Ss1.1-Ova1-OVR010004H08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCGCTTCCTGGGGCCGCGCGTCCAGGGAGCTGCGCTGTCCGCCTGTCCGTCTCCCGCA GGCACTACCGGAGCCAGCCGAGCCGCCGGAGCCGCGGGCCTCCGGGCCGTCACGGGCCCA ACCCCAGGATGCTCCCCTTCGCCTCCTGCCTCCCCGGGTCTCTACTGCTCTGGACGCTGC TGCTGTTGCTCTTGGGGGCAGCGTCTCCCCAGGATTCGGAGGAGCCCGACAGCTACACGG AATGCACAGATGGCTATGAGTGGGACCCTGACAGCCAGCACTGCCGGGATGTCAATGAAT GCCTGACCATCCCCGAGGCCTGCAAGGGAGAAATGAAATGTATCAACCACTACGGGGGCT ACTTGTGCCTGCCCCGCTCGGCGGCTGTCATCAATGACCTGCATGGCGAGGGACCACCAC CACCAGTGTCCCCTGCTGAACACGCCACCCCCTGCCTACCAGGCTATGAACCGGATGAGC AAGAGAACTGCGTGGACGTGGACGAGTGTGCCCAAGCCCTGCACGACTGCCGCCCGAGCC AGGACTGCCACAACCTGCCTGGCTCCTACCAATGCACCTGCCCCGACGGCTACCGCAAGA TAGGACCCGAATGTGTGGATATAGACGAATGCCGGTACCGCTACTGCCAGCACCGCTGCG TGAACCTGCCGGGCTCCTTTCGCTGCCAGTGTGAACCAGGCTTCCAGCTGGGGCCCAACA ACCGCTCCTGTGTGGATGTGAACGAATGTGACATGGGGGCTCCGTGTGAGCAGCGATGCT TCAACTCCTATGGGACCTTCCTGTGTCGCTGCCACCAGGGCTATGAGCTGCACCGGGATG GCTTCTCCTGCAGTGATATCGATGAGTGCAGTTACTCCAGTTACCTCTGCCAGTACCGCT GTGTCAATGAGCCAGGCCGCTTCTCCTGCCACTGCCCACAGGGCTACCAGCTGCTGGCCA CACGCCTGTGCCAAGACATTGATGAATGTGAGTCGGGTGCGCACCAGTGCTCGGAGGCCC AAACTTGTGTCAACTTCCATGGGGGCTACCGCTGCGTGGACACCAACCGCTGTGTGGAGC CCTACGTCCAGGTGTCTGACAATCGCTGCCTCTGTCCGGCCTCCAACCCCCTGTGCCGGG AGCAGCCCTCGTCCATAGTGCACCGCTACATGAGCATCACCTCGGAGCGGAGCGTACCCG CTGACGTGTTCCAGATCCAAGCGACCTCGGTCTACCCCGGCGCCTACAATGCTTTTCAGA TCCGTGCTGGAAACTCACAGGGAGACTTCTACATCAGGCAAATCAACAACGTCAGCGCCA TGCTGGTCCTCGCCCGGCCTGTGACGGGCCCCCGGGAATACGTGCTGGACCTCGAGATGG TCACCATGAACTCCCTCATGAGCTACCGGGCCAGCTCCGTGCTGAGACTCACCGTCTTCG TGGGGGCCTACGCCTTCTGAGGAGCGGGGGGCAGCCCTCGGGGAGGGGGAGGTTCCCTGC CGCCGAGGAGCCTGGGGCTCAGGGATGACTGTGTTCTGCTAAAAGGGAAGATGCTGTTTC GAGGGGCAGAGACAGAGGCAATAAAGGGACAAAGAAGGAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCGCTTCCTGGGGCCGCGCGTCCAGGGAGCTGCGCTGTCCGCCTGTCCGTCTCCCGCA GGCACTACCGGAGCCAGCCGAGCCGCCGGAGCCGCGGGCCTCCGGGCCGTCACGGGCCCA ACCCCAGGATGCTCCCCTTCGCCTCCTGCCTCCCCGGGTCTCTACTGCTCTGGACGCTGC TGCTGTTGCTCTTGGGGGCAGCGTCTCCCCAGGATTCGGAGGAGCCCGACAGCTACACGG AATGCACAGATGGCTATGAGTGGGACCCTGACAGCCAGCACTGCCGGGATGTCAATGAAT GCCTGACCATCCCCGAGGCCTGCAAGGGAGAAATGAAATGTATCAACCACTACGGGGGCT ACTTGTGCCTGCCCCGCTCGGCGGCTGTCATCAATGACCTGCATGGCGAGGGACCACCAC CACCAGTGTCCCCTGCTGAACACGCCACCCCCTGCCTACCAGGCTATGAACCGGATGAGC AAGAGAACTGCGTGGACGTGGACGAGTGTGCCCAAGCCCTGCACGACTGCCGCCCGAGCC