Ss1.1-Ova1-OVR010010D12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTAAAAGTCAGATGTGGTCTTTATTGTGATGGTGGCAG TTCCCTAGGATGAGCAGACGTGGGAGGCAGGAGCGGCAGGACTGGCCACTCCCAAGCCAC CCTCACTCCCTCCTGTCCGCAGCCAAAAAAAGAAGTCAGATGAGGCCTCATCCCCGGACT CTGGCCCAGGGAGGGGCTTAAGGGAAGAGGGTCAGGGTCAAAAGTCACACAAAGGCGTTC CCATTCTGGCAGAGCGGAAGCAAATCCAACTAGCATCCATGAGGACACAGGTTCGGTCCC AGGCCTTGCTCAGTGGATTAAGGATCTGGCGTGGTATAGGTTGCAGACGCGGCTGGGATC CCGAGTTGCTGGGGCTGTGGTGCAGGCCAGCAGCTGTAGCTCCAATCAGACCCCTCGCCT GAGAACCTCCATATGCTGTGGGTGTGGCCCTAAAAAGCAAAAAAGAAAAAAGTCACGTGG AGCCCAGTGACTGTCAAGGCAGCCTGATGGAAACAGGGCTGGGGCAGGGTGGGAGGCAGA GACGGGGCCCCAGGGCAGCCCCAGGTGGCTGGACACAGTGCAGAGGAACACCACCCGGGG TGCACAGCCCTCATCCCATGCAGAACCCTCGGCAGGGCAGCCTGGCTGGTAAAGGAAGGG GTGGGAGTGCCAGCCCTGCGGCTGACGCCAGCTCCAGGAATCCCCACCAAACCCCCTCCA AGAGTGCCTTCCTGCCCTTCCCCAACTCTGCAGGCAGAGGCCAGGAGAGCCTGGGGATTT GGTGCACATCAGTGGGGTCTAGGCTGTGCCAGGAGGGAAGGGCATGGGCCAAGGGCGGCC ACAGGGGGCATGGCTGCAGCCCTGGCAGAGTCCCAAGGAGCCCACTCTTGGGCGTGAGGA GAGGGGTCTGGAAGCAGCCTCCTTCGGCACGAGTCCGAGCCAAATTCCAGGACAGCGGGA CCAGCCGCTGGAAGCGGGGCCAGGCATGGGGTCAGGAGTCCTCTGAGGTGGACAGACAGG AGTTGGCAGAGCTGCTGGCCCAGCCAGGAGCCCAGGATCACCTTATCTGCAGTGCTCCTT CCTGAATTCTTTGTCCAAGTCGATGTTCTTGGGGGGTGGGGGGCTGTGGACCAGCTCGGC CCTCTCCTTGAGGATGTTGTTTTTGTAATCGAGTTGGATGTTCTCACTCCTGTAAAGAGC CTGATCCCCTGTGGCCACAGCAAATTCCACCACGTTCACGTCCTTCCCCTTTGACTTGGA CTTCTTGTCGGAGTATTCATAGCCTCCGCGGCGGCGCTGTCGGGTGGCCAGGACCACAGT GATGAGCAGCAGAATGAAGAGCAGCAGGGTGGCCAGTACGTAGCCCAGCTGCTGGAAGAA GTGTGCCCGGCCCTCGGGGACGATGACGTTGATGACGCTGCGGCCGCGTGCCAACGTGGG GTCTGGGCCGGGCGCGCCGCCGTGGCTGGAGCCGTTGCCCGGCGAGTCCCGCGGGGGCGG CTCGGCGGCGGGCTCGGTAACTCTCAGGTGGAAGATGCGGCGCTCGTGCAGGCCGCAGTA GTGGTGGTGCAGGTGGCAGGAGTAGGTGCCTTCGTCTGCGGGCTCCAGAGGGTCGATGCG CAGCGAGAAGTCGCCGCGCGCGAAGGCGTCCGCCCCGACTGCCACGCGGTCGCGCAGGAA GGGCGGCCCGTAGGCGCGGCGCTCACCCGACGCGTACAGGTCGAGCAGGCGGTCGGCGCG GTCGTGTGGCACCCCGGGCGGCTGCCGGTCCCAGTGCACCACCTGCTGCGCCTCCTCCAG GTGCCGGTCGGTCCACACGTGCGCGCGGTTCACGCAGGTCAGCAGCGCGGGCGCGCCGCG CTCCACTACCAGCACCTCCTTCTCGCCCGTCCAGTGCGCGCCGGCGGCCTGGGCGTTGTC GGTGACCAGGAGTTGCACGGCCAGGCTCTCGTAGAGGTGACAGTAATGGTGATGCAGGTT GCAGGTGTACAGCCCCTCGTCTGTCTCCTCCACCGCGCGGATGAGCAGCGAGAAGTTGCC GTCGTGGAAGGCGGAGGGAGGCAGCTGCAAGCGCCCGCGGTCGCGCAGCTTGTACACGCG CTGCTCGCCCGCCGAGTACATGTCCACGAGTCGGTGCGCGGGGCCGCCGGCCGGGCCGCC