Ss1.1-Ova1-OVR010009A09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTACAGAACAGCAGCATGGAGGATCCAGAGCTATTGGGTTTTGAACACATGGGCCTAGA CCCCCGGCTCCTACAGGCCGTTACCGACCTGGGCTGGTCGCGACCCACGCTGATCCAGGA AAAAGCCATTCCTTTGGCCCTTGAGGGGAAGGACCTCCTGGCTCGGGCCCGCACGGGGTC AGGGAAGACCGCTGCTTATGCCATTCCGATGCTGCAGCTGCTGCTCCACAGGAAGGCGAT AGGCCCTGCGGTCGAGCAGGCTGTGAGAGGCCTTGTCCTTGTGCCGACCAAGGACCTGGC TCGGCAGGCCCAGTCCATGATTCAGCAGCTGGCTGCCTATTGTGCTCGAGATATCCGGGT GGCCAACGTCTCAGCGGCTGAAGACTCAGCTTCTCAGAGAGCTGTGCTGATGGAGAAGCC TGATATAGTGGTGGGGACCCCATCTCGGATATTAAACCACTTGCAGCAAGACAACTTAAA ACTGCGCGACTCCCTGGAGCTGCTGGTGGTGGATGAGGCTGATCTCCTTTTCTCCTTTGG CTTTGAGGAAGAGCTCAAGAGTCTTCTCTGCCACTTGCCCCGGATTTACCAGGCTTTTCT GATGTCCGCCACGTTTAACGAGGATGTACAGGCACTCAAGGAGCTGGTGCTGCATAACCC GGTTACCCTCAAGTTACAGGAGTCCCAGCTGCCAGGGCCAGACCAGCTGCAGCAGTTTCA GGTGGTCTGTGAGACCGAGGAAGACAAATTTCTGCTGCTGTACGCCCTGCTCAAGCTGTC TTTGATTCGGGGAAAGTCTCTGCTCTTCGTCAACACTCTGGAGCGGAGCTACCGGCTGCG CCTCTTCCTGGAGCAGTTCAGCATCCCCGCCTGCGTGCTCAACGGAGAGCTCCCACTGCG CTCGAGGTGCCACATCATCTCCCAGTTCAACCAAGGCCTCTATGACTGTGTCATAGCGAC AGATGCTGAAGTCCTGGGGCCTCCGGTCAAGGGGAAGGGCAAGCAGCGGGGCAAAGGACC CAAGGGAGAGAGGGCTTCTGATCCGGAAGCAGGCGTGGCCCGTGGCATAGACTTCCACCA CGTGTGTGCTGTGCTCAACTTTGATCTCCCCCCGACCCCCGAGGCCTACATACACCGCGC CGGCAGGACGGCACGTGCCAACAACCCAGGCATAGTCTTGACCTTCGTGCTGCCCACAGA GCAGTCCCACCTGGGCAAGATCGAGGAGCTTCTCAGCGGAGAGAACGGGGCGCCCGCCCT GCTTCCCTACCAGTTCCGCATGGAGGAGATCGAGGGCTTCCGCTACCGCTGCAGGGACGC CATGCGCTCTGTGACCAAACAAGCCATCCGCGAGGCGCGGCTGAAGGAGATCAAGGAGGA GCTGCTGCACTCAGAGAAGCTCAAGACGTACTTTGAGGACAACCCGCGGGACCTCCAGCT GCTGCGGCACGACCTGCCCCTGCACCCGGCCGTGGTGAAGCCTCACCTGGGCAACGTCCC CGACTACCTGGTTCCTCCTGCTCTTCGCGGCCTCGTCCGCCCACACAAGAAGCGGAAGAA GCCCCTGTCCGCTAAGAAGGCCAAGAAGGTGAAGACCCAGAACCCACTGCGCAGCTTCAA GCACCGAGGAGAGAAACGCAGAGCCGAGCCCTCCTGAGGTGGTCGGGCGGCCTCAGCTAC CATCTCGGGCCTCTCCCGGGGCGGAGGACAGGGTGGAGCAGGTTCCCGAGCCTGGAGGGC GCTTGACTCCCAGCCTGGGCGGACTGCATTCGGGGCAGGCAGAACTGTGGCCTCCCACAT CCCGGCCCGATGGCGCCTTGCCTTTAACAGAATAAAGGTTCTAGCTGCCAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTACAGAACAGCAGCATGGAGGATCCAGAGCTATTGGGTTTTGAACACATGGGCCTAGA CCCCCGGCTCCTACAGGCCGTTACCGACCTGGGCTGGTCGCGACCCACGCTGATCCAGGA AAAAGCCATTCCTTTGGCCCTTGAGGGGAAGGACCTCCTGGCTCGGGCCCGCACGGGGTC AGGGAAGACCGCTGCTTATGCCATTCCGATGCTGCAGCTGCTGCTCCACAGGAAGGCGAT AGGCCCTGCGGTCGAGCAGGCTGTGAGAGGCCTTGTCCTTGTGCCGACCAAGGACCTGGC TCGGCAGGCCCAGTCCATGATTCAGCAGCTGGCTGCCTATTGTGCTCGAGATATCCGGGT GGCCAACGTCTCAGCGGCTGAAGACTCAGCTTCTCAGAGAGCTGTGCTGATGGAGAAGCC TGATATAGTGGTGGGGACCCCATCTCGGATATTAAACCACTTGCAGCAAGACAACTTAAA ACTGCGCGACTCCCTGGAGCTGCTGGTGGTGGATGAGGCTGATCTCCTTTTCTCCTTTGG