Ss1.1-Ova1-OVR010005F12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGGCGCTTTACGGTGCCCAAGCACTGCTGAGCTGGGAGATGACGACTGCAGTCCGGGC TGAGCCCTTGGGTCCTCCTAACAGCTTTGCGAAGCGGGTCCTGGTGACCGGGGGTGCTGG TTTCATTGCATCACATGTGATTGTCTCTCTAGTAGAAGATTATCCAAACTATATGATCGT AAATCTAGACAAGCTGGATTACTGTGCAAGCCTGAAGAACCTTGAAACCATTTCTGATAA ACAAAATTACAAATTTATACAGGGTGACATATGTGATTCTCACTTTGTGAAACTACTTTT TGAAACAGAAAAAATAGACATAGTGCTACATTTTGCTGCACAAACACATGTAGATCTTTC ATTTGTCCGTGCCTTTGAATTTACCTATGTTAATGTTTACGGCACTCACGTTTTGCTAAG TGCTGCACATGAAGCCAGAGTGGAGAAATTTATTTATGTCAGCACAGATGAGGTGTATGG AGGCAGCCTTGATAAGGAATTTGATGAATCTTCACCCAAACAACCTACAAATCCTTATGC CTCATCTAAAGCAGCTGCTGAGTGTTTTGTACAGTCTTACTGGGAACGATATAAGTTTCC AGTTGTCATCACCCGAAGCAGTAATGTTTATGGACCCCATCAATATCCAGAAAAGGTTAT TCCAAAATTTATATCTTTACTACAACACAACAGGAAATGCTGCATTCATGGATCAGGGCT TCAAACAAGAAATTTCCTTTATGCTACCGATGTAGTGGAAGCATTTCTCACTGTCCTCAA AAAGGGAAAACCTGGTGAAATTTATAACATTGGGACCAATTTTGAAATGTCAGTTCTCCA GCTTGCCAAAGAACTAATACAACTGATCAAAGAGACCAAATCAGAGTCCGAAATGGAAAA CTGGGTAGATTATGTTAATGACAGACCTACCAATGACATGAGATATCCAATGAAGTCAGA GAAAATACATGGATTAGGATGGAGACCCAAAGTGCCTTGGAAGGAGGGAATAAAGAAAAC AATTGAGTGGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGGCGCTTTACGGTGCCCAAGCACTGCTGAGCTGGGAGATGACGACTGCAGTCCGGGC TGAGCCCTTGGGTCCTCCTAACAGCTTTGCGAAGCGGGTCCTGGTGACCGGGGGTGCTGG TTTCATTGCATCACATGTGATTGTCTCTCTAGTAGAAGATTATCCAAACTATATGATCGT AAATCTAGACAAGCTGGATTACTGTGCAAGCCTGAAGAACCTTGAAACCATTTCTGATAA ACAAAATTACAAATTTATACAGGGTGACATATGTGATTCTCACTTTGTGAAACTACTTTT TGAAACAGAAAAAATAGACATAGTGCTACATTTTGCTGCACAAACACATGTAGATCTTTC ATTTGTCCGTGCCTTTGAATTTACCTATGTTAATGTTTACGGCACTCACGTTTTGCTAAG TGCTGCACATGAAGCCAGAGTGGAGAAATTTATTTATGTCAGCACAGATGAGGTGTATGG AGGCAGCCTTGATAAGGAATTTGATGAATCTTCACCCAAACAACCTACAAATCCTTATGC CTCATCTAAAGCAGCTGCTGAGTGTTTTGTACAGTCTTACTGGGAACGATATAAGTTTCC AGTTGTCATCACCCGAAGCAGTAATGTTTATGGACCCCATCAATATCCAGAAAAGGTTAT TCCAAAATTTATATCTTTACTACAACACAACAGGAAATGCTGCATTCATGGATCAGGGCT TCAAACAAGAAATTTCCTTTATGCTACCGATGTAGTGGAAGCATTTCTCACTGTCCTCAA AAAGGGAAAACCTGGTGAAATTTATAACATTGGGACCAATTTTGAAATGTCAGTTCTCCA GCTTGCCAAAGAACTAATACAACTGATCAAAGAGACCAAATCAGAGTCCGAAATGGAAAA CTGGGTAGATTATGTTAATGACAGACCTACCAATGACATGAGATATCCAATGAAGTCAGA GAAAATACATGGATTAGGATGGAGACCCAAAGTGCCTTGGAAGGAGGGAATAAAGAAAAC AATTGAGTGGTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 739-858, - strand, RNAz p=0.737102 | |
| 748-865, - strand, RNAz p=0.993595 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 739-858, - strand, RNAz p=0.737102 | |
| 748-865, - strand, RNAz p=0.993595 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-126, gnl|bosTau2|chr12 (33829483-33829359) | |