GCTGAGGTCCCAGTGGACCACACGCTGGCGGTCGTGCAGCCGGTCTTGGGTCCACACCAT GCGCGGGCTCTGGCAGCGCAGCACGGCGCGGGCTCCCGCTGCCCAGCTCACTGCGGACTC AGACACCACCGAGCTGTCCGGCCCAGACAGGCCTGAGGACAGAAGGACAGCAAAGCTCTG CAGAAGCACAAGTTGCCAGAGAATGACCGGGGACCGCAGCTCCATGGCGCCTGCCTGGCC CGCCAGCTGCTTTGTCTCCCGAGCTCTAACTCTCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTAAAAGTCAGATGTGGTCTTTATTGTGATGGTGGCAG TTCCCTAGGATGAGCAGACGTGGGAGGCAGGAGCGGCAGGACTGGCCACTCCCAAGCCAC CCTCACTCCCTCCTGTCCGCAGCCAAAAAAAGAAGTCAGATGAGGCCTCATCCCCGGACT CTGGCCCAGGGAGGGGCTTAAGGGAAGAGGGTCAGGGTCAAAAGTCACACAAAGGCGTTC CCATTCTGGCAGAGCGGAAGCAAATCCAACTAGCATCCATGAGGACACAGGTTCGGTCCC AGGCCTTGCTCAGTGGATTAAGGATCTGGCGTGGTATAGGTTGCAGACGCGGCTGGGATC CCGAGTTGCTGGGGCTGTGGTGCAGGCCAGCAGCTGTAGCTCCAATCAGACCCCTCGCCT GAGAACCTCCATATGCTGTGGGTGTGGCCCTAAAAAGCAAAAAAGAAAAAAGTCACGTGG AGCCCAGTGACTGTCAAGGCAGCCTGATGGAAACAGGGCTGGGGCAGGGTGGGAGGCAGA GACGGGGCCCCAGGGCAGCCCCAGGTGGCTGGACACAGTGCAGAGGAACACCACCCGGGG TGCACAGCCCTCATCCCATGCAGAACCCTCGGCAGGGCAGCCTGGCTGGTAAAGGAAGGG GTGGGAGTGCCAGCCCTGCGGCTGACGCCAGCTCCAGGAATCCCCACCAAACCCCCTCCA AGAGTGCCTTCCTGCCCTTCCCCAACTCTGCAGGCAGAGGCCAGGAGAGCCTGGGGATTT GGTGCACATCAGTGGGGTCTAGGCTGTGCCAGGAGGGAAGGGCATGGGCCAAGGGCGGCC ACAGGGGGCATGGCTGCAGCCCTGGCAGAGTCCCAAGGAGCCCACTCTTGGGCGTGAGGA GAGGGGTCTGGAAGCAGCCTCCTTCGGCACGAGTCCGAGCCAAATTCCAGGACAGCGGGA CCAGCCGCTGGAAGCGGGGCCAGGCATGGGGTCAGGAGTCCTCTGAGGTGGACAGACAGG AGTTGGCAGAGCTGCTGGCCCAGCCAGGAGCCCAGGATCACCTTATCTGCAGTGCTCCTT CCTGAATTCTTTGTCCAAGTCGATGTTCTTGGGGGGTGGGGGGCTGTGGACCAGCTCGGC CCTCTCCTTGAGGATGTTGTTTTTGTAATCGAGTTGGATGTTCTCACTCCTGTAAAGAGC CTGATCCCCTGTGGCCACAGCAAATTCCACCACGTTCACGTCCTTCCCCTTTGACTTGGA CTTCTTGTCGGAGTATTCATAGCCTCCGCGGCGGCGCTGTCGGGTGGCCAGGACCACAGT GATGAGCAGCAGAATGAAGAGCAGCAGGGTGGCCAGTACGTAGCCCAGCTGCTGGAAGAA GTGTGCCCGGCCCTCGGGGACGATGACGTTGATGACGCTGCGGCCGCGTGCCAACGTGGG GTCTGGGCCGGGCGCGCCGCCGTGGCTGGAGCCGTTGCCCGGCGAGTCCCGCGGGGGCGG CTCGGCGGCGGGCTCGGTAACTCTCAGGTGGAAGATGCGGCGCTCGTGCAGGCCGCAGTA GTGGTGGTGCAGGTGGCAGGAGTAGGTGCCTTCGTCTGCGGGCTCCAGAGGGTCGATGCG CAGCGAGAAGTCGCCGCGCGCGAAGGCGTCCGCCCCGACTGCCACGCGGTCGCGCAGGAA GGGCGGCCCGTAGGCGCGGCGCTCACCCGACGCGTACAGGTCGAGCAGGCGGTCGGCGCG GTCGTGTGGCACCCCGGGCGGCTGCCGGTCCCAGTGCACCACCTGCTGCGCCTCCTCCAG GTGCCGGTCGGTCCACACGTGCGCGCGGTTCACGCAGGTCAGCAGCGCGGGCGCGCCGCG