Ss1.1-Ova1-OVR010007D04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGGCACCCTTCTCGCACGCGGGTCCCTAAATTTGCCAGCTGCCGAGGTGAGCCCCGCC CTGCACCCCAGGGCCCATGGGGCGGCTCCGCCTTTGCTGGTCCCCCAGTCTGTGGGCCGG GCCAGATCGTGTATAAAGTAGCCGGGCGCTCCGCCGGCAGCACGAGTGACACCTCCCAGG TCGCAGCCAGAGGACCTACAGCCCCCCGCGCCTTCCCAGCTTGAGTCGGCCCGGCAACCA GCAGCCCGGCCAATCTGCGCGCCGCCGGAGCCATGGCGGTCAGAAAAGCACTGATCATAC TGGCCCACTCCGAGAAGACGTCCTTCAATTATGCCATGAAGGAGGCCGCCGTGGAGGCTT TGAAGAGGAGAGGATGGGAGGTCGCCGTGTCGGACCTGTATGCCATGAACTTCAATCCCG TCATCTCCAGAAAGGACATCACAGGTAAACTGAAGGACCCCGGGAACTTTCAGTATCCTG CCGAGACTGCTCTGGCTTATAAAGAAGGCCGTCTGAGCCCAGATATTGTGGCCGAACAAA AGAAGGTGGAAGCCGCAGACCTTGTGATTTTTCAGTTCCCACTGCAGTGGTTTGGAGTCC CTGCTATTCTGAAAGGCTGGTTTGAACGAGTGCTCATAGGGGAGTTTGCTTACACATACG CTGCCATGTATGACAAGGGACCTTTCCGGAATAAGAAAGCAGTGCTTTCCATCACCACTG GCGGCAGTGGCTCCATGTACTCTCTGCAGGGTATCCACGGGGACATGAATATCCTCCTCT GGCCAATTCAGAGTGGCACTTTGCATTTCTGTGGCTTCCAAGTCTTGGAACCTCAGCTGA CGTACAGCATTGGGCACACTCCAGAGGATGCCCGAATCCAGATCCTGGAAGAGTGGAAGA AACGCCTGGAGAATATTTGGGATGAGACGCCACTGTACTTTGCGCCAAGTAGCCTCTTTG ACCTAAACTTCCAGGCAGGATTCTTAATGAAAAAGCAGGTGCAGGATGAGCAAAAAAGTA ACAAATTTGGTCTTTCTGTGGGCCATCACTTGGGCAAATCCATCCCGACGGACAACCAGG TTAAAGCTAGAAAATAAGATTCACAAGACTTTTATTTCCTTCTAAAATGTATCGAAATTT AGGTTTCTTTTTCTGCCTTCCTTGACTTGCTTTCGTTTTTAAGATTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGGCACCCTTCTCGCACGCGGGTCCCTAAATTTGCCAGCTGCCGAGGTGAGCCCCGCC CTGCACCCCAGGGCCCATGGGGCGGCTCCGCCTTTGCTGGTCCCCCAGTCTGTGGGCCGG GCCAGATCGTGTATAAAGTAGCCGGGCGCTCCGCCGGCAGCACGAGTGACACCTCCCAGG TCGCAGCCAGAGGACCTACAGCCCCCCGCGCCTTCCCAGCTTGAGTCGGCCCGGCAACCA GCAGCCCGGCCAATCTGCGCGCCGCCGGAGCCATGGCGGTCAGAAAAGCACTGATCATAC TGGCCCACTCCGAGAAGACGTCCTTCAATTATGCCATGAAGGAGGCCGCCGTGGAGGCTT TGAAGAGGAGAGGATGGGAGGTCGCCGTGTCGGACCTGTATGCCATGAACTTCAATCCCG TCATCTCCAGAAAGGACATCACAGGTAAACTGAAGGACCCCGGGAACTTTCAGTATCCTG CCGAGACTGCTCTGGCTTATAAAGAAGGCCGTCTGAGCCCAGATATTGTGGCCGAACAAA AGAAGGTGGAAGCCGCAGACCTTGTGATTTTTCAGTTCCCACTGCAGTGGTTTGGAGTCC CTGCTATTCTGAAAGGCTGGTTTGAACGAGTGCTCATAGGGGAGTTTGCTTACACATACG CTGCCATGTATGACAAGGGACCTTTCCGGAATAAGAAAGCAGTGCTTTCCATCACCACTG GCGGCAGTGGCTCCATGTACTCTCTGCAGGGTATCCACGGGGACATGAATATCCTCCTCT GGCCAATTCAGAGTGGCACTTTGCATTTCTGTGGCTTCCAAGTCTTGGAACCTCAGCTGA CGTACAGCATTGGGCACACTCCAGAGGATGCCCGAATCCAGATCCTGGAAGAGTGGAAGA AACGCCTGGAGAATATTTGGGATGAGACGCCACTGTACTTTGCGCCAAGTAGCCTCTTTG ACCTAAACTTCCAGGCAGGATTCTTAATGAAAAAGCAGGTGCAGGATGAGCAAAAAAGTA ACAAATTTGGTCTTTCTGTGGGCCATCACTTGGGCAAATCCATCCCGACGGACAACCAGG TTAAAGCTAGAAAATAAGATTCACAAGACTTTTATTTCCTTCTAAAATGTATCGAAATTT AGGTTTCTTTTTCTGCCTTCCTTGACTTGCTTTCGTTTTTAAGATTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 868-987, + strand, RNAz p=0.536142 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 868-987, + strand, RNAz p=0.536142 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_000903, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 279-446, gnl|bosTau2|chr18 (30329660-30329493) | |
| 279-446, gnl|canFam2|chr5 (82991720-82991565) | |
