Ss1.1-Ova1-OVR010010F12.5
|
CCCTGGGCGCAGTGAGCCAGTGGCGGGGGAAGGCACCGGTGGGGCCGACGGGCGGGTTGA
AGGAGGGAAGCGGGCGAGCGAAGTCCCAGTGCGCGCCGCGGCGGCACGGGTACCCTCCCC
TTCCGGGCGTGAGGCGCTGTGAGGAAAGCTGAAGCGAGCGGACTCACACCGGCAGCGAGG
CGCCGCTACCGCCGCCCCAGCCCAGCCTCCCTCGGCTTCGGCGCTCCCGTCGTGGGGGTC
CGGGTTCCTCAGCACACCCAGCTCCAGCAGCCCCAGAGCCTGTCCCTAGTCCTTCGAAAG
CCCCGGCGCCAGTCCGGGCCCTTGGCGGGGAGGATGACGGAGCTGCAGTCGGCACTGCTA
CTGCGAAGACAGCTGGCAGAACTCAACAAAAATCCAGTGGAAGGCTTTTCAGCAGGTTTA
ATAGATGACAATGATCTCTACCGATGGGAAGTCCTTATTATTGGTCCTCCAGATACACTT
TATGAAGGTGGTGTTTTTAAGGCTCATCTCACTTTCCCAAAAGATTATCCTCTTCGGCCT
CCTAAAATGAAATTCATTACAGAAATCTGGCATCCAAATGTTGATAAAAATGGTGATGTG
TGCATTTCTATTCTTCATGAGCCCGGAGAAGATAAATATGGTTATGAAAAGCCAGAGGAA
CGCTGGCTGCCTATTCACACCGTGGAAACCATCATGATTAGTGTCATTTCTATGCTGGCA
GACCCTAATGGCGACTCGCCTGCTAATGTGGACGCTGCGAAAGAATGGAGAGAAGACAGA
AATGGAGAATTCAAAAGGAAAGTCGCCCGCTGTGTAAGAAAAAGCCAAGAGACTGCTTTT
GAGTGACATTTATTCAACAGCTGTAACTTCACTTATTTCAGGGTCTCCAATGAGAAACAT
GGCACTGTTTTTCCTGCACTCTACCCACCTATTGCTGGACTTCTGATGTAACAAGTTGGC
AAACACTGGCTGGAACTGGGCTGCAATAAAACATGCCAGTATCAATGCTGACAAGAGCCT
AACAAGTGCCAACTTACAGATGATTACGCATTTTGAATTCTAATGAACTGTTTTAACCTT
CAGGAAGAATTGTAAAGACCTGTACATAGCACAACATGATCCGGATAATATATATACTGT
TCATGTACATCCACAAATACACCTTGTACCAAATAATGCTTTCTTGTAGTAGAATAAGAA
TCGTGTAAATTCTCAAAGATTTTAGCAGGTTTTCTTTCCCTATTCATTGTTTCTTATCAG
TTTAAAAAAAAAAAAAAAACTCCTTAAAGCATGTCAGATGAAGAGCAATTAGGATTAAAA
GTATCCATTTAATTTCCTTTAAACCATTGAGGCTTCATTAAACTCTTTTCACTTACTAAA
CTTTTGTATCTTCTTTGTTTTGACACACTCCCCTTTGCTTTTATCTCTTCTCTCTGCCAG
GAAGTTTTCAAGTCAGTTCAAATACTGAACTACTCAATAAGCAACTACTTGATTTTTACT
GATGACTTCAGGGGAATGGTCATCACTAGGTGCTTTGTCCCTTTTGTATTACACTCGCAC
CCATCTCTTGGATTGGATGTAGCAATAACATTTTTTGTTGTTGAGAGCTCTTGAATTTAG
TCATTATCCCCAAGAACTAAAAGGAGTTGGTTCTGAATTCAATTCAGATTTCAAATGACC
GAAATTTATCCCGAACAATGCAAAATCCAGGTTTTATTTTTGCCCTTCAGTTGTCTAATG
TGAAGGTTGGATGAATATAGCATGCACAGCTACAGGCTTTCTATTTAGCTTCTGGGTTTG
CTATTAAAAATGCTGTTTACCCTCATTCCCTTCTCCTCAGCCCTTCATATTTCTTTGCCT
CTCTTCTTCTATACTGCAGATTTTTTCCCACCTATTGTACAAAGAAATTGCGATGTATAT
TTTCATGTAATTTGATTTTGGAATTCTGTCACCTTATGTAGTGAGTTCTTCCAAAATATA
ATTTTTTTCCAATAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCCTGGGCGCAGTGAGCCAGTGGCGGGGGAAGGCACCGGTGGGGCCGACGGGCGGGTTGA
AGGAGGGAAGCGGGCGAGCGAAGTCCCAGTGCGCGCCGCGGCGGCACGGGTACCCTCCCC
TTCCGGGCGTGAGGCGCTGTGAGGAAAGCTGAAGCGAGCGGACTCACACCGGCAGCGAGG
CGCCGCTACCGCCGCCCCAGCCCAGCCTCCCTCGGCTTCGGCGCTCCCGTCGTGGGGGTC
CGGGTTCCTCAGCACACCCAGCTCCAGCAGCCCCAGAGCCTGTCCCTAGTCCTTCGAAAG
CCCCGGCGCCAGTCCGGGCCCTTGGCGGGGAGGATGACGGAGCTGCAGTCGGCACTGCTA
CTGCGAAGACAGCTGGCAGAACTCAACAAAAATCCAGTGGAAGGCTTTTCAGCAGGTTTA
ATAGATGACAATGATCTCTACCGATGGGAAGTCCTTATTATTGGTCCTCCAGATACACTT
TATGAAGGTGGTGTTTTTAAGGCTCATCTCACTTTCCCAAAAGATTATCCTCTTCGGCCT
CCTAAAATGAAATTCATTACAGAAATCTGGCATCCAAATGTTGATAAAAATGGTGATGTG
