Non-Coding RNA Search

Ss1.1-Ova1-OVR010004G08.5

Sequence:


               
               GTTACGTGAGGGTGGGCGGCGGAGCTGGAGGCTTAACTTTGTTGCTCTCTTCATCTCTAT
GGTTTTCAGAGGTGCGCGGCTTTGACGGAGAAGCAGCTGAAGCTCGGCTGTAGACGGGAT
GTTTCGTCTTAACTCACTTTCTGCATTGGCAGAACTGGCAGTAGTGGGCTCTCGCTGGTA
CCATGGAGGATCACAGCCTACCCAGATGAGGCGGCGGCTAATGGTGGTGGCTTTTCTTGG
TGCATCTGCAGTAACTGCAAGTACTGGTCTCTTGTGGAAGAGGGCCCTTGCAGAATCTCC
ACCATCTGTAAACAACCTGAAGAGTGAACTTGGTGACAAAGGGAAGAGTAAGGATGAAGG
GGAAGATTGTAATGATGAAAAAAAGGCTGCAGGTACTTGTCTTGAGCCATATCCAGAAGA
GAAAAAGAAGAAACGCTCTGGATTCAGAGACCGAAAAGTGATGGAATATGAGAATAGGAT
TCGCGCATATTCTACACCAGACAAAATCTTCCGGTATTTTGCCACCTTAAAAGTAATCAG
TGAACATGGTGAATCTGAAGTTTTTATGACACCACAAGACTTTGTGCGATCCATAACACC
TAATGAAAAACAACCAGAACACTTGGGTCTGGATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTACGTGAGGGTGGGCGGCGGAGCTGGAGGCTTAACTTTGTTGCTCTCTTCATCTCTAT
GGTTTTCAGAGGTGCGCGGCTTTGACGGAGAAGCAGCTGAAGCTCGGCTGTAGACGGGAT
GTTTCGTCTTAACTCACTTTCTGCATTGGCAGAACTGGCAGTAGTGGGCTCTCGCTGGTA
CCATGGAGGATCACAGCCTACCCAGATGAGGCGGCGGCTAATGGTGGTGGCTTTTCTTGG
TGCATCTGCAGTAACTGCAAGTACTGGTCTCTTGTGGAAGAGGGCCCTTGCAGAATCTCC
ACCATCTGTAAACAACCTGAAGAGTGAACTTGGTGACAAAGGGAAGAGTAAGGATGAAGG
GGAAGATTGTAATGATGAAAAAAAGGCTGCAGGTACTTGTCTTGAGCCATATCCAGAAGA
GAAAAAGAAGAAACGCTCTGGATTCAGAGACCGAAAAGTGATGGAATATGAGAATAGGAT
TCGCGCATATTCTACACCAGACAAAATCTTCCGGTATTTTGCCACCTTAAAAGTAATCAG
TGAACATGGTGAATCTGAAGTTTTTATGACACCACAAGACTTTGTGCGATCCATAACACC
TAATGAAAAACAACCAGAACACTTGGGTCTGGATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61876975|ref|XP_584595.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61876975|ref|XP_584595.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-118, gnl|bosTau2|chr28 (22175741-22175625)
               

               
               1-118, gnl|Hg17|chr10 (74055886-74055773)
               

               
               1-118, gnl|Mm7|chr10 (59220768-59220883)
               


               
               281-466, gnl|bosTau2|chr28 (22138671-22138487)
               

               
               281-466, gnl|Hg17|chr10 (73992829-73992651)
               

               
               281-466, gnl|Mm7|chr10 (59251176-59251360)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-118, gnl|bosTau2|chr28 (22175741-22175625)
               

               
               1-118, gnl|Hg17|chr10 (74055886-74055773)
               

               
               1-118, gnl|Mm7|chr10 (59220768-59220883)
               


               
               281-466, gnl|bosTau2|chr28 (22138671-22138487)
               

               
               281-466, gnl|Hg17|chr10 (73992829-73992651)
               

               
               281-466, gnl|Mm7|chr10 (59251176-59251360)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pla (0.133672)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)

	1-118, gnl\|bosTau2\|chr28 (22175741-22175625)
	1-118, gnl\|Hg17\|chr10 (74055886-74055773)
	1-118, gnl\|Mm7\|chr10 (59220768-59220883)

	281-466, gnl\|bosTau2\|chr28 (22138671-22138487)
	281-466, gnl\|Hg17\|chr10 (73992829-73992651)
	281-466, gnl\|Mm7\|chr10 (59251176-59251360)