CTTTGAGGAAGAGCTCAAGAGTCTTCTCTGCCACTTGCCCCGGATTTACCAGGCTTTTCT GATGTCCGCCACGTTTAACGAGGATGTACAGGCACTCAAGGAGCTGGTGCTGCATAACCC GGTTACCCTCAAGTTACAGGAGTCCCAGCTGCCAGGGCCAGACCAGCTGCAGCAGTTTCA GGTGGTCTGTGAGACCGAGGAAGACAAATTTCTGCTGCTGTACGCCCTGCTCAAGCTGTC TTTGATTCGGGGAAAGTCTCTGCTCTTCGTCAACACTCTGGAGCGGAGCTACCGGCTGCG CCTCTTCCTGGAGCAGTTCAGCATCCCCGCCTGCGTGCTCAACGGAGAGCTCCCACTGCG CTCGAGGTGCCACATCATCTCCCAGTTCAACCAAGGCCTCTATGACTGTGTCATAGCGAC AGATGCTGAAGTCCTGGGGCCTCCGGTCAAGGGGAAGGGCAAGCAGCGGGGCAAAGGACC CAAGGGAGAGAGGGCTTCTGATCCGGAAGCAGGCGTGGCCCGTGGCATAGACTTCCACCA CGTGTGTGCTGTGCTCAACTTTGATCTCCCCCCGACCCCCGAGGCCTACATACACCGCGC CGGCAGGACGGCACGTGCCAACAACCCAGGCATAGTCTTGACCTTCGTGCTGCCCACAGA GCAGTCCCACCTGGGCAAGATCGAGGAGCTTCTCAGCGGAGAGAACGGGGCGCCCGCCCT GCTTCCCTACCAGTTCCGCATGGAGGAGATCGAGGGCTTCCGCTACCGCTGCAGGGACGC CATGCGCTCTGTGACCAAACAAGCCATCCGCGAGGCGCGGCTGAAGGAGATCAAGGAGGA GCTGCTGCACTCAGAGAAGCTCAAGACGTACTTTGAGGACAACCCGCGGGACCTCCAGCT GCTGCGGCACGACCTGCCCCTGCACCCGGCCGTGGTGAAGCCTCACCTGGGCAACGTCCC CGACTACCTGGTTCCTCCTGCTCTTCGCGGCCTCGTCCGCCCACACAAGAAGCGGAAGAA GCCCCTGTCCGCTAAGAAGGCCAAGAAGGTGAAGACCCAGAACCCACTGCGCAGCTTCAA GCACCGAGGAGAGAAACGCAGAGCCGAGCCCTCCTGAGGTGGTCGGGCGGCCTCAGCTAC CATCTCGGGCCTCTCCCGGGGCGGAGGACAGGGTGGAGCAGGTTCCCGAGCCTGGAGGGC GCTTGACTCCCAGCCTGGGCGGACTGCATTCGGGGCAGGCAGAACTGTGGCCTCCCACAT CCCGGCCCGATGGCGCCTTGCCTTTAACAGAATAAAGGTTCTAGCTGCCAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 80 entry(ies) | More info |
| Aligned organism(s): 80 entry(ies) | Help | Less info |
| 75-238, gnl|bosTau2|chr4 (42943824-42943661) | |
| 75-238, gnl|Hg17|chr7 (44386585-44386422) | |
| 75-238, gnl|Mm7|chr11 (6219584-6219421) | |
| 398-570, gnl|bosTau2|chr4 (42942360-42942188) | |
| 398-570, gnl|canFam2|chrUn (26145929-26146100) | |
| 398-570, gnl|canFam2|chrUn (26146106-26145912) | |
| 398-570, gnl|danRer3|chrUn (27453741-27453570) | |
| 398-570, gnl|danRer3|chrUn (27453564-27453754) | |
| 398-570, gnl|dasNov1|scaffold_79038 (762-591) | |
| 398-570, gnl|dasNov1|scaffold_79038 (585-779) | |
| 398-570, gnl|echTel1|scaffold_200433 (11892-11700) | |
| 398-570, gnl|echTel1|scaffold_324734 (16274-16453) | |
| 398-570, gnl|fr1|chrUn (54276407-54276236) | |
| 398-570, gnl|fr1|chrUn (54276230-54276420) | |
| 398-570, gnl|hg17|chr1 (157718783-157718950) | |
| 398-570, gnl|hg17|chr7 (44385409-44385603) | |
| 398-570, gnl|Hg17|chr7 (44385585-44385413) | |
| 398-570, gnl|loxAfr1|scaffold_47395 (10545-10714) | |
| 398-570, gnl|loxAfr1|scaffold_47395 (10720-10526) | |
| 398-570, gnl|mm7|chr11 (6218688-6218517) | |
| 398-570, gnl|mm7|chr11 (6218511-6218691) | |
