Ss1.1-Ova1-OVR010011B12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAACTGAAAGGAGGAAAGGACGACTATTAAAGAAGAGCTTGAGCTGCACGGGGCAGTC TCAGCTACTCAAGTGCCCGGTGGGGGCTGAGCCGGCAGTGCTGACGGGCCCGGCTGGGCC GTTTTGTCTGGACGGCTGAGCAAATCTCCCAGCACCCTAGCCGGCTGTGGCCTTAGGTCC TGGAAAATGGCAGATGTGCCCAACGGCGAGCAGGGGTGCAGCTCCCCACTGGAGCTGTTC AACAGCATAGCTGCTCAGGGGGAGCTCGTGAGGTCCCTCAAAGCCAGACACGCGGCGAAG GATGAAATTGATTCCGCAGTAAAAATGTTGTTATCCTTGAAAATGAGCTACAAAGCTGCG ATGGGGGAGGATTACAAGGCTGACTGTCCTCCAGGGAACCGGGCGCCAGGGATTGACAGT GGCCTGGATGCCACAGAAGCAGGAGACGATTTTGTGGACCCGTGGACAGTACAGACAAGC AGTGCAAAAGGCATCGACTATGACAAGCTCATTGTTCGGTTCGGAAGCAGTAAAATTGAC AAGGAGCTGATAGACCGGATAGAGAGAGCCACTGGCCAGAGGCCACACCGCTTCCTGCGC AGGGGCATCTTCTTCTCACACAGAGATATGAATCAGGTGCTCGATGCCTATGAAAACAAG AAGCCGTTTTATCTGTACACGGGCAGGGGCCCGTCCTCCGAAGCAATGCACGTGGGTCAC CTCATCCCGTTCATCTTCACCAAGTGGCTGCAGGATGTGTTCAACGTGCCTTTAGTCATC CAGATGACGGACGACGAGAAGTACCTCTGGAAGGAGCTGACCCTGGAGCAGGCCCACGGC TACGCCGTGGAGAACGCCAAGGACATCATCGCCTGCGGCTTCGACGTCAACAAGACCTTC ATCTTCTCCGACCTTGACTACATGGGGATGAGCCCGGGCTTCTACAAGAATGTGGTGAAG ATTCAGAAGCACGTTACCTTCAACCAAGTGAAAGGCATCTTCGGCTTCACCGACAGTGAC TGCATTGGGAAGATCAGCTTCCCCGCCATCCAGGCTGCTCCCTCCTTCAGCAGTTCCTTC CCGCAGATCTTCCGAGACCGGACAGACATCCAGTGCCTCATCCCGTGTGCCATCGACCAG GACCCGTACTTCAGGATGACCAGAGACGTGGCCCCCAGGATCGGCTACCCCAAGCCCGCC CTGCTGCACTCGACCTTCTTCCCTGCCCTGCAGGGGGCCCAGACCAAAATGAGCGCCAGC GACCCCAACTCCTCCATCTTCCTCACGGACACGGCCAAGCAGATCAAGACCAAGGTCAAC AAGCACGCGTTTTCGGGAGGCAGGGACACCATCGAGGAGCACCGGCAGTTTGGGGGCAAC TGCGACGTGGACGTGTCCTTCATGTACCTGACCTTCTTCCTGGAGGATGACGACAGGCTC GAGCAGATCAGGAAGGATTACAGCAGCGGGGCCATGCTCACGGGCGAGTATTGGCCCTTT CTCATAGAGGTGCTACAGCCCCTGAGTCTTTTGTGGGTGAAACTTGCTGATCCCCTGGCT AAACTCCAGACCGTGCATGTGCTCGACTCCAGGAATCAACTACTAATGTTTGTTTCCACC AAATAATCCTAGACACTCCATCCCGAAAACCAGTGGCTGCTTTACTCTGATGGGCCTGAT CCTGAGGGGGTCTGTTACCTTTGCAGATGCTTTTGTTTTGACACTTGACTGGCGTGGAAG TCTGCACAGAGCAGTGCCCTGCCTGTGTCCCCAGACGGGCGGACGTAGCTAGACCGCGTG CAGCCGCCCTCTGGGCCCTCGGCGGGGCATCCGCAGGAGGCCCATTTAATCGTGCATCCT GGGTAGTTTCGGAAAAGCAGAAGACCCCTCCTGGGTCCAAGTATCTGTCCCCTCTGCAGG CGCAGGGCCCACTCCCGAGTGCCCAACTCTGGTCTCACTCGTGACAAGTAAACTTCCTTC ATTCCTAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAACTGAAAGGAGGAAAGGACGACTATTAAAGAAGAGCTTGAGCTGCACGGGGCAGTC TCAGCTACTCAAGTGCCCGGTGGGGGCTGAGCCGGCAGTGCTGACGGGCCCGGCTGGGCC GTTTTGTCTGGACGGCTGAGCAAATCTCCCAGCACCCTAGCCGGCTGTGGCCTTAGGTCC TGGAAAATGGCAGATGTGCCCAACGGCGAGCAGGGGTGCAGCTCCCCACTGGAGCTGTTC AACAGCATAGCTGCTCAGGGGGAGCTCGTGAGGTCCCTCAAAGCCAGACACGCGGCGAAG GATGAAATTGATTCCGCAGTAAAAATGTTGTTATCCTTGAAAATGAGCTACAAAGCTGCG ATGGGGGAGGATTACAAGGCTGACTGTCCTCCAGGGAACCGGGCGCCAGGGATTGACAGT GGCCTGGATGCCACAGAAGCAGGAGACGATTTTGTGGACCCGTGGACAGTACAGACAAGC