CTCCACTACCAGCACCTCCTTCTCGCCCGTCCAGTGCGCGCCGGCGGCCTGGGCGTTGTC GGTGACCAGGAGTTGCACGGCCAGGCTCTCGTAGAGGTGACAGTAATGGTGATGCAGGTT GCAGGTGTACAGCCCCTCGTCTGTCTCCTCCACCGCGCGGATGAGCAGCGAGAAGTTGCC GTCGTGGAAGGCGGAGGGAGGCAGCTGCAAGCGCCCGCGGTCGCGCAGCTTGTACACGCG CTGCTCGCCCGCCGAGTACATGTCCACGAGTCGGTGCGCGGGGCCGCCGGCCGGGCCGCC GCTGAGGTCCCAGTGGACCACACGCTGGCGGTCGTGCAGCCGGTCTTGGGTCCACACCAT GCGCGGGCTCTGGCAGCGCAGCACGGCGCGGGCTCCCGCTGCCCAGCTCACTGCGGACTC AGACACCACCGAGCTGTCCGGCCCAGACAGGCCTGAGGACAGAAGGACAGCAAAGCTCTG CAGAAGCACAAGTTGCCAGAGAATGACCGGGGACCGCAGCTCCATGGCGCCTGCCTGGCC CGCCAGCTGCTTTGTCTCCCGAGCTCTAACTCTCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 103-229, + strand, RNAz p=0.997758 | |
| 670-826, - strand, RNAz p=0.998178 | |
| 976-1090, - strand, RNAz p=0.996963 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 103-229, + strand, RNAz p=0.997758 | |
| 670-826, - strand, RNAz p=0.998178 | |
| 976-1090, - strand, RNAz p=0.996963 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_032348, - | |
| 5' of NM_032348, - |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 26-229, gnl|bosTau2|chr16 (37896213-37896011) | |
| 26-229, gnl|Hg17|chr1 (1327996-1328200) | |
| 26-229, gnl|Mm7|chr4 (154833635-154833450) | |
| 664-1090, gnl|bosTau2|chr16 (37895800-37895353) | |
| 664-1090, gnl|Hg17|chr1 (1328417-1328934) | |
| 1443-1914, gnl|bosTau2|chr16 (37894277-37893800) | |
| 1443-1914, gnl|Hg17|chr1 (1329985-1330456) | |
| 1443-1914, gnl|Mm7|chr4 (154831674-154831203) | |
| 1915-2016, gnl|bosTau2|chr16 (37893689-37893588) | |
| 1915-2016, gnl|canFam2|chr5 (59525850-59525960) | |
| 1915-2016, gnl|danRer3|chr11 (24584409-24584507) | |
| 1915-2016, gnl|echTel1|scaffold_105728 (735-624) | |
| 1915-2016, gnl|fr1|chrUn (41556897-41557005) | |
| 1915-2016, gnl|galGal2|chr21 (2153590-2153480) | |
| 1915-2016, gnl|hg17|chr1 (1330541-1330651) | |
| 1915-2016, gnl|Hg17|chr1 (1330548-1330649) | |
| 1915-2016, gnl|mm7|chr4 (154831096-154830986) | |
| 1915-2016, gnl|Mm7|chr4 (154831087-154830986) | |
| 1915-2016, gnl|monDom2|scaffold_196 (127728-127838) | |
| 1915-2016, gnl|panTro1|chr1 (1219494-1219604) | |
| 1915-2016, gnl|rheMac2|chr1 (4426686-4426796) | |
| 1915-2016, gnl|rn3|chr5 (172710509-172710399) | |
| 1915-2016, gnl|tetNig1|chr9 (8541856-8541954) | |