| 398-570, gnl|Mm7|chr11 (6218687-6218515) | |
| 398-570, gnl|panTro1|chr1 (139783049-139783216) | |
| 398-570, gnl|panTro1|chr6 (45901742-45901936) | |
| 398-570, gnl|rheMac2|chr3 (81771709-81771880) | |
| 398-570, gnl|rheMac2|chr3 (81771886-81771692) | |
| 398-570, gnl|rn3|chr14 (87012608-87012437) | |
| 398-570, gnl|rn3|chr14 (87012431-87012624) | |
| 398-570, gnl|tetNig1|chrUn_random (293485-293655) | |
| 398-570, gnl|tetNig1|chrUn_random (293658-293471) | |
| 398-570, gnl|xenTro1|scaffold_217 (1287861-1287681) | |
| 661-909, gnl|bosTau2|chr4 (42941423-42941175) | |
| 661-909, gnl|canFam2|chrUn (26147065-26146808) | |
| 661-909, gnl|danRer3|chrUn (27448600-27448854) | |
| 661-909, gnl|echTel1|scaffold_200433 (13614-13357) | |
| 661-909, gnl|fr1|chrUn (54275492-54275742) | |
| 661-909, gnl|hg17|chr7 (44384323-44384580) | |
| 661-909, gnl|Hg17|chr7 (44384576-44384328) | |
| 661-909, gnl|mm7|chr11 (6217507-6217764) | |
| 661-909, gnl|Mm7|chr11 (6217760-6217512) | |
| 661-909, gnl|monDom2|scaffold_1 (155179184-155178933) | |
| 661-909, gnl|panTro1|chr6 (45900657-45900914) | |
| 661-909, gnl|rheMac2|chr3 (81772972-81772715) | |
| 661-909, gnl|rn3|chr14 (87011524-87011781) | |
| 661-909, gnl|tetNig1|chrUn_random (294204-293957) | |
| 661-909, gnl|xenTro1|scaffold_217 (1289591-1289344) | |
| 1031-1147, gnl|bosTau2|chr4 (42940265-42940149) | |
| 1031-1147, gnl|canFam2|chrUn (26148180-26148035) | |
| 1031-1147, gnl|danRer3|chrUn (27446947-27447089) | |
| 1031-1147, gnl|echTel1|scaffold_200433 (14634-14492) | |
| 1031-1147, gnl|fr1|chrUn (54274951-54275080) | |
| 1031-1147, gnl|hg17|chr7 (44382852-44382995) | |
| 1031-1147, gnl|Hg17|chr7 (44382969-44382853) | |
| 1031-1147, gnl|loxAfr1|scaffold_47395 (13249-13109) | |
| 1031-1147, gnl|mm7|chr11 (6216125-6216268) | |
| 1031-1147, gnl|Mm7|chr11 (6216242-6216126) | |
| 1031-1147, gnl|monDom2|scaffold_1 (155179976-155179851) | |
| 1031-1147, gnl|panTro1|chr6 (45899182-45899326) | |
| 1031-1147, gnl|rheMac2|chr3 (81774449-81774306) | |
| 1031-1147, gnl|rn3|chr14 (87009976-87010119) | |
| 1031-1147, gnl|tetNig1|chrUn_random (294690-294593) | |
| 1031-1147, gnl|xenTro1|scaffold_217 (1296408-1296289) | |
| 1404-1511, gnl|bosTau2|chr4 (42938539-42938432) | |
| 1404-1511, gnl|canFam2|chrUn (26149902-26149776) | |
| 1404-1511, gnl|danRer3|chrUn (27445148-27445276) | |
| 1404-1511, gnl|echTel1|scaffold_324734 (17556-17477) | |
| 1404-1511, gnl|fr1|chrUn (54274155-54274285) | |
| 1404-1511, gnl|hg17|chr7 (44380932-44381066) | |
| 1404-1511, gnl|Hg17|chr7 (44381064-44380957) | |
| 1404-1511, gnl|mm7|chr11 (6213596-6213728) | |
