Ss1.1-Ova1-OVR010011A04.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAACCAAAGGGCAGCGCGCCTCCCCAGGACACCCTCCCCGCGCAGGCAGTTTCGCCCGGA CCCCCCGACTGGGTTGGGAGGGGCGGCCGGACGGGGCGGGCCGGAGGCTGGCGTCCACGC CTTCCCAGCATTCGGCTCGCCGCGTCGTGCCGTTCTCCCGCTTCCTTTCCTTTTCGTTCC CCTCCTTCTTTCTTTCCTTCCTTCCTTCCGCCGGGAGCGATGGAGTCGGGGCGCCGGGCG GCCGCGGCACTGCTGGCGCTGCTGTGCGCTGGCTGCGCGCTGCGCTCCGGACGCGCCCAG TACGAGCGCTACAGCTTCCGCAGCTTCCCGCGGGACGAGCTGATGCCGCTCGAGTCGGCC TACCGGCACGCGCTGGACCAGTACAGCGGCGAGCACTGGGCCGAGAGCGTGGGCTACCTG GAGATTAGCCTGCGGCTGCACCGCCTGCTGCGCGACAGCGAGGCCTTCTGCCACCGCAAC TGCAGCGCGGCGCCACAGCCTGAGCCCACCGCCGGCCTCGCGCGCTATCCAGAGCTGCGC CTCTTTGGGGGCCTGCTGCGCCGCGCACACTGCCTCAAACGCTGCAAGCAGGGCCTGCCA GCCTTCCGCCAGTCACAGCCCAGCCGCGAAGTACTGGCCGACTTCCAGCGCCGAGAGCCC TACAAGTTTCTGCAGTTCGCCTACTTCAAGGCAAATAATCTCCCGAAAGCCATTGCTGCT GCTCACACCTTTCTATTGAAGCATCCTGATGATGAAATGATGAAGAGAAACATGGCTTAT TACAAGAGCCTGCCTGATGCCGAGGACTACATTAAAGACTTGGAAAGCAAGTCCTATGAG AGCCTTTTCATCCGAGCTGTGCGGGCGTACAATGGTGAGAACTGGAGGACGTGCATCACG GACATGGAGCTGGCCCTTCCCGACTTCTTCAAGGCCTTTTATGAGTGTCTGGCTGCCTGC GAGGGCTCCCGGGAGATCAAGGACTTCAAGGATTTCTATCTTTCCATAGCAGATCATTAT GTGGAAGTTCTGGAATGCAAAATCCAGTGTGAAGAGAACCTCACCCCAGTTATAGGAGGC TATCCAGTGGAGAAATTTGTGGCTACCATGTATCATTATTTGCAGTTTGCCTATTATAAG TTGAATGACCTGAAGAACGCGGCCCCCTGTGCCGTCAGCTACCTGCTCTTCGATCACAAC GACAAGGTCATGCAGCAGAACCTGGTGTATTACCAGTACCACAGGGACAAGTGGGGGCTT TCGGATGAGCATTTCCAGCCCAGACCAGAAGCAGTTCAGTTCTTTAATGTGACTACACTC CAGAAAGAGCTGTATGACTTTGCTAAGGAAAACATAATGGATGATGATGAGGGAGAGGTC GTGGAATACGTGGACGACCTCTTGGAGCTGGAGGAGACCAGCTAGTCCAGCAGCCAGAGA GACTTCCCCTCGGTGTTCAGGAAACAGATTCTTCGTCTTCCTTTTCCCAATAGTTGATAC CTCAGAGCCTCTCTTTACTCTGTGAAGCGAAAGGGAAGCCCCCATCTCTCACTACATCTA ACCAGGGTTGAGCCTGCCTTCCCTGTGTCCACACTTGCCTCCTTATAGCCACGCTCGCCC TGCCATCTTCCCACCTGTCTCCCCATCTTCTCACCTGTCTCCCCATCATTACACCTGCCT CCCCCATGTCCACACCTGTGTTCCCATTGTCACACCTGCCTTCTCCATTTGTATACCTGA GAAAGTCACCATTTTGGTTAGAGGGACACTTCTCCATGGTTTGTGTTTTACCAGAAAAAT CAGTATTATTTTTTAAATAAGAAAAATACACCTAAAAGATGGGAGTTATAAAAAGCCTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAACCAAAGGGCAGCGCGCCTCCCCAGGACACCCTCCCCGCGCAGGCAGTTTCGCCCGGA CCCCCCGACTGGGTTGGGAGGGGCGGCCGGACGGGGCGGGCCGGAGGCTGGCGTCCACGC CTTCCCAGCATTCGGCTCGCCGCGTCGTGCCGTTCTCCCGCTTCCTTTCCTTTTCGTTCC CCTCCTTCTTTCTTTCCTTCCTTCCTTCCGCCGGGAGCGATGGAGTCGGGGCGCCGGGCG GCCGCGGCACTGCTGGCGCTGCTGTGCGCTGGCTGCGCGCTGCGCTCCGGACGCGCCCAG TACGAGCGCTACAGCTTCCGCAGCTTCCCGCGGGACGAGCTGATGCCGCTCGAGTCGGCC TACCGGCACGCGCTGGACCAGTACAGCGGCGAGCACTGGGCCGAGAGCGTGGGCTACCTG