Non-Coding RNA Search

Ss1.1-Ova1-OVR010008A05.5

Sequence:


               
               GTTCCCCGCCTCAGGTCCCGCTGCGCCTCTTCGTCGATTCTCGCCCGCTGTCGCCGCCGC
CGAAATGTCGACAGGTGCGCCTGCAGGTTCCAGCGCTGCCGCTGGCAGCAACAGAAGACT
TCAGCAGACACAAAATCAAGTGGACGAGGTGGTGGATATCATGAGAGTCAACGTGGATAA
GGTGCTGGAACGGGACCAGAAGCTCTCTGAGCTGGATGACCGAGCAGACGCGCTGCAGGC
GGGAGCCTCCCAATTTGAAACAAGTGCTGCCAAGTTGAAGAGAAAATATTGGTGGAAGAA
CTGCAAGATGTGGGCCATCGGCATCAGCGTCGTGGTCATCATTGTCATCATCATCATCGT
CTGGAGTGTTTCTTCCTGAAGAACCAGCGAACCTCCAGCCTGCTGTTCAACAGACCTCCT
CAAGACTTTTGACGTCGACCCTGCTCTCGTATCAAGCTTACCTACTGTTCTATCTAAAAT
GATTAGTTCCTGTTTGTTACTGTAAAGTTTGTTTTCTAGGAAATGTGCCTTTGTTTTGTA
ATCTGCACTCCAAACTCAAAGAGTGGTCTGCCCGGCCCCCGTTTTGCCTGGTGCCTGTTC
AGATCACCTGGGGCTGAGGAAGCGGGCGTCTTAGGTTCCAGAGCCGTGATGCCCGAAGAA
GTGTCGTCTGGTGAGCGGCCGTTGACCCCTTAGGGAAATCTGTTCCCAGCTCACTGCTGT
CCTGTGCCGTCAGCCCCTGTCTACGCCTCCGGGTCATCGGATTCCCCAGAGTGCCTTCCA
GAAAGAACACTACTGCCTGACACACATCTGTGATAATAACAGGCCGTGCCTTATTTTGCT
CTTTTTCTGATTCCCTGTCAAAGAACCCGCCACTGTTTATAAACACTACTGACTCTTTTG
CTGTATTTAAAATAAGATGCTGGCGAAGCGTTTTTGCTCTTACATGGGGTATGAAGCTGT
TTACTTTCTCGTTACTGTTATGTATCCCTTGCTAAAAATATTGTTTTAACGGAGAAATAA
TAACCTCTCTAAAGCATTTTTACAGACCTGTGGCTGTGACCAAAGTTTCTCTTTTGCCAA
AAAGTTGAATCCCAGTCAAATGTCACGTCTGTCCCTGACAGTTAAAATCAGAAAGGGACC
CGGGGGACTGACAGTGCCCCTCAGAATTATAATTGTAACATTGCATTGGAAGCTCTGGCT
CCTGGCAGGCCTTTTGTGCCCGAGAAAGGCTGTAGGTCATGCACTCCCTTTCCGAGTTCC
CGTTTTTCCTGGAGGTTAGAGCGAGCCTCTCACTCTCTCAGACCTGCAGACAGTTTCACC
AGCCATTTGAACGCTGCCGACTCCACTGGGTTGCTGATACTTCCGTGAGCAGCGATTTTG
TGGCCTTCAGGGGAGGCCGTCTGGGTCATTTTCTGGCCCAGTCCCCAGAGAGTATAGCTT
TTCCGAGTTTGTTTCCTATTTTTATCCATAGTCCCCCTCCTAAACCTGTCTTCTCAGCTC
TGCTGCTGTTCGGGCGTTGCTCAGACAGATGGCTCCTGTCACAGAGGCCGCCTAGCCAGA
GACCTTTCTTTTTGGATGTCACAGACCGTCTGCATAAAAGGCTGCTGTGGGGACAGCTGA
ATCCGAGAGACTTGTTGTGCATGTGAGCCTTGCAGCATCAGGGTGTGTGGCTTAAGGATG
GGAATTCAGGGAGGAATGAGACCAGGCCGAGAGGCACGGAGGGAGAAAGCAGTTTTAGCA
CTCTGTGGCTCACGGTTCCTGGAATGTTCTAAAATTCGTGTTCACACGCTAGTTTGTGAC
TCACCAGGTGACAGCAGTTACGGGGCCCCAGGACCCAGGTTCCGTTGCCCTCATTTCTGC
TCCCCAACATCAGTGACATGACGTGACGTTGAGGACACGCCTGGCGATGCGCCCAGCTGG
GTGAGGGGAGCGGCCGTCAGGGTCGGATGATGGCCAGCCCTCGGCTCCGGCCTCCAGCGG
GGTCGGACTCTGAAACCTTGGTGCTCTCTGCTTGGTCTTGATGCTCAGTCCCAAGAAACC
CTCTGGCGCCTTCATTAACCCGGGAATACGCTGCTTATATCTGTGCCTTTAGCTGGGACC
GTGCCCACGGCAATGAACTGAATAAAGTGTTTCTAAGTGTAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCCCGCCTCAGGTCCCGCTGCGCCTCTTCGTCGATTCTCGCCCGCTGTCGCCGCCGC