| 1404-1511, gnl|Mm7|chr11 (6213726-6213619) | |
| 1404-1511, gnl|monDom2|scaffold_1 (155183182-155183072) | |
| 1404-1511, gnl|panTro1|chr6 (45897263-45897397) | |
| 1404-1511, gnl|rheMac2|chr3 (81776356-81776222) | |
| 1404-1511, gnl|rn3|chr14 (87007815-87007947) | |
| 1404-1511, gnl|tetNig1|chrUn_random (295417-295304) | |
| 1404-1511, gnl|xenTro1|scaffold_217 (1300613-1300498) | |
| 1584-1849, gnl|bosTau2|chr4 (42934929-42934658) | |
| 1584-1849, gnl|Hg17|chr7 (44378920-44378646) | |
| 1584-1849, gnl|Mm7|chr11 (6211263-6210988) |
| Aligned organism(s): 80 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 75-238, gnl|bosTau2|chr4 (42943824-42943661) | |
| 75-238, gnl|Hg17|chr7 (44386585-44386422) | |
| 75-238, gnl|Mm7|chr11 (6219584-6219421) | |
| 398-570, gnl|bosTau2|chr4 (42942360-42942188) | |
| 398-570, gnl|canFam2|chrUn (26145929-26146100) | |
| 398-570, gnl|canFam2|chrUn (26146106-26145912) | |
| 398-570, gnl|danRer3|chrUn (27453741-27453570) | |
| 398-570, gnl|danRer3|chrUn (27453564-27453754) | |
| 398-570, gnl|dasNov1|scaffold_79038 (762-591) | |
| 398-570, gnl|dasNov1|scaffold_79038 (585-779) | |
| 398-570, gnl|echTel1|scaffold_200433 (11892-11700) | |
| 398-570, gnl|echTel1|scaffold_324734 (16274-16453) | |
| 398-570, gnl|fr1|chrUn (54276407-54276236) | |
| 398-570, gnl|fr1|chrUn (54276230-54276420) | |
| 398-570, gnl|hg17|chr1 (157718783-157718950) | |
| 398-570, gnl|hg17|chr7 (44385409-44385603) | |
| 398-570, gnl|Hg17|chr7 (44385585-44385413) | |
| 398-570, gnl|loxAfr1|scaffold_47395 (10545-10714) | |
| 398-570, gnl|loxAfr1|scaffold_47395 (10720-10526) | |
| 398-570, gnl|mm7|chr11 (6218688-6218517) | |
| 398-570, gnl|mm7|chr11 (6218511-6218691) | |
| 398-570, gnl|Mm7|chr11 (6218687-6218515) | |
| 398-570, gnl|panTro1|chr1 (139783049-139783216) | |
| 398-570, gnl|panTro1|chr6 (45901742-45901936) | |
| 398-570, gnl|rheMac2|chr3 (81771709-81771880) | |
| 398-570, gnl|rheMac2|chr3 (81771886-81771692) | |
| 398-570, gnl|rn3|chr14 (87012608-87012437) | |
| 398-570, gnl|rn3|chr14 (87012431-87012624) | |
| 398-570, gnl|tetNig1|chrUn_random (293485-293655) | |
| 398-570, gnl|tetNig1|chrUn_random (293658-293471) | |
| 398-570, gnl|xenTro1|scaffold_217 (1287861-1287681) | |
| 661-909, gnl|bosTau2|chr4 (42941423-42941175) | |
| 661-909, gnl|canFam2|chrUn (26147065-26146808) | |
| 661-909, gnl|danRer3|chrUn (27448600-27448854) | |
| 661-909, gnl|echTel1|scaffold_200433 (13614-13357) | |
| 661-909, gnl|fr1|chrUn (54275492-54275742) | |
| 661-909, gnl|hg17|chr7 (44384323-44384580) | |