GAGATTAGCCTGCGGCTGCACCGCCTGCTGCGCGACAGCGAGGCCTTCTGCCACCGCAAC TGCAGCGCGGCGCCACAGCCTGAGCCCACCGCCGGCCTCGCGCGCTATCCAGAGCTGCGC CTCTTTGGGGGCCTGCTGCGCCGCGCACACTGCCTCAAACGCTGCAAGCAGGGCCTGCCA GCCTTCCGCCAGTCACAGCCCAGCCGCGAAGTACTGGCCGACTTCCAGCGCCGAGAGCCC TACAAGTTTCTGCAGTTCGCCTACTTCAAGGCAAATAATCTCCCGAAAGCCATTGCTGCT GCTCACACCTTTCTATTGAAGCATCCTGATGATGAAATGATGAAGAGAAACATGGCTTAT TACAAGAGCCTGCCTGATGCCGAGGACTACATTAAAGACTTGGAAAGCAAGTCCTATGAG AGCCTTTTCATCCGAGCTGTGCGGGCGTACAATGGTGAGAACTGGAGGACGTGCATCACG GACATGGAGCTGGCCCTTCCCGACTTCTTCAAGGCCTTTTATGAGTGTCTGGCTGCCTGC GAGGGCTCCCGGGAGATCAAGGACTTCAAGGATTTCTATCTTTCCATAGCAGATCATTAT GTGGAAGTTCTGGAATGCAAAATCCAGTGTGAAGAGAACCTCACCCCAGTTATAGGAGGC TATCCAGTGGAGAAATTTGTGGCTACCATGTATCATTATTTGCAGTTTGCCTATTATAAG TTGAATGACCTGAAGAACGCGGCCCCCTGTGCCGTCAGCTACCTGCTCTTCGATCACAAC GACAAGGTCATGCAGCAGAACCTGGTGTATTACCAGTACCACAGGGACAAGTGGGGGCTT TCGGATGAGCATTTCCAGCCCAGACCAGAAGCAGTTCAGTTCTTTAATGTGACTACACTC CAGAAAGAGCTGTATGACTTTGCTAAGGAAAACATAATGGATGATGATGAGGGAGAGGTC GTGGAATACGTGGACGACCTCTTGGAGCTGGAGGAGACCAGCTAGTCCAGCAGCCAGAGA GACTTCCCCTCGGTGTTCAGGAAACAGATTCTTCGTCTTCCTTTTCCCAATAGTTGATAC CTCAGAGCCTCTCTTTACTCTGTGAAGCGAAAGGGAAGCCCCCATCTCTCACTACATCTA ACCAGGGTTGAGCCTGCCTTCCCTGTGTCCACACTTGCCTCCTTATAGCCACGCTCGCCC TGCCATCTTCCCACCTGTCTCCCCATCTTCTCACCTGTCTCCCCATCATTACACCTGCCT CCCCCATGTCCACACCTGTGTTCCCATTGTCACACCTGCCTTCTCCATTTGTATACCTGA GAAAGTCACCATTTTGGTTAGAGGGACACTTCTCCATGGTTTGTGTTTTACCAGAAAAAT CAGTATTATTTTTTAAATAAGAAAAATACACCTAAAAGATGGGAGTTATAAAAAGCCTAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 632-747, + strand, RNAz p=0.803387 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 632-747, + strand, RNAz p=0.803387 |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 2-172, gnl|bosTau2|chr22 (4966843-4967012) | |
| 2-172, gnl|Hg17|chr3 (33130350-33130537) | |
| 195-958, gnl|bosTau2|chr19 (1179163-1179917) | |
| 195-958, gnl|Hg17|chr3 (33130549-33158144) | |
| 195-958, gnl|Mm7|chr9 (114041705-114035897) | |
| 1010-1139, gnl|bosTau2|chr22 (4980027-4980156) | |
| 1010-1139, gnl|canFam2|chr23 (6724164-6724013) | |
| 1010-1139, gnl|danRer3|chr19 (68972344-68972493) | |
| 1010-1139, gnl|dasNov1|scaffold_182300 (379-230) | |
| 1010-1139, gnl|echTel1|scaffold_156691 (14187-14338) | |
| 1010-1139, gnl|fr1|chrUn (295288061-295287925) | |
| 1010-1139, gnl|galGal2|chr2 (43572765-43572912) | |
| 1010-1139, gnl|hg17|chr3 (33146426-33146574) | |
| 1010-1139, gnl|Hg17|chr3 (33146432-33146561) | |
| 1010-1139, gnl|loxAfr1|scaffold_11204 (2428-2277) | |