CGAAATGTCGACAGGTGCGCCTGCAGGTTCCAGCGCTGCCGCTGGCAGCAACAGAAGACT
TCAGCAGACACAAAATCAAGTGGACGAGGTGGTGGATATCATGAGAGTCAACGTGGATAA
GGTGCTGGAACGGGACCAGAAGCTCTCTGAGCTGGATGACCGAGCAGACGCGCTGCAGGC
GGGAGCCTCCCAATTTGAAACAAGTGCTGCCAAGTTGAAGAGAAAATATTGGTGGAAGAA
CTGCAAGATGTGGGCCATCGGCATCAGCGTCGTGGTCATCATTGTCATCATCATCATCGT
CTGGAGTGTTTCTTCCTGAAGAACCAGCGAACCTCCAGCCTGCTGTTCAACAGACCTCCT
CAAGACTTTTGACGTCGACCCTGCTCTCGTATCAAGCTTACCTACTGTTCTATCTAAAAT
GATTAGTTCCTGTTTGTTACTGTAAAGTTTGTTTTCTAGGAAATGTGCCTTTGTTTTGTA
ATCTGCACTCCAAACTCAAAGAGTGGTCTGCCCGGCCCCCGTTTTGCCTGGTGCCTGTTC
AGATCACCTGGGGCTGAGGAAGCGGGCGTCTTAGGTTCCAGAGCCGTGATGCCCGAAGAA
GTGTCGTCTGGTGAGCGGCCGTTGACCCCTTAGGGAAATCTGTTCCCAGCTCACTGCTGT
CCTGTGCCGTCAGCCCCTGTCTACGCCTCCGGGTCATCGGATTCCCCAGAGTGCCTTCCA
GAAAGAACACTACTGCCTGACACACATCTGTGATAATAACAGGCCGTGCCTTATTTTGCT
CTTTTTCTGATTCCCTGTCAAAGAACCCGCCACTGTTTATAAACACTACTGACTCTTTTG
CTGTATTTAAAATAAGATGCTGGCGAAGCGTTTTTGCTCTTACATGGGGTATGAAGCTGT
TTACTTTCTCGTTACTGTTATGTATCCCTTGCTAAAAATATTGTTTTAACGGAGAAATAA
TAACCTCTCTAAAGCATTTTTACAGACCTGTGGCTGTGACCAAAGTTTCTCTTTTGCCAA
AAAGTTGAATCCCAGTCAAATGTCACGTCTGTCCCTGACAGTTAAAATCAGAAAGGGACC
CGGGGGACTGACAGTGCCCCTCAGAATTATAATTGTAACATTGCATTGGAAGCTCTGGCT
CCTGGCAGGCCTTTTGTGCCCGAGAAAGGCTGTAGGTCATGCACTCCCTTTCCGAGTTCC
CGTTTTTCCTGGAGGTTAGAGCGAGCCTCTCACTCTCTCAGACCTGCAGACAGTTTCACC
AGCCATTTGAACGCTGCCGACTCCACTGGGTTGCTGATACTTCCGTGAGCAGCGATTTTG
TGGCCTTCAGGGGAGGCCGTCTGGGTCATTTTCTGGCCCAGTCCCCAGAGAGTATAGCTT
TTCCGAGTTTGTTTCCTATTTTTATCCATAGTCCCCCTCCTAAACCTGTCTTCTCAGCTC
TGCTGCTGTTCGGGCGTTGCTCAGACAGATGGCTCCTGTCACAGAGGCCGCCTAGCCAGA
GACCTTTCTTTTTGGATGTCACAGACCGTCTGCATAAAAGGCTGCTGTGGGGACAGCTGA
ATCCGAGAGACTTGTTGTGCATGTGAGCCTTGCAGCATCAGGGTGTGTGGCTTAAGGATG
GGAATTCAGGGAGGAATGAGACCAGGCCGAGAGGCACGGAGGGAGAAAGCAGTTTTAGCA
CTCTGTGGCTCACGGTTCCTGGAATGTTCTAAAATTCGTGTTCACACGCTAGTTTGTGAC
TCACCAGGTGACAGCAGTTACGGGGCCCCAGGACCCAGGTTCCGTTGCCCTCATTTCTGC
TCCCCAACATCAGTGACATGACGTGACGTTGAGGACACGCCTGGCGATGCGCCCAGCTGG
GTGAGGGGAGCGGCCGTCAGGGTCGGATGATGGCCAGCCCTCGGCTCCGGCCTCCAGCGG
GGTCGGACTCTGAAACCTTGGTGCTCTCTGCTTGGTCTTGATGCTCAGTCCCAAGAAACC
CTCTGGCGCCTTCATTAACCCGGGAATACGCTGCTTATATCTGTGCCTTTAGCTGGGACC
GTGCCCACGGCAATGAACTGAATAAAGTGTTTCTAAGTGTAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               VAMP3_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               VAMP3_RAT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               147-307, gnl|bosTau2|chr16 (29866018-29866178)
               

