Non-Coding RNA Search

Ss1.1-Ova1-OVR010005H06.5

Sequence:


               
               AGTGCTGCCGAGGTCCTGCAGAGCCCGGGGCTGAAGGGAGAGCCTGTCCGAGGAGAGAAG
ACGGCGGCGGCGACAGCGGCGGGCAGTGGCGCATTTCCGAGACACTGAGGAACAATGTAT
GCACTGAAGAGAGAGCTCTGGTGTGTGCTCCTGCTGTGTGGGGCCATCTGCACCTCGCCC
AGCCAGGAAACCCACAGGCGACTCAGAAGAGGAGTCAGATCGTACAGAGTGACCTGCAGA
GATGAGAAAACACAGATGATATACCAGCAACACCAGTCGTGGCTGCGGCCCCTGCTCAGG
GGCAACCGGGTGGAACACTGCTGGTGCAACGATGGCCAGACCCAGTGCCACTCTGTGCCT
GTCAAAAGTTGCAGCGAACCCCGGTGCTTCAATGGGGGGACATGTCTGCAGGCTGTCTAT
TTCTCAGACTTCGTCTGCCAGTGCCCTGTGGGGTTCATCGGGAGACAGTGTGAAATAGAT
GCCAGAGCCACCTGCTACGAGGACCAGGGTATCACCTACAGGGGCACGTGGAGCACAACA
GAGAGTGGGGCCGAGTGTGTCAACTGGAACACCAGCGGCCTGGCCAGCATGCCCTACAAT
GGGCGGAGGCCTGACGCTGTCAAGCTGGGCCTGGGAAACCACAACTACTGCAGAAACCCA
GACAAAGACTCGAAGCCCTGGTGCTACATTTTCAAGGCAGAGAAGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGCTGCCGAGGTCCTGCAGAGCCCGGGGCTGAAGGGAGAGCCTGTCCGAGGAGAGAAG
ACGGCGGCGGCGACAGCGGCGGGCAGTGGCGCATTTCCGAGACACTGAGGAACAATGTAT
GCACTGAAGAGAGAGCTCTGGTGTGTGCTCCTGCTGTGTGGGGCCATCTGCACCTCGCCC
AGCCAGGAAACCCACAGGCGACTCAGAAGAGGAGTCAGATCGTACAGAGTGACCTGCAGA
GATGAGAAAACACAGATGATATACCAGCAACACCAGTCGTGGCTGCGGCCCCTGCTCAGG
GGCAACCGGGTGGAACACTGCTGGTGCAACGATGGCCAGACCCAGTGCCACTCTGTGCCT
GTCAAAAGTTGCAGCGAACCCCGGTGCTTCAATGGGGGGACATGTCTGCAGGCTGTCTAT
TTCTCAGACTTCGTCTGCCAGTGCCCTGTGGGGTTCATCGGGAGACAGTGTGAAATAGAT
GCCAGAGCCACCTGCTACGAGGACCAGGGTATCACCTACAGGGGCACGTGGAGCACAACA
GAGAGTGGGGCCGAGTGTGTCAACTGGAACACCAGCGGCCTGGCCAGCATGCCCTACAAT
GGGCGGAGGCCTGACGCTGTCAAGCTGGGCCTGGGAAACCACAACTACTGCAGAAACCCA
GACAAAGACTCGAAGCCCTGGTGCTACATTTTCAAGGCAGAGAAGTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5HYM8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5HYM8_HUMAN

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               228-369, gnl|bosTau2|chr27 (23537170-23537029)
               

               
               228-369, gnl|canFam2|chr16 (26441669-26441509)
               

               
               228-369, gnl|echTel1|scaffold_275060 (1142-1300)
               

               
               228-369, gnl|fr1|chrUn (1457668-1457505)
               

               
               228-369, gnl|galGal2|chrUn (895244-895402)
               

               
               228-369, gnl|hg17|chr8 (42165591-42165762)
               

               
               228-369, gnl|Hg17|chr8 (42165748-42165607)
               

               
               228-369, gnl|loxAfr1|scaffold_13553 (25310-25147)
               

               
               228-369, gnl|mm7|chr8 (21557157-21556997)
               

               
               228-369, gnl|Mm7|chr8 (21557009-21557150)
               

               
               228-369, gnl|monDom2|scaffold_1 (79859577-79859408)
               

               
               228-369, gnl|panTro1|chr7 (43584410-43584582)
               

               
               228-369, gnl|rn3|chr16 (73724791-73724953)
               


               
               477-653, gnl|bosTau2|chr27 (23536415-23536239)
               

               
               477-653, gnl|Hg17|chr8 (42164249-42164073)
               

               
               477-653, gnl|Mm7|chr8 (21557951-21558127)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               228-369, gnl|bosTau2|chr27 (23537170-23537029)
               

               
               228-369, gnl|canFam2|chr16 (26441669-26441509)
               

               
               228-369, gnl|echTel1|scaffold_275060 (1142-1300)
               

               
               228-369, gnl|fr1|chrUn (1457668-1457505)
               

               
               228-369, gnl|galGal2|chrUn (895244-895402)
               

               
               228-369, gnl|hg17|chr8 (42165591-42165762)
               

               
               228-369, gnl|Hg17|chr8 (42165748-42165607)
               

               
               228-369, gnl|loxAfr1|scaffold_13553 (25310-25147)
               

               
               228-369, gnl|mm7|chr8 (21557157-21556997)
               

               
               228-369, gnl|Mm7|chr8 (21557009-21557150)
               

               
               228-369, gnl|monDom2|scaffold_1 (79859577-79859408)
               

               
               228-369, gnl|panTro1|chr7 (43584410-43584582)
               

               
               228-369, gnl|rn3|chr16 (73724791-73724953)
               


               
               477-653, gnl|bosTau2|chr27 (23536415-23536239)
               

               
               477-653, gnl|Hg17|chr8 (42164249-42164073)
               

               
               477-653, gnl|Mm7|chr8 (21557951-21558127)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.20816)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)

	228-369, gnl\|bosTau2\|chr27 (23537170-23537029)
	228-369, gnl\|canFam2\|chr16 (26441669-26441509)
	228-369, gnl\|echTel1\|scaffold_275060 (1142-1300)
	228-369, gnl\|fr1\|chrUn (1457668-1457505)
	228-369, gnl\|galGal2\|chrUn (895244-895402)
	228-369, gnl\|hg17\|chr8 (42165591-42165762)
	228-369, gnl\|Hg17\|chr8 (42165748-42165607)
	228-369, gnl\|loxAfr1\|scaffold_13553 (25310-25147)
	228-369, gnl\|mm7\|chr8 (21557157-21556997)
	228-369, gnl\|Mm7\|chr8 (21557009-21557150)
	228-369, gnl\|monDom2\|scaffold_1 (79859577-79859408)
	228-369, gnl\|panTro1\|chr7 (43584410-43584582)
	228-369, gnl\|rn3\|chr16 (73724791-73724953)

	477-653, gnl\|bosTau2\|chr27 (23536415-23536239)
	477-653, gnl\|Hg17\|chr8 (42164249-42164073)
	477-653, gnl\|Mm7\|chr8 (21557951-21558127)