Non-Coding RNA Search

Ss1.1-Ova1-OVR010007B05.5

Sequence:


               
               CGAACTGGGAGGCTGACTTGTGGAGCATCACCCCCAGCTCCTCTCCCCCAGCCCCTCCTC
CGCCACCGGCAGTGGCCGGGGAATAGAACCGAGCAGGGGGAGGGGAAGAGCTATACCCAT
CCCCCTTCCTCCAGCCCTCCCCGCGTTCAGATTCACTTGCACCTTTTATTATTTTAACTC
TTCTCCCTAGGACACGCGGTCCCCGGAACTGTCCCTCCGGCAGTCGCGGCCCCTGCTCCC
GCGCGCCGAGATGGGACATCGAGGGACCTGCCCGCGAGGCGTGTGCGGAGAGGTGCGGCC
GCCGCGCCAGCTGTCCAGAGTCTGAGAGAAGGAGAGGCAGGTCAGAGACAGGTGTATAGG
CTGGCTATGGTGACGGGACGATGTTGGCCAGAAAGAGCATCATCCCGGAGGAGTATGTGC
TGGCGCGCATCGCGGCAGAGAACCTGCGCAAACCGCGCATCCGGGACCGCCTCCCCAAGG
CCCGCTTCATCGCCAAGAGCGGGGCCTGCAACCTGGCGCACAAGAACATCCGGGAGCAAG
GACGGTTCCTCCAGGACATCTTCACCACCTTGGTGGACCTGAAATGGCGCCACACGCTGG
TCATCTTTACCATGTCGTTCCTCTGCAGCTGGCTGCTCTTCGCCATCATGTGGTGGCTGG
TGGCCTTTGCCCATGGGGACATCTATGCTTACATGGAGAAAGGCGGGACAGAGAAGAGCG
GTTTGGAGTCCACTGTGTGTGTGACGAATGTCAGGTCTTTCACCTCTGCTTTCCTCTTCT
CTATTGAAGTTCAAGTGACAATTGGCTTTGGAGGGAGAATGATGACAGAGGAATGCCCGC
TGGCCATCACAGTCCTGATTCTCCAGAACATTGTGGGTTTGATCATCAATGCGGTCATGT
TGGGCTGCATTTTCATGAAAACAGCCCAGGCTCACAGAAGGGCAGAAACCTTGATTTTCA
GTCGCCATGCTGTCATCGCCGTCCGAAATGGCAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAACTGGGAGGCTGACTTGTGGAGCATCACCCCCAGCTCCTCTCCCCCAGCCCCTCCTC
CGCCACCGGCAGTGGCCGGGGAATAGAACCGAGCAGGGGGAGGGGAAGAGCTATACCCAT
CCCCCTTCCTCCAGCCCTCCCCGCGTTCAGATTCACTTGCACCTTTTATTATTTTAACTC
TTCTCCCTAGGACACGCGGTCCCCGGAACTGTCCCTCCGGCAGTCGCGGCCCCTGCTCCC
GCGCGCCGAGATGGGACATCGAGGGACCTGCCCGCGAGGCGTGTGCGGAGAGGTGCGGCC
GCCGCGCCAGCTGTCCAGAGTCTGAGAGAAGGAGAGGCAGGTCAGAGACAGGTGTATAGG
CTGGCTATGGTGACGGGACGATGTTGGCCAGAAAGAGCATCATCCCGGAGGAGTATGTGC
TGGCGCGCATCGCGGCAGAGAACCTGCGCAAACCGCGCATCCGGGACCGCCTCCCCAAGG
CCCGCTTCATCGCCAAGAGCGGGGCCTGCAACCTGGCGCACAAGAACATCCGGGAGCAAG
GACGGTTCCTCCAGGACATCTTCACCACCTTGGTGGACCTGAAATGGCGCCACACGCTGG
TCATCTTTACCATGTCGTTCCTCTGCAGCTGGCTGCTCTTCGCCATCATGTGGTGGCTGG
TGGCCTTTGCCCATGGGGACATCTATGCTTACATGGAGAAAGGCGGGACAGAGAAGAGCG
GTTTGGAGTCCACTGTGTGTGTGACGAATGTCAGGTCTTTCACCTCTGCTTTCCTCTTCT
CTATTGAAGTTCAAGTGACAATTGGCTTTGGAGGGAGAATGATGACAGAGGAATGCCCGC
TGGCCATCACAGTCCTGATTCTCCAGAACATTGTGGGTTTGATCATCAATGCGGTCATGT
TGGGCTGCATTTTCATGAAAACAGCCCAGGCTCACAGAAGGGCAGAAACCTTGATTTTCA
GTCGCCATGCTGTCATCGCCGTCCGAAATGGCAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               O42508_CHICK

Coded protein: 1 entry(ies)

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Protein identifier


               
               O42508_CHICK

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               835-954, + strand, RNAz p=0.694107

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               835-954, + strand, RNAz p=0.694107

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               368-680, gnl|bosTau2|chr15 (24378075-24378385)
               

               
               368-680, gnl|Hg17|chr11 (17366228-17365918)
               

               
               368-680, gnl|Mm7|chr7 (42276144-42275835)
               


               
               756-992, gnl|bosTau2|chr15 (24378434-24378670)
               

               
               756-992, gnl|Hg17|chr11 (17365869-17365633)
               

               
               756-992, gnl|Mm7|chr7 (42275786-42275550)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               368-680, gnl|bosTau2|chr15 (24378075-24378385)
               

               
               368-680, gnl|Hg17|chr11 (17366228-17365918)
               

               
               368-680, gnl|Mm7|chr7 (42276144-42275835)
               


               
               756-992, gnl|bosTau2|chr15 (24378434-24378670)
               

               
               756-992, gnl|Hg17|chr11 (17365869-17365633)
               

               
               756-992, gnl|Mm7|chr7 (42275786-42275550)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hlv (0.139256)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               pla (0.133672)

	368-680, gnl\|bosTau2\|chr15 (24378075-24378385)
	368-680, gnl\|Hg17\|chr11 (17366228-17365918)
	368-680, gnl\|Mm7\|chr7 (42276144-42275835)

	756-992, gnl\|bosTau2\|chr15 (24378434-24378670)
	756-992, gnl\|Hg17\|chr11 (17365869-17365633)
	756-992, gnl\|Mm7\|chr7 (42275786-42275550)