-1392, gnl\|Hg17\|chr17 (24065852-24065435)
	990-1392, gnl\|Mm7\|chr11 (78273352-78273757)

	cov (0.264306)
	cli (0.152812)
	ute (0.132784)
	ese (0.126502)
	nbm (0.0993246)