Non-Coding RNA Search

Ss1.1-Ova1-OVR010009G07.5

Sequence:


               
               CTTCTCCAGGTCCCGCGAGAGGGAGACCCTGGCGCGTTCAGGTAACATGGCCTTGGGCCT
GATTGAAGTGGAACGAAAGTTCCTTCCCGGGCCCGGCATAGAGGAGCGGCTGCAGGAGTT
GGGAGGTATCCTGGAGCACCGAATCACCTTCCGAGACAGCTACTATGATACCCCTGAGCT
GAGCCTCATGCGGTCTGACCACTGGCTGCGACAGCGAGAGGGTAGTGGATGGCAGCTCAA
ATATGCTGGGGCAGCAAGTGTCTCAGAACCCTGCACTAAGTACACGGAGCTCACAGCTGA
GTCTGCAATTGTGGCCCAGCTCTGTGAGGTGCTGAGGGCTGAGGTCCCCAGGGCTGGGGG
TGTGGCTGCTGTGCTGGACCGTCTGGGGCTGCAGGAAATAGCAAGTTTTGTGACCCAGCG
CAGTGGCTGGAAACTGGTGCCGTCTGGAGCTGATGAAGAGGAGCCACCCCTCAGAGTGGA
CCTGGATACAGCTGACTTTGGCTACGCTGTGGGTGAGGTAGAGGCCCTGGTGCGTGAGGA
GGCTGAAGTCCCAGCTGCCCTAGAAAAGATCCACAGCGTCAGCAGCATGCTTGGTGTGCT
GGTGCGTGAGGAGGCACCTGCCAAGCTAATCGTGTACCTACAGTGCTTCCGGCCTCAAGA
CTATCAGCGCCTGCTAGAAGTGTACAGCTCCAAAAGGAAGCCAGAGGGGACTGAAGATCT
GGACGTGAGACTGGGCTAGGGTGTCCCCTCCTCTGTGGGGAAGAGCATCCTGGGTCTCCT
GAGATTCATTCTTGGCCTTGCCGTGCCTCTTCCTCCCTGGCCTCCCTTTGGAGGGAGTGA
CCCTCTCGGTTCTGCCTGTTCCTTCACCCTACCCTCAGCCATCCTTCCTGGAGCCCTCCT
TGGTTGCGTCCTCTCCCTCATCCGTCAGATGCAATCTGCGGGCCGCCCCTCTCCCCTGGC
CGCTAAGCAGCCTCCATTGATTTCCGCTCGTGTTTATAGGATTTCCACTTAGCCGTGATC
AGTAGTTAAGCACAGGAAAATCCCTTGCCACCCCCCTCCCTTGGTCGATGCCATTGATTC
TGCCAGCGGCTCCTAAACCGCCTTACAGCTGAGTTAGAGATGAGGGGAGGCAGCAGGGAT
TTCCCTGCCCTGGGGTATGGGGAATAGCAGCAGGTTGGGCAAACAGGCAGGAATCCCTGT
TAGGAATCGAGAAATTCTGGTTTGCTGTTGCCACTGTGTCCTGCTCTGGCCCAGAGGGCA
GCGTGCCTCCTGTGGAAGTTTAGGGGCACATCTGCTCCCCAGCCCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTCCAGGTCCCGCGAGAGGGAGACCCTGGCGCGTTCAGGTAACATGGCCTTGGGCCT
GATTGAAGTGGAACGAAAGTTCCTTCCCGGGCCCGGCATAGAGGAGCGGCTGCAGGAGTT
GGGAGGTATCCTGGAGCACCGAATCACCTTCCGAGACAGCTACTATGATACCCCTGAGCT
GAGCCTCATGCGGTCTGACCACTGGCTGCGACAGCGAGAGGGTAGTGGATGGCAGCTCAA
ATATGCTGGGGCAGCAAGTGTCTCAGAACCCTGCACTAAGTACACGGAGCTCACAGCTGA
GTCTGCAATTGTGGCCCAGCTCTGTGAGGTGCTGAGGGCTGAGGTCCCCAGGGCTGGGGG
TGTGGCTGCTGTGCTGGACCGTCTGGGGCTGCAGGAAATAGCAAGTTTTGTGACCCAGCG
CAGTGGCTGGAAACTGGTGCCGTCTGGAGCTGATGAAGAGGAGCCACCCCTCAGAGTGGA
CCTGGATACAGCTGACTTTGGCTACGCTGTGGGTGAGGTAGAGGCCCTGGTGCGTGAGGA
GGCTGAAGTCCCAGCTGCCCTAGAAAAGATCCACAGCGTCAGCAGCATGCTTGGTGTGCT
GGTGCGTGAGGAGGCACCTGCCAAGCTAATCGTGTACCTACAGTGCTTCCGGCCTCAAGA
CTATCAGCGCCTGCTAGAAGTGTACAGCTCCAAAAGGAAGCCAGAGGGGACTGAAGATCT
GGACGTGAGACTGGGCTAGGGTGTCCCCTCCTCTGTGGGGAAGAGCATCCTGGGTCTCCT
GAGATTCATTCTTGGCCTTGCCGTGCCTCTTCCTCCCTGGCCTCCCTTTGGAGGGAGTGA
CCCTCTCGGTTCTGCCTGTTCCTTCACCCTACCCTCAGCCATCCTTCCTGGAGCCCTCCT
TGGTTGCGTCCTCTCCCTCATCCGTCAGATGCAATCTGCGGGCCGCCCCTCTCCCCTGGC
CGCTAAGCAGCCTCCATTGATTTCCGCTCGTGTTTATAGGATTTCCACTTAGCCGTGATC
AGTAGTTAAGCACAGGAAAATCCCTTGCCACCCCCCTCCCTTGGTCGATGCCATTGATTC
TGCCAGCGGCTCCTAAACCGCCTTACAGCTGAGTTAGAGATGAGGGGAGGCAGCAGGGAT
TTCCCTGCCCTGGGGTATGGGGAATAGCAGCAGGTTGGGCAAACAGGCAGGAATCCCTGT
TAGGAATCGAGAAATTCTGGTTTGCTGTTGCCACTGTGTCCTGCTCTGGCCCAGAGGGCA
GCGTGCCTCCTGTGGAAGTTTAGGGGCACATCTGCTCCCCAGCCCTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6T250_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6T250_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               357-476, + strand, RNAz p=0.983156
               