AGGACTGCCACAACCTGCCTGGCTCCTACCAATGCACCTGCCCCGACGGCTACCGCAAGA TAGGACCCGAATGTGTGGATATAGACGAATGCCGGTACCGCTACTGCCAGCACCGCTGCG TGAACCTGCCGGGCTCCTTTCGCTGCCAGTGTGAACCAGGCTTCCAGCTGGGGCCCAACA ACCGCTCCTGTGTGGATGTGAACGAATGTGACATGGGGGCTCCGTGTGAGCAGCGATGCT TCAACTCCTATGGGACCTTCCTGTGTCGCTGCCACCAGGGCTATGAGCTGCACCGGGATG GCTTCTCCTGCAGTGATATCGATGAGTGCAGTTACTCCAGTTACCTCTGCCAGTACCGCT GTGTCAATGAGCCAGGCCGCTTCTCCTGCCACTGCCCACAGGGCTACCAGCTGCTGGCCA CACGCCTGTGCCAAGACATTGATGAATGTGAGTCGGGTGCGCACCAGTGCTCGGAGGCCC AAACTTGTGTCAACTTCCATGGGGGCTACCGCTGCGTGGACACCAACCGCTGTGTGGAGC CCTACGTCCAGGTGTCTGACAATCGCTGCCTCTGTCCGGCCTCCAACCCCCTGTGCCGGG AGCAGCCCTCGTCCATAGTGCACCGCTACATGAGCATCACCTCGGAGCGGAGCGTACCCG CTGACGTGTTCCAGATCCAAGCGACCTCGGTCTACCCCGGCGCCTACAATGCTTTTCAGA TCCGTGCTGGAAACTCACAGGGAGACTTCTACATCAGGCAAATCAACAACGTCAGCGCCA TGCTGGTCCTCGCCCGGCCTGTGACGGGCCCCCGGGAATACGTGCTGGACCTCGAGATGG TCACCATGAACTCCCTCATGAGCTACCGGGCCAGCTCCGTGCTGAGACTCACCGTCTTCG TGGGGGCCTACGCCTTCTGAGGAGCGGGGGGCAGCCCTCGGGGAGGGGGAGGTTCCCTGC CGCCGAGGAGCCTGGGGCTCAGGGATGACTGTGTTCTGCTAAAAGGGAAGATGCTGTTTC GAGGGGCAGAGACAGAGGCAATAAAGGGACAAAGAAGGAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1337-1456, - strand, RNAz p=0.837494 | |
| 1487-1599, - strand, RNAz p=0.985781 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1337-1456, - strand, RNAz p=0.837494 | |
| 1487-1599, - strand, RNAz p=0.985781 |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 117-249, gnl|bosTau2|chr29 (30490973-30490841) | |
| 117-249, gnl|Hg17|chr11 (65396413-65396281) | |
| 117-249, gnl|Mm7|chr19 (5369862-5369994) | |
| 288-495, gnl|bosTau2|chr29 (30489929-30489722) | |
| 288-495, gnl|Hg17|chr11 (65395411-65395204) | |
| 288-495, gnl|Mm7|chr19 (5370871-5371078) | |
| 735-855, gnl|bosTau2|chr29 (30488463-30488343) | |
| 735-855, gnl|canFam2|chr18 (54418382-54418249) | |
| 735-855, gnl|danRer3|chrUn (51623842-51623715) | |
| 735-855, gnl|dasNov1|scaffold_172037 (3475-3608) | |
| 735-855, gnl|echTel1|scaffold_296402 (3589-3722) | |
| 735-855, gnl|fr1|chrUn (186384879-186384746) | |
| 735-855, gnl|hg17|chr11 (65393894-65394027) | |
| 735-855, gnl|Hg17|chr11 (65394024-65393904) | |
| 735-855, gnl|loxAfr1|scaffold_60382 (34221-34088) | |
| 735-855, gnl|mm7|chr19 (5373136-5373005) | |
| 735-855, gnl|Mm7|chr19 (5373006-5373126) | |
