Non-Coding RNA Search

Ss1.1-Ova1-OVR010004H09.5

Sequence:


               
               CCCCGAGCCATGGCGAGCAGGCAGGAGTCGCAGCCACAGTGCTGGCCCCCAGCCCGCAGC
GTCGCGACCTCCTTCGACTACCTGGTGATCGGGGGCGGCTCCGGCGGGCTGGCCAGCGCG
CGCCGGGCGGCGGAGCTGGGCGCTCGGGCCGCGGTGGTGGAGAGCCACAAGCTGGGCGGC
ACTTGCGTGAATGTCGGATGTGTACCCAAAAAGGTGATGTGGAACACAGCTGTCCACTCT
GAGTTTATGCATGATCATGTTGACTATGGCTTTCAGAGTTGTGAGAGTAAATTCAATTGG
CGGGTTATAAAGGAAAAGCGCGATGCCTACGTGAGCCGACTGAACACCATCTATCAAAAT
AATCTGACCAAGTCCCACATAGAAATCATCCACGGCCATGCAGCATTCACGAGCGACCCC
CAGCCTACAGTAGAGGTCAACGGGAAGAAGTACACAGCTCCTCACATCCTGATTGCCACA
GGCGGCGTACCCTCGGTCCCCCCGGAGAGCCAGATCCCTGGTGCCAGCCTAGGAATTACC
AGTGATGGGTTTTTTCAGCTGGAAGAATTGCCCAGCCGCAGTGTCATTGTTGGGGCCGGT
TACATTGCTGTGGAGATAGCTGGAATCCTTTCTGCCCTGGGCTCTAAGACGTCACTGATG
ATACGACATGATAAGGTGCTTAGGAGTTTTGATTCAATCATCAGCTCCAACTGTACTGAA
GAGCTGGAGAATGCTGGCATAGAGGTGCTGAAGTACTCACAGGTCAAGGAAGTCAAAAAA
ACTTCTTCCGGCCTGGAACTCTGCATGGTTACTTCAGTTCCTGGTAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCGAGCCATGGCGAGCAGGCAGGAGTCGCAGCCACAGTGCTGGCCCCCAGCCCGCAGC
GTCGCGACCTCCTTCGACTACCTGGTGATCGGGGGCGGCTCCGGCGGGCTGGCCAGCGCG
CGCCGGGCGGCGGAGCTGGGCGCTCGGGCCGCGGTGGTGGAGAGCCACAAGCTGGGCGGC
ACTTGCGTGAATGTCGGATGTGTACCCAAAAAGGTGATGTGGAACACAGCTGTCCACTCT
GAGTTTATGCATGATCATGTTGACTATGGCTTTCAGAGTTGTGAGAGTAAATTCAATTGG
CGGGTTATAAAGGAAAAGCGCGATGCCTACGTGAGCCGACTGAACACCATCTATCAAAAT
AATCTGACCAAGTCCCACATAGAAATCATCCACGGCCATGCAGCATTCACGAGCGACCCC
CAGCCTACAGTAGAGGTCAACGGGAAGAAGTACACAGCTCCTCACATCCTGATTGCCACA
GGCGGCGTACCCTCGGTCCCCCCGGAGAGCCAGATCCCTGGTGCCAGCCTAGGAATTACC
AGTGATGGGTTTTTTCAGCTGGAAGAATTGCCCAGCCGCAGTGTCATTGTTGGGGCCGGT
TACATTGCTGTGGAGATAGCTGGAATCCTTTCTGCCCTGGGCTCTAAGACGTCACTGATG
ATACGACATGATAAGGTGCTTAGGAGTTTTGATTCAATCATCAGCTCCAACTGTACTGAA
GAGCTGGAGAATGCTGGCATAGAGGTGCTGAAGTACTCACAGGTCAAGGAAGTCAAAAAA
ACTTCTTCCGGCCTGGAACTCTGCATGGTTACTTCAGTTCCTGGTAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38098644|gb|AAR10973.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38098644|gb|AAR10973.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               681-828, - strand, RNAz p=0.958676

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               681-828, - strand, RNAz p=0.958676

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               3-828, gnl|bosTau2|chr27 (16593675-16594501)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-828, gnl|bosTau2|chr27 (16593675-16594501)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cki (0.165235)
               

               
               nmm (0.132802)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               nmm (0.132802)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	cki (0.165235)
	nmm (0.132802)
	cbl (0.114797)
	cty (0.10408)
	ldo (0.0970026)