               
               1050-1245, - strand, RNAz p=0.99845

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               357-476, + strand, RNAz p=0.983156
               

               
               1050-1245, - strand, RNAz p=0.99845

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               39-596, gnl|bosTau2|chr10 (13623357-13622800)
               

               
               39-596, gnl|Hg17|chr14 (23095799-23096356)
               

               
               39-596, gnl|Mm7|chr14 (49961899-49962457)
               


               
               782-1305, gnl|bosTau2|chr10 (13621548-13621022)
               

               
               782-1305, gnl|Hg17|chr14 (23097933-23098461)
               

               
               782-1305, gnl|Mm7|chr14 (49963994-49964495)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-596, gnl|bosTau2|chr10 (13623357-13622800)
               

               
               39-596, gnl|Hg17|chr14 (23095799-23096356)
               

               
               39-596, gnl|Mm7|chr14 (49961899-49962457)
               


               
               782-1305, gnl|bosTau2|chr10 (13621548-13621022)
               

               
               782-1305, gnl|Hg17|chr14 (23097933-23098461)
               

               
               782-1305, gnl|Mm7|chr14 (49963994-49964495)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.383362)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.383362)
               

               
               eep (0.122564)

	357-476, + strand, RNAz p=0.983156
	1050-1245, - strand, RNAz p=0.99845

	39-596, gnl\|bosTau2\|chr10 (13623357-13622800)
	39-596, gnl\|Hg17\|chr14 (23095799-23096356)
	39-596, gnl\|Mm7\|chr14 (49961899-49962457)

	782-1305, gnl\|bosTau2\|chr10 (13621548-13621022)
	782-1305, gnl\|Hg17\|chr14 (23097933-23098461)
	782-1305, gnl\|Mm7\|chr14 (49963994-49964495)