| 735-855, gnl|monDom2|scaffold_107 (3012275-3012141) | |
| 735-855, gnl|oryCun1|scaffold_187642 (34311-34445) | |
| 735-855, gnl|panTro1|chr9 (66640373-66640506) | |
| 735-855, gnl|rheMac2|chr14 (8584739-8584606) | |
| 735-855, gnl|rn3|chr1 (208275500-208275368) | |
| 735-855, gnl|tetNig1|chr17 (5674391-5674264) | |
| 735-855, gnl|xenTro1|scaffold_521 (662692-662825) | |
| 974-1102, gnl|bosTau2|chr29 (30486252-30486124) | |
| 974-1102, gnl|canFam2|chr18 (54419975-54419829) | |
| 974-1102, gnl|danRer3|chrUn (51624255-51624120) | |
| 974-1102, gnl|dasNov1|scaffold_49898 (6353-6215) | |
| 974-1102, gnl|echTel1|scaffold_296402 (1391-1529) | |
| 974-1102, gnl|fr1|chrUn (186385380-186385245) | |
| 974-1102, gnl|hg17|chr11 (65392326-65392472) | |
| 974-1102, gnl|Hg17|chr11 (65392470-65392342) | |
| 974-1102, gnl|loxAfr1|scaffold_27222 (34197-34061) | |
| 974-1102, gnl|mm7|chr19 (5375184-5375038) | |
| 974-1102, gnl|Mm7|chr19 (5375038-5375166) | |
| 974-1102, gnl|monDom2|scaffold_107 (3013299-3013163) | |
| 974-1102, gnl|oryCun1|scaffold_84679 (5124-5267) | |
| 974-1102, gnl|panTro1|chr9 (66638796-66638942) | |
| 974-1102, gnl|rheMac2|chr14 (8586302-8586156) | |
| 974-1102, gnl|rn3|chr1 (208277512-208277366) | |
| 974-1102, gnl|tetNig1|chr17 (5675264-5675118) | |
| 974-1102, gnl|xenTro1|scaffold_521 (659035-659170) | |
| 1298-1599, gnl|bosTau2|chr29 (30484831-30484524) | |
| 1298-1599, gnl|Hg17|chr11 (65391127-65390872) | |
| 1298-1599, gnl|Mm7|chr19 (5376366-5376659) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 117-249, gnl|bosTau2|chr29 (30490973-30490841) | |
| 117-249, gnl|Hg17|chr11 (65396413-65396281) | |
| 117-249, gnl|Mm7|chr19 (5369862-5369994) | |
| 288-495, gnl|bosTau2|chr29 (30489929-30489722) | |
| 288-495, gnl|Hg17|chr11 (65395411-65395204) | |
| 288-495, gnl|Mm7|chr19 (5370871-5371078) | |
| 735-855, gnl|bosTau2|chr29 (30488463-30488343) | |
| 735-855, gnl|canFam2|chr18 (54418382-54418249) | |
| 735-855, gnl|danRer3|chrUn (51623842-51623715) | |
| 735-855, gnl|dasNov1|scaffold_172037 (3475-3608) | |
| 735-855, gnl|echTel1|scaffold_296402 (3589-3722) | |
| 735-855, gnl|fr1|chrUn (186384879-186384746) | |
| 735-855, gnl|hg17|chr11 (65393894-65394027) | |
| 735-855, gnl|Hg17|chr11 (65394024-65393904) | |
| 735-855, gnl|loxAfr1|scaffold_60382 (34221-34088) | |