TGCATTTCTATTCTTCATGAGCCCGGAGAAGATAAATATGGTTATGAAAAGCCAGAGGAA
CGCTGGCTGCCTATTCACACCGTGGAAACCATCATGATTAGTGTCATTTCTATGCTGGCA
GACCCTAATGGCGACTCGCCTGCTAATGTGGACGCTGCGAAAGAATGGAGAGAAGACAGA
AATGGAGAATTCAAAAGGAAAGTCGCCCGCTGTGTAAGAAAAAGCCAAGAGACTGCTTTT
GAGTGACATTTATTCAACAGCTGTAACTTCACTTATTTCAGGGTCTCCAATGAGAAACAT
GGCACTGTTTTTCCTGCACTCTACCCACCTATTGCTGGACTTCTGATGTAACAAGTTGGC
AAACACTGGCTGGAACTGGGCTGCAATAAAACATGCCAGTATCAATGCTGACAAGAGCCT
AACAAGTGCCAACTTACAGATGATTACGCATTTTGAATTCTAATGAACTGTTTTAACCTT
CAGGAAGAATTGTAAAGACCTGTACATAGCACAACATGATCCGGATAATATATATACTGT
TCATGTACATCCACAAATACACCTTGTACCAAATAATGCTTTCTTGTAGTAGAATAAGAA
TCGTGTAAATTCTCAAAGATTTTAGCAGGTTTTCTTTCCCTATTCATTGTTTCTTATCAG
TTTAAAAAAAAAAAAAAAACTCCTTAAAGCATGTCAGATGAAGAGCAATTAGGATTAAAA
GTATCCATTTAATTTCCTTTAAACCATTGAGGCTTCATTAAACTCTTTTCACTTACTAAA
CTTTTGTATCTTCTTTGTTTTGACACACTCCCCTTTGCTTTTATCTCTTCTCTCTGCCAG
GAAGTTTTCAAGTCAGTTCAAATACTGAACTACTCAATAAGCAACTACTTGATTTTTACT
GATGACTTCAGGGGAATGGTCATCACTAGGTGCTTTGTCCCTTTTGTATTACACTCGCAC
CCATCTCTTGGATTGGATGTAGCAATAACATTTTTTGTTGTTGAGAGCTCTTGAATTTAG
TCATTATCCCCAAGAACTAAAAGGAGTTGGTTCTGAATTCAATTCAGATTTCAAATGACC
GAAATTTATCCCGAACAATGCAAAATCCAGGTTTTATTTTTGCCCTTCAGTTGTCTAATG
TGAAGGTTGGATGAATATAGCATGCACAGCTACAGGCTTTCTATTTAGCTTCTGGGTTTG
CTATTAAAAATGCTGTTTACCCTCATTCCCTTCTCCTCAGCCCTTCATATTTCTTTGCCT
CTCTTCTTCTATACTGCAGATTTTTTCCCACCTATTGTACAAAGAAATTGCGATGTATAT
TTTCATGTAATTTGATTTTGGAATTCTGTCACCTTATGTAGTGAGTTCTTCCAAAATATA
ATTTTTTTCCAATAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-379, gnl|bosTau2|chr19 (19452045-19451667) |
|
1-379, gnl|Hg17|chr17 (4216693-4216315) |
|
1-379, gnl|Mm7|chr11 (72688836-72689209) |
| |
|
580-758, gnl|bosTau2|chr19 (19380081-19379903) |
|
580-758, gnl|Hg17|chr17 (4139453-4139275) |
|
580-758, gnl|Mm7|chr11 (72759278-72759456) |
| |
|
759-884, gnl|bosTau2|chr19 (19377164-19377039) |
|
759-884, gnl|Hg17|chr17 (4132966-4132840) |
|
759-884, gnl|Mm7|chr11 (72760942-72761068) |
| |
|
1329-1497, gnl|bosTau2|chr7 (21891382-21891550) |
|
1329-1497, gnl|Hg17|chr17 (4122111-4121953) |
|
1329-1497, gnl|Mm7|chr11 (72765546-72765705) |
| |
|
1557-1675, gnl|bosTau2|chr22 (28532407-28532288) |
|
1557-1675, gnl|Hg17|chr17 (4121896-4121781) |
|
1557-1675, gnl|Mm7|chr11 (72765766-72765866) |
| |
|
1710-2002, gnl|bosTau2|chr22 (28532209-28531923) |
|
1710-2002, gnl|Hg17|chr17 (4121757-4121477) |
|
1710-2002, gnl|Mm7|chr11 (72765925-72766184) |
| |
|
1744-1995, gnl|bosTau2|chr11 (32949437-32949189) |
|
1744-1995, gnl|Hg17|chr17 (4121725-4121475) |
|
1744-1995, gnl|Mm7|chr11 (72765954-72766186) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-379, gnl|bosTau2|chr19 (19452045-19451667) |
|
1-379, gnl|Hg17|chr17 (4216693-4216315) |
|
1-379, gnl|Mm7|chr11 (72688836-72689209) |
| |
|