| 1-126, gnl|Hg17|chr13 (94046430-94046306) | |
| 1-126, gnl|Mm7|chr14 (112535526-112535404) | |
| 351-497, gnl|bosTau2|chr12 (33820491-33820345) | |
| 351-497, gnl|Hg17|chr13 (94033494-94033348) | |
| 351-497, gnl|Mm7|chr14 (112524624-112524478) | |
| 699-865, gnl|bosTau2|chr12 (33816069-33815903) | |
| 699-865, gnl|canFam2|chr22 (48337337-48337475) | |
| 699-865, gnl|echTel1|scaffold_55797 (2944-2806) | |
| 699-865, gnl|galGal2|chr1 (139081768-139081630) | |
| 699-865, gnl|hg17|chr13 (94028256-94028394) | |
| 699-865, gnl|Hg17|chr13 (94028426-94028260) | |
| 699-865, gnl|loxAfr1|scaffold_32193 (6365-6227) | |
| 699-865, gnl|mm7|chr14 (112518835-112518973) | |
| 699-865, gnl|Mm7|chr14 (112519005-112518839) | |
| 699-865, gnl|monDom2|scaffold_11 (58885024-58884886) | |
| 699-865, gnl|oryCun1|scaffold_180034 (14174-14036) | |
| 699-865, gnl|panTro1|chr14 (77057362-77057500) | |
| 699-865, gnl|rheMac2|chr17 (74984236-74984374) | |
| 699-865, gnl|rn3|chr15 (102926224-102926362) | |
| 699-865, gnl|tetNig1|chr3 (6394134-6393999) | |
| 699-865, gnl|xenTro1|scaffold_486 (654542-654680) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-126, gnl|bosTau2|chr12 (33829483-33829359) | |
| 1-126, gnl|Hg17|chr13 (94046430-94046306) | |
| 1-126, gnl|Mm7|chr14 (112535526-112535404) | |
| 351-497, gnl|bosTau2|chr12 (33820491-33820345) | |
| 351-497, gnl|Hg17|chr13 (94033494-94033348) | |
| 351-497, gnl|Mm7|chr14 (112524624-112524478) | |
| 699-865, gnl|bosTau2|chr12 (33816069-33815903) | |
| 699-865, gnl|canFam2|chr22 (48337337-48337475) | |
| 699-865, gnl|echTel1|scaffold_55797 (2944-2806) | |
| 699-865, gnl|galGal2|chr1 (139081768-139081630) | |
| 699-865, gnl|hg17|chr13 (94028256-94028394) | |
| 699-865, gnl|Hg17|chr13 (94028426-94028260) | |
| 699-865, gnl|loxAfr1|scaffold_32193 (6365-6227) | |
| 699-865, gnl|mm7|chr14 (112518835-112518973) | |
| 699-865, gnl|Mm7|chr14 (112519005-112518839) | |
| 699-865, gnl|monDom2|scaffold_11 (58885024-58884886) | |
| 699-865, gnl|oryCun1|scaffold_180034 (14174-14036) | |
| 699-865, gnl|panTro1|chr14 (77057362-77057500) | |
| 699-865, gnl|rheMac2|chr17 (74984236-74984374) | |
| 699-865, gnl|rn3|chr15 (102926224-102926362) | |
| 699-865, gnl|tetNig1|chr3 (6394134-6393999) | |
| 699-865, gnl|xenTro1|scaffold_486 (654542-654680) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nep (0.183925) | |
| gul (0.177588) | |
| lun (0.150489) | |
| cbl (0.114797) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| gul (0.177588) | |
| lun (0.150489) | |
| cbl (0.114797) |