AGTGCAAAAGGCATCGACTATGACAAGCTCATTGTTCGGTTCGGAAGCAGTAAAATTGAC AAGGAGCTGATAGACCGGATAGAGAGAGCCACTGGCCAGAGGCCACACCGCTTCCTGCGC AGGGGCATCTTCTTCTCACACAGAGATATGAATCAGGTGCTCGATGCCTATGAAAACAAG AAGCCGTTTTATCTGTACACGGGCAGGGGCCCGTCCTCCGAAGCAATGCACGTGGGTCAC CTCATCCCGTTCATCTTCACCAAGTGGCTGCAGGATGTGTTCAACGTGCCTTTAGTCATC CAGATGACGGACGACGAGAAGTACCTCTGGAAGGAGCTGACCCTGGAGCAGGCCCACGGC TACGCCGTGGAGAACGCCAAGGACATCATCGCCTGCGGCTTCGACGTCAACAAGACCTTC ATCTTCTCCGACCTTGACTACATGGGGATGAGCCCGGGCTTCTACAAGAATGTGGTGAAG ATTCAGAAGCACGTTACCTTCAACCAAGTGAAAGGCATCTTCGGCTTCACCGACAGTGAC TGCATTGGGAAGATCAGCTTCCCCGCCATCCAGGCTGCTCCCTCCTTCAGCAGTTCCTTC CCGCAGATCTTCCGAGACCGGACAGACATCCAGTGCCTCATCCCGTGTGCCATCGACCAG GACCCGTACTTCAGGATGACCAGAGACGTGGCCCCCAGGATCGGCTACCCCAAGCCCGCC CTGCTGCACTCGACCTTCTTCCCTGCCCTGCAGGGGGCCCAGACCAAAATGAGCGCCAGC GACCCCAACTCCTCCATCTTCCTCACGGACACGGCCAAGCAGATCAAGACCAAGGTCAAC AAGCACGCGTTTTCGGGAGGCAGGGACACCATCGAGGAGCACCGGCAGTTTGGGGGCAAC TGCGACGTGGACGTGTCCTTCATGTACCTGACCTTCTTCCTGGAGGATGACGACAGGCTC GAGCAGATCAGGAAGGATTACAGCAGCGGGGCCATGCTCACGGGCGAGTATTGGCCCTTT CTCATAGAGGTGCTACAGCCCCTGAGTCTTTTGTGGGTGAAACTTGCTGATCCCCTGGCT AAACTCCAGACCGTGCATGTGCTCGACTCCAGGAATCAACTACTAATGTTTGTTTCCACC AAATAATCCTAGACACTCCATCCCGAAAACCAGTGGCTGCTTTACTCTGATGGGCCTGAT CCTGAGGGGGTCTGTTACCTTTGCAGATGCTTTTGTTTTGACACTTGACTGGCGTGGAAG TCTGCACAGAGCAGTGCCCTGCCTGTGTCCCCAGACGGGCGGACGTAGCTAGACCGCGTG CAGCCGCCCTCTGGGCCCTCGGCGGGGCATCCGCAGGAGGCCCATTTAATCGTGCATCCT GGGTAGTTTCGGAAAAGCAGAAGACCCCTCCTGGGTCCAAGTATCTGTCCCCTCTGCAGG CGCAGGGCCCACTCCCGAGTGCCCAACTCTGGTCTCACTCGTGACAAGTAAACTTCCTTC ATTCCTAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 379-495, - strand, RNAz p=0.521899 | |
| 1178-1316, - strand, RNAz p=0.869692 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 379-495, - strand, RNAz p=0.521899 | |
| 1178-1316, - strand, RNAz p=0.869692 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 299-521, gnl|bosTau2|chr21 (45006435-45006213) | |
| 299-521, gnl|canFam2|chr8 (71671442-71671607) | |
| 299-521, gnl|danRer3|chr8 (31029985-31030142) | |
| 299-521, gnl|dasNov1|scaffold_146007 (697-873) | |
| 299-521, gnl|echTel1|scaffold_202097 (6772-6928) | |
| 299-521, gnl|fr1|chrUn (55236490-55236334) | |
| 299-521, gnl|galGal2|chr5 (45389227-45389390) | |
| 299-521, gnl|hg17|chr14 (99897775-99897953) | |
| 299-521, gnl|Hg17|chr14 (99898013-99897779) | |
| 299-521, gnl|loxAfr1|scaffold_22329 (4177-4017) | |
| 299-521, gnl|mm7|chr12 (106403848-106404029) | |
| 299-521, gnl|Mm7|chr12 (106404089-106403868) | |
| 299-521, gnl|monDom2|scaffold_6 (82018235-82018392) | |
| 299-521, gnl|oryCun1|scaffold_196694 (1263-1440) | |
| 299-521, gnl|panTro1|chr15 (100402975-100403153) | |
| 299-521, gnl|rheMac2|chr7 (163642050-163642228) | |