               
               147-307, gnl|Hg17|chr1 (7771484-7771644)
               

               
               147-307, gnl|Mm7|chr4 (150040619-150040459)
               


               
               359-2136, gnl|bosTau2|chr16 (29867799-29869580)
               

               
               359-2136, gnl|Hg17|chr1 (7773951-7775752)
               

               
               359-2136, gnl|Mm7|chr4 (150038589-150036852)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               147-307, gnl|bosTau2|chr16 (29866018-29866178)
               

               
               147-307, gnl|Hg17|chr1 (7771484-7771644)
               

               
               147-307, gnl|Mm7|chr4 (150040619-150040459)
               


               
               359-2136, gnl|bosTau2|chr16 (29867799-29869580)
               

               
               359-2136, gnl|Hg17|chr1 (7773951-7775752)
               

               
               359-2136, gnl|Mm7|chr4 (150038589-150036852)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

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               cty (0.72856)
               

               
               duo (0.518403)
               

               
               cly (0.482567)
               

               
               hea (0.408998)
               

               
               mcp (0.341297)
               

               
               tbr (0.308356)
               

               
               cga (0.279096)
               

               
               ute (0.265569)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               cbl (0.229595)
               

               
               nms (0.213858)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.72856)
               

               
               duo (0.518403)
               

               
               cly (0.482567)
               

               
               hea (0.408998)
               

               
               mcp (0.341297)
               

               
               tbr (0.308356)
               

               
               cga (0.279096)
               

               
               ute (0.265569)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               cbl (0.229595)
               

               
               nms (0.213858)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

	147-307, gnl\|bosTau2\|chr16 (29866018-29866178)
	147-307, gnl\|Hg17\|chr1 (7771484-7771644)
	147-307, gnl\|Mm7\|chr4 (150040619-150040459)

	359-2136, gnl\|bosTau2\|chr16 (29867799-29869580)
	359-2136, gnl\|Hg17\|chr1 (7773951-7775752)
	359-2136, gnl\|Mm7\|chr4 (150038589-150036852)

	cty (0.72856)
	duo (0.518403)
	cly (0.482567)
	hea (0.408998)
	mcp (0.341297)
	tbr (0.308356)
	cga (0.279096)
	ute (0.265569)
	eep (0.245128)
	eru (0.240096)
	med (0.232504)
	cbl (0.229595)
	nms (0.213858)
	nlu (0.191681)
	fbs (0.175346)
	fhi (0.169578)
	nco (0.161734)
	csp (0.161186)
	cli (0.152812)
	bfe (0.149858)
	fat (0.147427)
	hyp (0.142837)
	hlv (0.139256)
	ese (0.126502)
	bla (0.124347)
	clu (0.119646)
	jca (0.11396)