Non-Coding RNA Search

Ss1.1-Ova1-OVR010010F07.5

Sequence:


               
               ATTCCCGTCCCGGCTCCTCCCGCTTGCCGCCGCAGTGACAGGGAAGCCGGGCCCGGTGGC
AGAGAGGAAGTGCGGGGCCGCCGCGCCGAGCCCGTCCCCGCCGAGGCCGGCTCCCCCAGG
CGGCTCGGGTGACAGTGTCGCGGCCGCCGGGCGCAGCGCGGGGCACGCGCCGGGCAGAGC
CAAGGGCCAGGCGGACGCTTCAGCAGAGACGCGGGGAAAATGGCTGATGACTTTGGCTTC
TTCTCGTCATCGGAGAGCGGGGCCCCTGAGGTTGCCGAGGAGGACCCGGCGGCTGCCTTC
CTGGCCCAGCAGGAGAGTGAAATCGCGGGCATAGAGAATGACGAGGGCTTCGGGGCACCT
GCCGGCAGCCAGGCGGCCCTCGCGCAGCCGGGACCAGCGAGTGGGGCAGGTCCTGAGGAC
ATGGGGACCACAGTCAATGGAGATGTGTTTCAGGATGCTAACGGTCCAGCTGATGGCTAC
GCTGCCATTGCCCAGGCGGACAGACTGACTCAGGAACCCGAGAGCATCCGCAAGTGGAGA
GAGGAGCAGCGGAAACGGCTGCAAGAGCTGGATGCTGCCTCCAAAGTGACGGAACAAGAG
TGGCGGGAGAAGGCCAAGAAGGACTTGGAGGAATGGAACCAGCGCCAGAGTGAGCAAGTT
GAGAAGAACAAGATCAATAACCGGGCATCCGAGGAGGCTTTTGTGAAGGAATCCAAGGAG
GAGACCCCAGGTACAGAGTGGGAGAAGGTGGCCCAGCTGTGTGACTTCAACCCCAAGAGC
AGCAAGCAATGCAAAGACGTGTCCCGCCTGCGCTCGGTGCTCATGTCCCTGAAGCAGACA
CCACTGTCCCGCTAGGAGCCTGTCACCAGCATGGCCGCCAAGCGGGGGCAGGGCCGGGCA
GAGTAGGAGCAGCTGCTTCGGCCAGGGTGGGGAAAACGCCTCCTGTGGCTGCTACACAGC
CTATCCCGTTCCTCCCCATCTCCCAGGGCTGGGAAGAGGGACGTTCACCCCTCTCGCCCA
TCACTCCCTCACAGCCCTATGGCCCAGCCCCTCACATGTCCTCTCAGTCCACAAAATTGA
CTGTCCCTCCTGATGTATTTTTTTTTTTCTTGGCTTAAAGGGTGTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCCCGTCCCGGCTCCTCCCGCTTGCCGCCGCAGTGACAGGGAAGCCGGGCCCGGTGGC
AGAGAGGAAGTGCGGGGCCGCCGCGCCGAGCCCGTCCCCGCCGAGGCCGGCTCCCCCAGG
CGGCTCGGGTGACAGTGTCGCGGCCGCCGGGCGCAGCGCGGGGCACGCGCCGGGCAGAGC
CAAGGGCCAGGCGGACGCTTCAGCAGAGACGCGGGGAAAATGGCTGATGACTTTGGCTTC
TTCTCGTCATCGGAGAGCGGGGCCCCTGAGGTTGCCGAGGAGGACCCGGCGGCTGCCTTC
CTGGCCCAGCAGGAGAGTGAAATCGCGGGCATAGAGAATGACGAGGGCTTCGGGGCACCT
GCCGGCAGCCAGGCGGCCCTCGCGCAGCCGGGACCAGCGAGTGGGGCAGGTCCTGAGGAC
ATGGGGACCACAGTCAATGGAGATGTGTTTCAGGATGCTAACGGTCCAGCTGATGGCTAC
GCTGCCATTGCCCAGGCGGACAGACTGACTCAGGAACCCGAGAGCATCCGCAAGTGGAGA
GAGGAGCAGCGGAAACGGCTGCAAGAGCTGGATGCTGCCTCCAAAGTGACGGAACAAGAG
TGGCGGGAGAAGGCCAAGAAGGACTTGGAGGAATGGAACCAGCGCCAGAGTGAGCAAGTT
GAGAAGAACAAGATCAATAACCGGGCATCCGAGGAGGCTTTTGTGAAGGAATCCAAGGAG
GAGACCCCAGGTACAGAGTGGGAGAAGGTGGCCCAGCTGTGTGACTTCAACCCCAAGAGC
AGCAAGCAATGCAAAGACGTGTCCCGCCTGCGCTCGGTGCTCATGTCCCTGAAGCAGACA
CCACTGTCCCGCTAGGAGCCTGTCACCAGCATGGCCGCCAAGCGGGGGCAGGGCCGGGCA
GAGTAGGAGCAGCTGCTTCGGCCAGGGTGGGGAAAACGCCTCCTGTGGCTGCTACACAGC
CTATCCCGTTCCTCCCCATCTCCCAGGGCTGGGAAGAGGGACGTTCACCCCTCTCGCCCA
TCACTCCCTCACAGCCCTATGGCCCAGCCCCTCACATGTCCTCTCAGTCCACAAAATTGA
CTGTCCCTCCTGATGTATTTTTTTTTTTCTTGGCTTAAAGGGTGTGTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q53Y37_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53Y37_HUMAN

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-406, gnl|bosTau2|chr7 (26007202-26006792)
               

               
               1-406, gnl|Hg17|chr5 (175776185-175775784)
               


               
               451-860, gnl|bosTau2|chr10 (879684-879271)
               

               
               451-860, gnl|Hg17|chr12 (7650799-7651205)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-406, gnl|bosTau2|chr7 (26007202-26006792)
               

               
               1-406, gnl|Hg17|chr5 (175776185-175775784)
               


               
               451-860, gnl|bosTau2|chr10 (879684-879271)
               

               
               451-860, gnl|Hg17|chr12 (7650799-7651205)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               fhi (0.508733)
               

               
               hyp (0.42851)
               

               
               hlv (0.417769)
               

               
               fcc (0.39557)
               

               
               col (0.390016)
               

               
               ill (0.351185)
               

               
               nje (0.33184)
               

               
               nco (0.323468)
               

               
               cly (0.241284)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               tbr (0.154178)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.508733)
               

               
               hyp (0.42851)
               

               
               hlv (0.417769)
               

               
               fcc (0.39557)
               

               
               col (0.390016)
               

               
               ill (0.351185)
               

               
               nje (0.33184)
               

               
               nco (0.323468)
               

               
               cly (0.241284)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               tbr (0.154178)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	1-406, gnl\|bosTau2\|chr7 (26007202-26006792)
	1-406, gnl\|Hg17\|chr5 (175776185-175775784)

	451-860, gnl\|bosTau2\|chr10 (879684-879271)
	451-860, gnl\|Hg17\|chr12 (7650799-7651205)

	fhi (0.508733)
	hyp (0.42851)
	hlv (0.417769)
	fcc (0.39557)
	col (0.390016)
	ill (0.351185)
	nje (0.33184)
	nco (0.323468)
	cly (0.241284)
	ecc (0.23007)
	ece (0.229305)
	mas (0.210305)
	hea (0.204499)
	ton (0.1755)
	duo (0.172801)
	tbr (0.154178)
	pla (0.133672)
	cov (0.132153)
	eep (0.122564)
	ebs (0.118301)
	jca (0.11396)