Non-Coding RNA Search

Ss1.1-Ova1-OVR010006G02.5

Sequence:


               
               AATCGGTCCGGAAGGGTGAGTCGGGCTGACTGTCTCTTCCTCCTTTTTCCCAGGCAGGCG
CTGCGATTCCTCGGGGTGGGGCGATCCGCTCGCAGCGCAGGCAGGCGTGGAGACGACCCG
GTCTATGCAGAACTGAGCCCAGCTGGGACTTCAATCAACCTGGGGCAACCTGGATTCCTC
TGGAGGGTTCCAGAAGCACACATGTGGCCATGCACTGCTGCTCCTCCTCCTCCTCCTGGC
CGGTGGGGCTGAAGCCTTTCGCATTTGCGCCTTCAATGCCCAGCGGCTGACACTTGCCAA
GGTGGCCAGGGAATATGTGATGGACACCTTAGTTCGGATCCTGGCTCGCTGTGACATCAC
GGTGCTGCAGGAGGTGGTAGACTCTACTGGCAGCGCCATCCCCCTCCTGCTGCGAGAACT
CAATCGATTTGATGGCTCTGGGCCCTACAGCTCCCTGAGCAGCCCGCTGCTGGGGCGTGG
TGCGTACAAGGAGAAGTATGCGTACATCTACCGGTCACACAGGACACAGGTCCTGAATTT
CTACTTGTACCCTGACGAGGATGACCTCTTTGCCCGGGAGCCCTTTGTGGGCCAGTTCTC
TTTGCCCAGCAAGGTCCTTCCCAGCCTGGTGCTGGTCCCGCTGCACACCACTCCGAAAGC
CGTGGAGCCGGAGCTGAAGGCCCTATACGAAGTGTTTCTGGATGTCTCCCAGCGCTGGCA
GAGCGAGGATGTGATCCTGCTTGGGGACTTCAATGCTGACTGCGCTTCACTGACCAAGAA
GCGCCTGGATGAGCTAGTCCTTCGGACTCAGGCTGGCTTCCACTGGGCCGTGGCCGACGG
GGTGGACACCACGGTTCGGGCCAGCACCCACTGTACCTACGACCGAATAGTGCTGCACGG
GGAGCGCCTCCAGAGTCTGCTGCGCAACGCAGGCGCCTTCGACTTTCCCCAAAGTTTCGG
ACTCACCGAGGAGGAGGCCCTCAACATCAGCGACCACTACCCCGTGGAGGTGGAGCTGAG
CCGAGCCGTGCACAGGATCCAGCCCCTCAGCCTGGCCACTCTGTTGCTCTCGTTGCTGCT
ACTACTCCTGTCCCCACAGCTGGGCCTGGCGGCCTGAAGCCGTCCTGTACCTGCCGCCCA
GGTGTGAGGCCCACGCGGCACCCCGTCCTGAGCCCTGCCCCCATCAAATGCAGCCTCCTC
TCTCCCCGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCGGTCCGGAAGGGTGAGTCGGGCTGACTGTCTCTTCCTCCTTTTTCCCAGGCAGGCG
CTGCGATTCCTCGGGGTGGGGCGATCCGCTCGCAGCGCAGGCAGGCGTGGAGACGACCCG
GTCTATGCAGAACTGAGCCCAGCTGGGACTTCAATCAACCTGGGGCAACCTGGATTCCTC
TGGAGGGTTCCAGAAGCACACATGTGGCCATGCACTGCTGCTCCTCCTCCTCCTCCTGGC
CGGTGGGGCTGAAGCCTTTCGCATTTGCGCCTTCAATGCCCAGCGGCTGACACTTGCCAA
GGTGGCCAGGGAATATGTGATGGACACCTTAGTTCGGATCCTGGCTCGCTGTGACATCAC
GGTGCTGCAGGAGGTGGTAGACTCTACTGGCAGCGCCATCCCCCTCCTGCTGCGAGAACT
CAATCGATTTGATGGCTCTGGGCCCTACAGCTCCCTGAGCAGCCCGCTGCTGGGGCGTGG
TGCGTACAAGGAGAAGTATGCGTACATCTACCGGTCACACAGGACACAGGTCCTGAATTT
CTACTTGTACCCTGACGAGGATGACCTCTTTGCCCGGGAGCCCTTTGTGGGCCAGTTCTC
TTTGCCCAGCAAGGTCCTTCCCAGCCTGGTGCTGGTCCCGCTGCACACCACTCCGAAAGC
CGTGGAGCCGGAGCTGAAGGCCCTATACGAAGTGTTTCTGGATGTCTCCCAGCGCTGGCA
GAGCGAGGATGTGATCCTGCTTGGGGACTTCAATGCTGACTGCGCTTCACTGACCAAGAA
GCGCCTGGATGAGCTAGTCCTTCGGACTCAGGCTGGCTTCCACTGGGCCGTGGCCGACGG
GGTGGACACCACGGTTCGGGCCAGCACCCACTGTACCTACGACCGAATAGTGCTGCACGG
GGAGCGCCTCCAGAGTCTGCTGCGCAACGCAGGCGCCTTCGACTTTCCCCAAAGTTTCGG
ACTCACCGAGGAGGAGGCCCTCAACATCAGCGACCACTACCCCGTGGAGGTGGAGCTGAG
CCGAGCCGTGCACAGGATCCAGCCCCTCAGCCTGGCCACTCTGTTGCTCTCGTTGCTGCT
ACTACTCCTGTCCCCACAGCTGGGCCTGGCGGCCTGAAGCCGTCCTGTACCTGCCGCCCA
GGTGTGAGGCCCACGCGGCACCCCGTCCTGAGCCCTGCCCCCATCAAATGCAGCCTCCTC
TCTCCCCGAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|929628|emb|CAA62037.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|929628|emb|CAA62037.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               337-440, gnl|bosTau2|chrX (14317161-14317265)
               