580-758, gnl|bosTau2|chr19 (19380081-19379903) |
|
580-758, gnl|Hg17|chr17 (4139453-4139275) |
|
580-758, gnl|Mm7|chr11 (72759278-72759456) |
| |
|
759-884, gnl|bosTau2|chr19 (19377164-19377039) |
|
759-884, gnl|Hg17|chr17 (4132966-4132840) |
|
759-884, gnl|Mm7|chr11 (72760942-72761068) |
| |
|
1329-1497, gnl|bosTau2|chr7 (21891382-21891550) |
|
1329-1497, gnl|Hg17|chr17 (4122111-4121953) |
|
1329-1497, gnl|Mm7|chr11 (72765546-72765705) |
| |
|
1557-1675, gnl|bosTau2|chr22 (28532407-28532288) |
|
1557-1675, gnl|Hg17|chr17 (4121896-4121781) |
|
1557-1675, gnl|Mm7|chr11 (72765766-72765866) |
| |
|
1710-2002, gnl|bosTau2|chr22 (28532209-28531923) |
|
1710-2002, gnl|Hg17|chr17 (4121757-4121477) |
|
1710-2002, gnl|Mm7|chr11 (72765925-72766184) |
| |
|
1744-1995, gnl|bosTau2|chr11 (32949437-32949189) |
|
1744-1995, gnl|Hg17|chr17 (4121725-4121475) |
|
1744-1995, gnl|Mm7|chr11 (72765954-72766186) |
|
isp (1.95489) |
|
tbr (1.3876) |
|
vin (0.997672) |
|
ste (0.946458) |
|
sme (0.91631) |
|
bfe (0.749288) |
|
ldo (0.679018) |
|
ssp (0.677599) |
|
liv (0.585137) |
|
pro (0.512033) |
|
fco (0.471624) |
|
cbl (0.45919) |
|
spl (0.429553) |
|
sug (0.381874) |
|
sag (0.36543) |
|
gul (0.355177) |
|
duo (0.345602) |
|
ecc (0.345105) |
|
nje (0.33184) |
|
nco (0.323468) |
|
ctl (0.306138) |
|
lun (0.300978) |
|
lnt (0.284616) |
|
bla (0.248694) |
|
clu (0.239292) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
med (0.232504) |
|
mgp (0.230681) |
|
spc (0.226732) |
|
nms (0.213858) |
|
cty (0.20816) |
|
hea (0.204499) |
|
eje (0.197668) |
|
col (0.195008) |
|
nep (0.183925) |
|
sin (0.174948) |
|
rec (0.17307) |
|
mga (0.160205) |
|
ski (0.146735) |
|
lin (0.145603) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
cov (0.132153) |
|
thg (0.126791) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
isp (1.95489) |
|
tbr (1.3876) |
|
vin (0.997672) |
|
ste (0.946458) |
|
sme (0.91631) |
|
bfe (0.749288) |
|
ldo (0.679018) |
|
ssp (0.677599) |
|
liv (0.585137) |
|
pro (0.512033) |
|
fco (0.471624) |
|
cbl (0.45919) |
|
spl (0.429553) |
|
sug (0.381874) |
|
sag (0.36543) |
|
gul (0.355177) |
|
duo (0.345602) |
|
ecc (0.345105) |
|
nje (0.33184) |
|
nco (0.323468) |
|
ctl (0.306138) |
|
lun (0.300978) |
|
lnt (0.284616) |
|
bla (0.248694) |
|
clu (0.239292) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
med (0.232504) |
|
mgp (0.230681) |
|
spc (0.226732) |
|
nms (0.213858) |
|
cty (0.20816) |
|
hea (0.204499) |
|
eje (0.197668) |
|
col (0.195008) |
|
nep (0.183925) |
|
sin (0.174948) |
|
rec (0.17307) |
|
mga (0.160205) |
|
ski (0.146735) |
|
lin (0.145603) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
cov (0.132153) |
|
thg (0.126791) |
|
ebs (0.118301) |
|
jca (0.11396) |
