Non-Coding RNA Search

Ss1.1-Ova1-OVR010010H01.5

Sequence:


               
               AGATTTCCATCATGGCGGCTTCCATTTCGGGCTACACCTTCAGCGCTGTGTGTTTCCACA
GCGCCAACAGCAACGCCGACCACGAAGGATTTTTGCTGGGAGAGGTGAGACAAGAGGAAA
CCTTCAGCATCAGTGACTCCCAGATCAGCAACACCGAATTCCTGCAAGTGATTGAGATCC
ATAACCATCAGCCTTGTTCAAAGCTTTTTAGTTTTTATGACTATGCAAGCAAAGTTAATG
AAGAGAGTTTGGACAGGATTCTTAAAGATCGGAGAAAGAAGGTTATAGGGTGGTACAGAT
TCCGGCGGAACACACAGCAGCAGATGTCATACAGGGAGCAGGTCATCCACAAGCAGCTCA
CCCGCATCCTGGGGGTGCCCGACCTCGTCTTCCTTCTCTTCAGCTTCATCTCCACCGCCA
ACAATTCCACTCATGCTTTAGAATATGTTCTCTTTAGACCAAATCGAAGGTATAATCAAA
GGATATCCCTTGCTATTCCCAATCTAGGCAATACTAGCCAGCAAGAGTATAAAGTGTCTT
CAGTGCCAAATACTTCTCAGAGTTATGCCAAAGTTATTAAAGAACATGGTACTGACTTTT
TTGACAAGGATGGAGTAATGAAAGACATCAGGGCGATTTATCAGGTTTATAATGCACTTC
AGGAGAAGGTGCAGGCAGTGTGTGCAGACGTAGAAAAGAGTGAGCGAGTTGTTGAATCTT
GTCAGGCAGAAGTGAACAAATTAAGAAGACAAATCATTCAGAGGAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATTTCCATCATGGCGGCTTCCATTTCGGGCTACACCTTCAGCGCTGTGTGTTTCCACA
GCGCCAACAGCAACGCCGACCACGAAGGATTTTTGCTGGGAGAGGTGAGACAAGAGGAAA
CCTTCAGCATCAGTGACTCCCAGATCAGCAACACCGAATTCCTGCAAGTGATTGAGATCC
ATAACCATCAGCCTTGTTCAAAGCTTTTTAGTTTTTATGACTATGCAAGCAAAGTTAATG
AAGAGAGTTTGGACAGGATTCTTAAAGATCGGAGAAAGAAGGTTATAGGGTGGTACAGAT
TCCGGCGGAACACACAGCAGCAGATGTCATACAGGGAGCAGGTCATCCACAAGCAGCTCA
CCCGCATCCTGGGGGTGCCCGACCTCGTCTTCCTTCTCTTCAGCTTCATCTCCACCGCCA
ACAATTCCACTCATGCTTTAGAATATGTTCTCTTTAGACCAAATCGAAGGTATAATCAAA
GGATATCCCTTGCTATTCCCAATCTAGGCAATACTAGCCAGCAAGAGTATAAAGTGTCTT
CAGTGCCAAATACTTCTCAGAGTTATGCCAAAGTTATTAAAGAACATGGTACTGACTTTT
TTGACAAGGATGGAGTAATGAAAGACATCAGGGCGATTTATCAGGTTTATAATGCACTTC
AGGAGAAGGTGCAGGCAGTGTGTGCAGACGTAGAAAAGAGTGAGCGAGTTGTTGAATCTT
GTCAGGCAGAAGTGAACAAATTAAGAAGACAAATCATTCAGAGGAAGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|60099205|emb|CAH65433.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|60099205|emb|CAH65433.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               278-768, gnl|bosTau2|chr20 (24083787-24083297)
               

               
               278-768, gnl|Hg17|chr10 (126505153-126510001)
               

               
               278-768, gnl|Mm7|chr7 (129279720-129285754)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               278-768, gnl|bosTau2|chr20 (24083787-24083297)
               

               
               278-768, gnl|Hg17|chr10 (126505153-126510001)
               

               
               278-768, gnl|Mm7|chr7 (129279720-129285754)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               clu (0.119646)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               clu (0.119646)

	278-768, gnl\|bosTau2\|chr20 (24083787-24083297)
	278-768, gnl\|Hg17\|chr10 (126505153-126510001)
	278-768, gnl\|Mm7\|chr7 (129279720-129285754)

	mgm (0.180343)
	sin (0.174948)
	nco (0.161734)
	csk (0.140746)
	pla (0.133672)
	ute (0.132784)
	clu (0.119646)