| 735-855, gnl|mm7|chr19 (5373136-5373005) | |
| 735-855, gnl|Mm7|chr19 (5373006-5373126) | |
| 735-855, gnl|monDom2|scaffold_107 (3012275-3012141) | |
| 735-855, gnl|oryCun1|scaffold_187642 (34311-34445) | |
| 735-855, gnl|panTro1|chr9 (66640373-66640506) | |
| 735-855, gnl|rheMac2|chr14 (8584739-8584606) | |
| 735-855, gnl|rn3|chr1 (208275500-208275368) | |
| 735-855, gnl|tetNig1|chr17 (5674391-5674264) | |
| 735-855, gnl|xenTro1|scaffold_521 (662692-662825) | |
| 974-1102, gnl|bosTau2|chr29 (30486252-30486124) | |
| 974-1102, gnl|canFam2|chr18 (54419975-54419829) | |
| 974-1102, gnl|danRer3|chrUn (51624255-51624120) | |
| 974-1102, gnl|dasNov1|scaffold_49898 (6353-6215) | |
| 974-1102, gnl|echTel1|scaffold_296402 (1391-1529) | |
| 974-1102, gnl|fr1|chrUn (186385380-186385245) | |
| 974-1102, gnl|hg17|chr11 (65392326-65392472) | |
| 974-1102, gnl|Hg17|chr11 (65392470-65392342) | |
| 974-1102, gnl|loxAfr1|scaffold_27222 (34197-34061) | |
| 974-1102, gnl|mm7|chr19 (5375184-5375038) | |
| 974-1102, gnl|Mm7|chr19 (5375038-5375166) | |
| 974-1102, gnl|monDom2|scaffold_107 (3013299-3013163) | |
| 974-1102, gnl|oryCun1|scaffold_84679 (5124-5267) | |
| 974-1102, gnl|panTro1|chr9 (66638796-66638942) | |
| 974-1102, gnl|rheMac2|chr14 (8586302-8586156) | |
| 974-1102, gnl|rn3|chr1 (208277512-208277366) | |
| 974-1102, gnl|tetNig1|chr17 (5675264-5675118) | |
| 974-1102, gnl|xenTro1|scaffold_521 (659035-659170) | |
| 1298-1599, gnl|bosTau2|chr29 (30484831-30484524) | |
| 1298-1599, gnl|Hg17|chr11 (65391127-65390872) | |
| 1298-1599, gnl|Mm7|chr19 (5376366-5376659) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| amn (0.417711) | |
| nca (0.410621) | |
| cov (0.396458) | |
| elu (0.385356) | |
| eep (0.367692) | |
| fhi (0.339155) | |
| pla (0.267344) | |
| ese (0.253004) | |
| ece (0.229305) | |
| nep (0.183925) | |
| fty (0.17584) | |
| cag (0.151194) | |
| lun (0.150489) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| nca (0.410621) | |
| cov (0.396458) | |
| elu (0.385356) | |
| eep (0.367692) | |
| fhi (0.339155) | |
| pla (0.267344) | |
| ese (0.253004) | |
| ece (0.229305) | |
| nep (0.183925) | |
| fty (0.17584) | |
| cag (0.151194) | |
| lun (0.150489) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| cty (0.10408) | |
| nbm (0.0993246) |