| 1915-2016, gnl|xenTro1|scaffold_414 (341106-341010) | |
| 2083-2298, gnl|bosTau2|chr16 (37893374-37893159) | |
| 2083-2298, gnl|Hg17|chr1 (1330832-1331032) | |
| 2083-2298, gnl|Mm7|chr4 (154830671-154830471) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 26-229, gnl|bosTau2|chr16 (37896213-37896011) | |
| 26-229, gnl|Hg17|chr1 (1327996-1328200) | |
| 26-229, gnl|Mm7|chr4 (154833635-154833450) | |
| 664-1090, gnl|bosTau2|chr16 (37895800-37895353) | |
| 664-1090, gnl|Hg17|chr1 (1328417-1328934) | |
| 1443-1914, gnl|bosTau2|chr16 (37894277-37893800) | |
| 1443-1914, gnl|Hg17|chr1 (1329985-1330456) | |
| 1443-1914, gnl|Mm7|chr4 (154831674-154831203) | |
| 1915-2016, gnl|bosTau2|chr16 (37893689-37893588) | |
| 1915-2016, gnl|canFam2|chr5 (59525850-59525960) | |
| 1915-2016, gnl|danRer3|chr11 (24584409-24584507) | |
| 1915-2016, gnl|echTel1|scaffold_105728 (735-624) | |
| 1915-2016, gnl|fr1|chrUn (41556897-41557005) | |
| 1915-2016, gnl|galGal2|chr21 (2153590-2153480) | |
| 1915-2016, gnl|hg17|chr1 (1330541-1330651) | |
| 1915-2016, gnl|Hg17|chr1 (1330548-1330649) | |
| 1915-2016, gnl|mm7|chr4 (154831096-154830986) | |
| 1915-2016, gnl|Mm7|chr4 (154831087-154830986) | |
| 1915-2016, gnl|monDom2|scaffold_196 (127728-127838) | |
| 1915-2016, gnl|panTro1|chr1 (1219494-1219604) | |
| 1915-2016, gnl|rheMac2|chr1 (4426686-4426796) | |
| 1915-2016, gnl|rn3|chr5 (172710509-172710399) | |
| 1915-2016, gnl|tetNig1|chr9 (8541856-8541954) | |
| 1915-2016, gnl|xenTro1|scaffold_414 (341106-341010) | |
| 2083-2298, gnl|bosTau2|chr16 (37893374-37893159) | |
| 2083-2298, gnl|Hg17|chr1 (1330832-1331032) | |
| 2083-2298, gnl|Mm7|chr4 (154830671-154830471) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| pty (0.285429) | |
| ute (0.265569) | |
| med (0.232504) | |
| jca (0.22792) | |
| cty (0.20816) | |
| nbm (0.198649) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| eru (0.120048) | |
| clu (0.119646) | |
| jej (0.0989218) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.285429) | |
| ute (0.265569) | |
| med (0.232504) | |
| jca (0.22792) | |
| cty (0.20816) | |
| nbm (0.198649) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| eru (0.120048) | |
| clu (0.119646) | |
| jej (0.0989218) |