| 1010-1139, gnl|mm7|chr9 (114032818-114032673) | |
| 1010-1139, gnl|Mm7|chr9 (114032813-114032684) | |
| 1010-1139, gnl|monDom2|scaffold_7 (61419341-61419198) | |
| 1010-1139, gnl|oryCun1|scaffold_157714 (16574-16719) | |
| 1010-1139, gnl|panTro1|chr2_random (33061842-33061694) | |
| 1010-1139, gnl|rheMac2|chr2 (175616039-175616187) | |
| 1010-1139, gnl|rn3|chr8 (118779295-118779169) | |
| 1010-1139, gnl|tetNig1|chr21 (1325326-1325178) | |
| 1010-1139, gnl|xenTro1|scaffold_1370 (55980-56118) | |
| 1142-1286, gnl|bosTau2|chr22 (4991981-4992125) | |
| 1142-1286, gnl|canFam2|chr23 (6719749-6719546) | |
| 1142-1286, gnl|danRer3|chr19 (68974477-68974655) | |
| 1142-1286, gnl|dasNov1|scaffold_229898 (50-252) | |
| 1142-1286, gnl|echTel1|scaffold_312412 (8258-8095) | |
| 1142-1286, gnl|fr1|chrUn (295287832-295287678) | |
| 1142-1286, gnl|galGal2|chr2 (43574501-43574684) | |
| 1142-1286, gnl|hg17|chr3 (33149007-33149212) | |
| 1142-1286, gnl|Hg17|chr3 (33149051-33149195) | |
| 1142-1286, gnl|mm7|chr9 (114031192-114030992) | |
| 1142-1286, gnl|Mm7|chr9 (114031151-114031007) | |
| 1142-1286, gnl|monDom2|scaffold_7 (61414630-61414415) | |
| 1142-1286, gnl|oryCun1|scaffold_204030 (40903-41046) | |
| 1142-1286, gnl|panTro1|chr2_random (33059259-33059054) | |
| 1142-1286, gnl|rheMac2|chr2 (175618568-175618773) | |
| 1142-1286, gnl|rn3|chr8 (118778236-118778045) | |
| 1142-1286, gnl|tetNig1|chr21 (1325126-1324950) | |
| 1142-1286, gnl|xenTro1|scaffold_1370 (57165-57359) | |
| 1370-1860, gnl|bosTau2|chr19 (1180524-1181005) | |
| 1370-1860, gnl|Hg17|chr3 (33158889-33159678) | |
| 1370-1860, gnl|Mm7|chr9 (114026680-114026232) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-172, gnl|bosTau2|chr22 (4966843-4967012) | |
| 2-172, gnl|Hg17|chr3 (33130350-33130537) | |
| 195-958, gnl|bosTau2|chr19 (1179163-1179917) | |
| 195-958, gnl|Hg17|chr3 (33130549-33158144) | |
| 195-958, gnl|Mm7|chr9 (114041705-114035897) | |
| 1010-1139, gnl|bosTau2|chr22 (4980027-4980156) | |
| 1010-1139, gnl|canFam2|chr23 (6724164-6724013) | |
| 1010-1139, gnl|danRer3|chr19 (68972344-68972493) | |
| 1010-1139, gnl|dasNov1|scaffold_182300 (379-230) | |
| 1010-1139, gnl|echTel1|scaffold_156691 (14187-14338) | |
| 1010-1139, gnl|fr1|chrUn (295288061-295287925) | |
| 1010-1139, gnl|galGal2|chr2 (43572765-43572912) | |
| 1010-1139, gnl|hg17|chr3 (33146426-33146574) | |
| 1010-1139, gnl|Hg17|chr3 (33146432-33146561) | |
| 1010-1139, gnl|loxAfr1|scaffold_11204 (2428-2277) | |
