Ss1.1-Ova1-OVR010009C02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGACTGGATTAGGCCGGGCCACACAGAGGCCGGCTTGGTCACTATGGAGGAGATAGGCAT CCTGGTGGAGAAAGCTCAGGATGAGATCCCAGCTCTGTCTGTGTCACGGCCCCAGACTGG CCTGTCCTTCTTGGGGCCTGAGCCTGAGGACCTGGAGGACCTGTACAGCCGCTACAAGAA GCTGCAGCAAGAGCTGGAGTTCCTGGAGGTGCAGGAGGAGTACATCAAGGATGAGCAAAA GAACCTGAAGAAGGAATTCCTCCACGCCCAGGAGGAGGTGAAGCGAATCCAAAGCATCCC ACTAGTTATCGGGCAGTTTCTGGAGGCTGTGGATCAGAATACAGCCATCGTGGGCTCCAC CACAGGCTCCAACTACTATGTGCGCATCCTGAGCACCATTGATCGGGAGCTGCTCAAGCC CAATGCCTCGGTGGCGCTCCACAAGCACAGCAATGCCCTGGTGGATGTGCTGCCTCCCGA GGCCGACAGCAGCATCATGATGCTCACCTCAGACCAGAAGCCAGACGTGATGTACGCGGA CATCGGGGGCATGGACATCCAGAAGCAGGAGGTGCGGGAGGCCGTGGAGCTCCCGCTTAC ACACTTCGAGCTCTACAAGCAGATCGGCATCGACCCTCCCCGAGGCGTCCTCATGTACGG CCCGCCCGGCTGCGGGAAGACCATGTTGGCAAAGGCTGTGGCTCATCACACGACAGCTGC ATTCATCCGAGTCGTGGGCTCAGAGTTTGTACAGAAGTACCTGGGTGAGGGCCCTCGCAT GGTCCGGGATGTGTTCCGCCTGGCCAAGGAGAACGCACCTGCCATCATCTTCATAGATGA GATCGATGCCATTGCCACCAAGAGATTTGATGCCCAGACAGGGGCTGACAGGGAGGTTCA GAGAATCCTGCTGGAGCTACTCAATCAAATGGATGGGTTCGACCAAAATGTCAATGTCAA GGTGATCATGGCCACAAACAGAGCAGACACCCTGGATCCTGCCCTGCTGCGGCCAGGACG CCTTGACCGAAAAATTGAATTTCCACTCCCTGACCGCCGCCAGAAGAGACTCATTTTCTC CACTATCACCAGCAAGATGAATCTCTCTGAGGAGGTTGATTTGGAAGATTATGTGGCCCG ACCAGATAAGATTTCAGGAGCTGATATCAACTCCATCTGTCAGGAGAGTGGGATGCTGGC TGTCCGGGAGAACCGCTACATCGTCCTGGCCAAGGACTTCGAGAAGGCCTACAAGACAGT CATCAAGAAGGACGAACAGGAGCATGAGTTTTACAAGTGACCCCTATCCCCACACCCCAG GAGCTGGGGACTTCTTACCTCTCTAGCCTGTCCCCTGTCCTCGTTCTCTTTTCTCTTTAC CCAGGATTGCTTTATTCATTAAACAGACAAGACTGAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGACTGGATTAGGCCGGGCCACACAGAGGCCGGCTTGGTCACTATGGAGGAGATAGGCAT CCTGGTGGAGAAAGCTCAGGATGAGATCCCAGCTCTGTCTGTGTCACGGCCCCAGACTGG CCTGTCCTTCTTGGGGCCTGAGCCTGAGGACCTGGAGGACCTGTACAGCCGCTACAAGAA GCTGCAGCAAGAGCTGGAGTTCCTGGAGGTGCAGGAGGAGTACATCAAGGATGAGCAAAA GAACCTGAAGAAGGAATTCCTCCACGCCCAGGAGGAGGTGAAGCGAATCCAAAGCATCCC ACTAGTTATCGGGCAGTTTCTGGAGGCTGTGGATCAGAATACAGCCATCGTGGGCTCCAC CACAGGCTCCAACTACTATGTGCGCATCCTGAGCACCATTGATCGGGAGCTGCTCAAGCC CAATGCCTCGGTGGCGCTCCACAAGCACAGCAATGCCCTGGTGGATGTGCTGCCTCCCGA GGCCGACAGCAGCATCATGATGCTCACCTCAGACCAGAAGCCAGACGTGATGTACGCGGA CATCGGGGGCATGGACATCCAGAAGCAGGAGGTGCGGGAGGCCGTGGAGCTCCCGCTTAC ACACTTCGAGCTCTACAAGCAGATCGGCATCGACCCTCCCCGAGGCGTCCTCATGTACGG CCCGCCCGGCTGCGGGAAGACCATGTTGGCAAAGGCTGTGGCTCATCACACGACAGCTGC