| 661-909, gnl|Hg17|chr7 (44384576-44384328) | |
| 661-909, gnl|mm7|chr11 (6217507-6217764) | |
| 661-909, gnl|Mm7|chr11 (6217760-6217512) | |
| 661-909, gnl|monDom2|scaffold_1 (155179184-155178933) | |
| 661-909, gnl|panTro1|chr6 (45900657-45900914) | |
| 661-909, gnl|rheMac2|chr3 (81772972-81772715) | |
| 661-909, gnl|rn3|chr14 (87011524-87011781) | |
| 661-909, gnl|tetNig1|chrUn_random (294204-293957) | |
| 661-909, gnl|xenTro1|scaffold_217 (1289591-1289344) | |
| 1031-1147, gnl|bosTau2|chr4 (42940265-42940149) | |
| 1031-1147, gnl|canFam2|chrUn (26148180-26148035) | |
| 1031-1147, gnl|danRer3|chrUn (27446947-27447089) | |
| 1031-1147, gnl|echTel1|scaffold_200433 (14634-14492) | |
| 1031-1147, gnl|fr1|chrUn (54274951-54275080) | |
| 1031-1147, gnl|hg17|chr7 (44382852-44382995) | |
| 1031-1147, gnl|Hg17|chr7 (44382969-44382853) | |
| 1031-1147, gnl|loxAfr1|scaffold_47395 (13249-13109) | |
| 1031-1147, gnl|mm7|chr11 (6216125-6216268) | |
| 1031-1147, gnl|Mm7|chr11 (6216242-6216126) | |
| 1031-1147, gnl|monDom2|scaffold_1 (155179976-155179851) | |
| 1031-1147, gnl|panTro1|chr6 (45899182-45899326) | |
| 1031-1147, gnl|rheMac2|chr3 (81774449-81774306) | |
| 1031-1147, gnl|rn3|chr14 (87009976-87010119) | |
| 1031-1147, gnl|tetNig1|chrUn_random (294690-294593) | |
| 1031-1147, gnl|xenTro1|scaffold_217 (1296408-1296289) | |
| 1404-1511, gnl|bosTau2|chr4 (42938539-42938432) | |
| 1404-1511, gnl|canFam2|chrUn (26149902-26149776) | |
| 1404-1511, gnl|danRer3|chrUn (27445148-27445276) | |
| 1404-1511, gnl|echTel1|scaffold_324734 (17556-17477) | |
| 1404-1511, gnl|fr1|chrUn (54274155-54274285) | |
| 1404-1511, gnl|hg17|chr7 (44380932-44381066) | |
| 1404-1511, gnl|Hg17|chr7 (44381064-44380957) | |
| 1404-1511, gnl|mm7|chr11 (6213596-6213728) | |
| 1404-1511, gnl|Mm7|chr11 (6213726-6213619) | |
| 1404-1511, gnl|monDom2|scaffold_1 (155183182-155183072) | |
| 1404-1511, gnl|panTro1|chr6 (45897263-45897397) | |
| 1404-1511, gnl|rheMac2|chr3 (81776356-81776222) | |
| 1404-1511, gnl|rn3|chr14 (87007815-87007947) | |
| 1404-1511, gnl|tetNig1|chrUn_random (295417-295304) | |
| 1404-1511, gnl|xenTro1|scaffold_217 (1300613-1300498) | |
| 1584-1849, gnl|bosTau2|chr4 (42934929-42934658) | |
| 1584-1849, gnl|Hg17|chr7 (44378920-44378646) | |
| 1584-1849, gnl|Mm7|chr11 (6211263-6210988) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ecc (0.23007) | |
| ton (0.1755) | |
| pty (0.142714) | |
| cov (0.132153) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.23007) | |
| ton (0.1755) | |
| pty (0.142714) | |
| cov (0.132153) | |
| cty (0.10408) |