| 279-446, gnl|danRer3|chr7 (46065151-46064996) | |
| 279-446, gnl|dasNov1|scaffold_11729 (46124-45969) | |
| 279-446, gnl|echTel1|scaffold_280090 (7539-7384) | |
| 279-446, gnl|fr1|chrUn (23850038-23850193) | |
| 279-446, gnl|hg17|chr16 (68309773-68309928) | |
| 279-446, gnl|Hg17|chr16 (68309939-68309772) | |
| 279-446, gnl|loxAfr1|scaffold_7960 (54497-54654) | |
| 279-446, gnl|mm7|chr8 (105992990-105993145) | |
| 279-446, gnl|Mm7|chr8 (105993156-105992989) | |
| 279-446, gnl|monDom2|scaffold_23 (4448671-4448516) | |
| 279-446, gnl|oryCun1|scaffold_202257 (70614-70459) | |
| 279-446, gnl|panTro1|chr18 (62659449-62659604) | |
| 279-446, gnl|rheMac2|chr20 (68102359-68102514) | |
| 279-446, gnl|rn3|chr19 (37261853-37262008) | |
| 279-446, gnl|tetNig1|chrUn_random (6733886-6734041) | |
| 279-446, gnl|xenTro1|scaffold_578 (422949-423104) | |
| 572-689, gnl|bosTau2|chr18 (30327073-30326956) | |
| 572-689, gnl|Hg17|chr16 (68306485-68306368) | |
| 572-689, gnl|Mm7|chr8 (105992382-105992265) | |
| 788-1185, gnl|bosTau2|chr18 (30325345-30324948) | |
| 788-1185, gnl|Hg17|chr16 (68302689-68302294) | |
| 788-1185, gnl|Mm7|chr8 (105989271-105988891) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 279-446, gnl|bosTau2|chr18 (30329660-30329493) | |
| 279-446, gnl|canFam2|chr5 (82991720-82991565) | |
| 279-446, gnl|danRer3|chr7 (46065151-46064996) | |
| 279-446, gnl|dasNov1|scaffold_11729 (46124-45969) | |
| 279-446, gnl|echTel1|scaffold_280090 (7539-7384) | |
| 279-446, gnl|fr1|chrUn (23850038-23850193) | |
| 279-446, gnl|hg17|chr16 (68309773-68309928) | |
| 279-446, gnl|Hg17|chr16 (68309939-68309772) | |
| 279-446, gnl|loxAfr1|scaffold_7960 (54497-54654) | |
| 279-446, gnl|mm7|chr8 (105992990-105993145) | |
| 279-446, gnl|Mm7|chr8 (105993156-105992989) | |
| 279-446, gnl|monDom2|scaffold_23 (4448671-4448516) | |
| 279-446, gnl|oryCun1|scaffold_202257 (70614-70459) | |
| 279-446, gnl|panTro1|chr18 (62659449-62659604) | |
| 279-446, gnl|rheMac2|chr20 (68102359-68102514) | |
| 279-446, gnl|rn3|chr19 (37261853-37262008) | |
| 279-446, gnl|tetNig1|chrUn_random (6733886-6734041) | |
| 279-446, gnl|xenTro1|scaffold_578 (422949-423104) | |
| 572-689, gnl|bosTau2|chr18 (30327073-30326956) | |
| 572-689, gnl|Hg17|chr16 (68306485-68306368) | |
| 572-689, gnl|Mm7|chr8 (105992382-105992265) | |
| 788-1185, gnl|bosTau2|chr18 (30325345-30324948) | |
| 788-1185, gnl|Hg17|chr16 (68302689-68302294) | |
| 788-1185, gnl|Mm7|chr8 (105989271-105988891) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| tes (0.415628) | |
| bla (0.248694) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| duo (0.172801) | |
| cov (0.132153) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.415628) | |
| bla (0.248694) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| duo (0.172801) | |
| cov (0.132153) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| spc (0.113366) | |
| eje (0.0988338) |