ATTCATCCGAGTCGTGGGCTCAGAGTTTGTACAGAAGTACCTGGGTGAGGGCCCTCGCAT GGTCCGGGATGTGTTCCGCCTGGCCAAGGAGAACGCACCTGCCATCATCTTCATAGATGA GATCGATGCCATTGCCACCAAGAGATTTGATGCCCAGACAGGGGCTGACAGGGAGGTTCA GAGAATCCTGCTGGAGCTACTCAATCAAATGGATGGGTTCGACCAAAATGTCAATGTCAA GGTGATCATGGCCACAAACAGAGCAGACACCCTGGATCCTGCCCTGCTGCGGCCAGGACG CCTTGACCGAAAAATTGAATTTCCACTCCCTGACCGCCGCCAGAAGAGACTCATTTTCTC CACTATCACCAGCAAGATGAATCTCTCTGAGGAGGTTGATTTGGAAGATTATGTGGCCCG ACCAGATAAGATTTCAGGAGCTGATATCAACTCCATCTGTCAGGAGAGTGGGATGCTGGC TGTCCGGGAGAACCGCTACATCGTCCTGGCCAAGGACTTCGAGAAGGCCTACAAGACAGT CATCAAGAAGGACGAACAGGAGCATGAGTTTTACAAGTGACCCCTATCCCCACACCCCAG GAGCTGGGGACTTCTTACCTCTCTAGCCTGTCCCCTGTCCTCGTTCTCTTTTCTCTTTAC CCAGGATTGCTTTATTCATTAAACAGACAAGACTGAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 177-1417, - strand, RNAz p=0.999988 | |
| 960-1078, - strand, RNAz p=0.850575 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 177-1417, - strand, RNAz p=0.999988 | |
| 960-1078, - strand, RNAz p=0.850575 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 177-366, gnl|bosTau2|chr18 (46012893-46013082) | |
| 177-366, gnl|Hg17|chr19 (45170114-45170303) | |
| 177-366, gnl|Mm7|chr7 (24982879-24982690) | |
| 503-622, gnl|bosTau2|chr18 (46016757-46016876) | |
| 503-622, gnl|canFam2|chr1 (116462833-116462748) | |
| 503-622, gnl|danRer3|chr16 (38122689-38122774) | |
| 503-622, gnl|dasNov1|scaffold_94826 (297-212) | |
| 503-622, gnl|fr1|chrUn (137210695-137210756) | |
| 503-622, gnl|hg17|chr19 (45172256-45172341) | |
| 503-622, gnl|Hg17|chr19 (45172261-45172380) | |
| 503-622, gnl|loxAfr1|scaffold_5898 (56117-56032) | |
| 503-622, gnl|mm7|chr7 (24981315-24981230) | |
| 503-622, gnl|Mm7|chr7 (24981308-24981189) | |
| 503-622, gnl|monDom2|scaffold_139 (1260993-1261133) | |
| 503-622, gnl|oryCun1|scaffold_113476 (14130-14202) | |
| 503-622, gnl|panTro1|chr20 (42107330-42107415) | |
| 503-622, gnl|rheMac2|chr19 (46373085-46373170) | |
| 503-622, gnl|rn3|chr1 (83234687-83234602) | |
| 503-622, gnl|tetNig1|chrUn_random (119750256-119750200) | |
| 503-622, gnl|xenTro1|scaffold_1027 (111836-111919) | |
| 714-888, gnl|bosTau2|chr18 (46020476-46020650) | |
| 714-888, gnl|Hg17|chr19 (45177561-45177735) | |
| 714-888, gnl|Mm7|chr7 (24976995-24976821) | |
| 960-1130, gnl|bosTau2|chr18 (46020949-46021119) | |