               
               337-440, gnl|Hg17|chrX (153154272-153154168)
               

               
               337-440, gnl|Mm7|chrX (69663384-69663279)
               


               
               726-977, gnl|bosTau2|chrX (14318925-14319176)
               

               
               726-977, gnl|Hg17|chrX (153152380-153152129)
               

               
               726-977, gnl|Mm7|chrX (69660677-69660426)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               337-440, gnl|bosTau2|chrX (14317161-14317265)
               

               
               337-440, gnl|Hg17|chrX (153154272-153154168)
               

               
               337-440, gnl|Mm7|chrX (69663384-69663279)
               


               
               726-977, gnl|bosTau2|chrX (14318925-14319176)
               

               
               726-977, gnl|Hg17|chrX (153152380-153152129)
               

               
               726-977, gnl|Mm7|chrX (69660677-69660426)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               nms (0.427716)
               

               
               csp (0.322373)
               

               
               ctl (0.306138)
               

               
               cly (0.241284)
               

               
               cbl (0.229595)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               csp (0.322373)
               

               
               ctl (0.306138)
               

               
               cly (0.241284)
               

               
               cbl (0.229595)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)

	337-440, gnl\|bosTau2\|chrX (14317161-14317265)
	337-440, gnl\|Hg17\|chrX (153154272-153154168)
	337-440, gnl\|Mm7\|chrX (69663384-69663279)

	726-977, gnl\|bosTau2\|chrX (14318925-14319176)
	726-977, gnl\|Hg17\|chrX (153152380-153152129)
	726-977, gnl\|Mm7\|chrX (69660677-69660426)

	nms (0.427716)
	csp (0.322373)
	ctl (0.306138)
	cly (0.241284)
	cbl (0.229595)
	col (0.195008)
	ton (0.1755)
	eye (0.170503)
	nco (0.161734)
	cli (0.152812)
	cag (0.151194)
	pty (0.142714)
	che (0.136314)
	pla (0.133672)
	cov (0.132153)
	ese (0.126502)
	eru (0.120048)
	med (0.116252)