| 1010-1139, gnl|mm7|chr9 (114032818-114032673) | |
| 1010-1139, gnl|Mm7|chr9 (114032813-114032684) | |
| 1010-1139, gnl|monDom2|scaffold_7 (61419341-61419198) | |
| 1010-1139, gnl|oryCun1|scaffold_157714 (16574-16719) | |
| 1010-1139, gnl|panTro1|chr2_random (33061842-33061694) | |
| 1010-1139, gnl|rheMac2|chr2 (175616039-175616187) | |
| 1010-1139, gnl|rn3|chr8 (118779295-118779169) | |
| 1010-1139, gnl|tetNig1|chr21 (1325326-1325178) | |
| 1010-1139, gnl|xenTro1|scaffold_1370 (55980-56118) | |
| 1142-1286, gnl|bosTau2|chr22 (4991981-4992125) | |
| 1142-1286, gnl|canFam2|chr23 (6719749-6719546) | |
| 1142-1286, gnl|danRer3|chr19 (68974477-68974655) | |
| 1142-1286, gnl|dasNov1|scaffold_229898 (50-252) | |
| 1142-1286, gnl|echTel1|scaffold_312412 (8258-8095) | |
| 1142-1286, gnl|fr1|chrUn (295287832-295287678) | |
| 1142-1286, gnl|galGal2|chr2 (43574501-43574684) | |
| 1142-1286, gnl|hg17|chr3 (33149007-33149212) | |
| 1142-1286, gnl|Hg17|chr3 (33149051-33149195) | |
| 1142-1286, gnl|mm7|chr9 (114031192-114030992) | |
| 1142-1286, gnl|Mm7|chr9 (114031151-114031007) | |
| 1142-1286, gnl|monDom2|scaffold_7 (61414630-61414415) | |
| 1142-1286, gnl|oryCun1|scaffold_204030 (40903-41046) | |
| 1142-1286, gnl|panTro1|chr2_random (33059259-33059054) | |
| 1142-1286, gnl|rheMac2|chr2 (175618568-175618773) | |
| 1142-1286, gnl|rn3|chr8 (118778236-118778045) | |
| 1142-1286, gnl|tetNig1|chr21 (1325126-1324950) | |
| 1142-1286, gnl|xenTro1|scaffold_1370 (57165-57359) | |
| 1370-1860, gnl|bosTau2|chr19 (1180524-1181005) | |
| 1370-1860, gnl|Hg17|chr3 (33158889-33159678) | |
| 1370-1860, gnl|Mm7|chr9 (114026680-114026232) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| cov (0.396458) | |
| ebs (0.354904) | |
| eye (0.341006) | |
| cly (0.241284) | |
| jca (0.22792) | |
| col (0.195008) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cut (0.169924) | |
| cje (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| spl (0.143184) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| bla (0.124347) | |
| clu (0.119646) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| ebs (0.354904) | |
| eye (0.341006) | |
| cly (0.241284) | |
| jca (0.22792) | |
| col (0.195008) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cut (0.169924) | |
| cje (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| spl (0.143184) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| bla (0.124347) | |
| clu (0.119646) | |
| cty (0.10408) | |
| eje (0.0988338) |