| 960-1130, gnl|Hg17|chr19 (45178031-45178201) | |
| 960-1130, gnl|Mm7|chr7 (24976525-24976355) | |
| 1156-1417, gnl|bosTau2|chr18 (46021553-46021819) | |
| 1156-1417, gnl|Hg17|chr19 (45178618-45179184) | |
| 1156-1417, gnl|Mm7|chr7 (24975980-24975732) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 177-366, gnl|bosTau2|chr18 (46012893-46013082) | |
| 177-366, gnl|Hg17|chr19 (45170114-45170303) | |
| 177-366, gnl|Mm7|chr7 (24982879-24982690) | |
| 503-622, gnl|bosTau2|chr18 (46016757-46016876) | |
| 503-622, gnl|canFam2|chr1 (116462833-116462748) | |
| 503-622, gnl|danRer3|chr16 (38122689-38122774) | |
| 503-622, gnl|dasNov1|scaffold_94826 (297-212) | |
| 503-622, gnl|fr1|chrUn (137210695-137210756) | |
| 503-622, gnl|hg17|chr19 (45172256-45172341) | |
| 503-622, gnl|Hg17|chr19 (45172261-45172380) | |
| 503-622, gnl|loxAfr1|scaffold_5898 (56117-56032) | |
| 503-622, gnl|mm7|chr7 (24981315-24981230) | |
| 503-622, gnl|Mm7|chr7 (24981308-24981189) | |
| 503-622, gnl|monDom2|scaffold_139 (1260993-1261133) | |
| 503-622, gnl|oryCun1|scaffold_113476 (14130-14202) | |
| 503-622, gnl|panTro1|chr20 (42107330-42107415) | |
| 503-622, gnl|rheMac2|chr19 (46373085-46373170) | |
| 503-622, gnl|rn3|chr1 (83234687-83234602) | |
| 503-622, gnl|tetNig1|chrUn_random (119750256-119750200) | |
| 503-622, gnl|xenTro1|scaffold_1027 (111836-111919) | |
| 714-888, gnl|bosTau2|chr18 (46020476-46020650) | |
| 714-888, gnl|Hg17|chr19 (45177561-45177735) | |
| 714-888, gnl|Mm7|chr7 (24976995-24976821) | |
| 960-1130, gnl|bosTau2|chr18 (46020949-46021119) | |
| 960-1130, gnl|Hg17|chr19 (45178031-45178201) | |
| 960-1130, gnl|Mm7|chr7 (24976525-24976355) | |
| 1156-1417, gnl|bosTau2|chr18 (46021553-46021819) | |
| 1156-1417, gnl|Hg17|chr19 (45178618-45179184) | |
| 1156-1417, gnl|Mm7|chr7 (24975980-24975732) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| mas (0.42061) | |
| fbs (0.350693) | |
| cli (0.305623) | |
| cov (0.264306) | |
| eep (0.245128) | |
| cty (0.20816) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| ebs (0.118301) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.42061) | |
| fbs (0.350693) | |
| cli (0.305623) | |
| cov (0.264306) | |
| eep (0.245128) | |
| cty (0.20816) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| ebs (0.118301) |