| 299-521, gnl|rn3|chr6 (133226732-133226913) | |
| 299-521, gnl|tetNig1|chr10 (6830834-6830678) | |
| 299-521, gnl|xenTro1|scaffold_341 (504129-503969) | |
| 740-927, gnl|bosTau2|chr21 (44997985-44997798) | |
| 740-927, gnl|canFam2|chr8 (71661967-71662183) | |
| 740-927, gnl|danRer3|chr8 (31028740-31028943) | |
| 740-927, gnl|dasNov1|scaffold_69284 (7815-8031) | |
| 740-927, gnl|echTel1|scaffold_202097 (1832-2048) | |
| 740-927, gnl|fr1|chrUn (55237274-55237071) | |
| 740-927, gnl|galGal2|chr5 (45384099-45384306) | |
| 740-927, gnl|hg17|chr14 (99889771-99889988) | |
| 740-927, gnl|Hg17|chr14 (99889964-99889776) | |
| 740-927, gnl|loxAfr1|scaffold_22329 (10509-10339) | |
| 740-927, gnl|mm7|chr12 (106396287-106396492) | |
| 740-927, gnl|Mm7|chr12 (106396479-106396292) | |
| 740-927, gnl|monDom2|scaffold_6 (82011011-82011213) | |
| 740-927, gnl|oryCun1|scaffold_116254 (5652-5866) | |
| 740-927, gnl|panTro1|chr15 (100394905-100395122) | |
| 740-927, gnl|rheMac2|chr7 (163633258-163633475) | |
| 740-927, gnl|rn3|chr6 (133219520-133219721) | |
| 740-927, gnl|tetNig1|chr10 (6831628-6831422) | |
| 740-927, gnl|xenTro1|scaffold_341 (509243-509034) | |
| 1138-1316, gnl|bosTau2|chr21 (44994781-44994603) | |
| 1138-1316, gnl|Hg17|chr14 (99878664-99878486) | |
| 1138-1316, gnl|Mm7|chr12 (106387364-106387190) | |
| 1602-1978, gnl|bosTau2|chr21 (44989549-44989161) | |
| 1602-1978, gnl|canFam2|chr8 (71648132-71648638) | |
| 1602-1978, gnl|dasNov1|scaffold_156246 (3314-3949) | |
| 1602-1978, gnl|hg17|chr14 (99869555-99870174) | |
| 1602-1978, gnl|Hg17|chr14 (99870261-99869889) | |
| 1602-1978, gnl|loxAfr1|scaffold_176980 (717-68) | |
| 1602-1978, gnl|mm7|chr12 (106380888-106381531) | |
| 1602-1978, gnl|Mm7|chr12 (106381609-106381221) | |
| 1602-1978, gnl|oryCun1|scaffold_193898 (62355-62887) | |
| 1602-1978, gnl|panTro1|chr15 (100419030-100419647) | |
| 1602-1978, gnl|rheMac2|chr7 (163613485-163614117) | |
| 1602-1978, gnl|rn3|chr6 (133206756-133207375) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 299-521, gnl|bosTau2|chr21 (45006435-45006213) | |
| 299-521, gnl|canFam2|chr8 (71671442-71671607) | |
| 299-521, gnl|danRer3|chr8 (31029985-31030142) | |
| 299-521, gnl|dasNov1|scaffold_146007 (697-873) | |
| 299-521, gnl|echTel1|scaffold_202097 (6772-6928) | |
| 299-521, gnl|fr1|chrUn (55236490-55236334) | |
| 299-521, gnl|galGal2|chr5 (45389227-45389390) | |
| 299-521, gnl|hg17|chr14 (99897775-99897953) | |
| 299-521, gnl|Hg17|chr14 (99898013-99897779) | |
| 299-521, gnl|loxAfr1|scaffold_22329 (4177-4017) | |
| 299-521, gnl|mm7|chr12 (106403848-106404029) | |
| 299-521, gnl|Mm7|chr12 (106404089-106403868) | |
| 299-521, gnl|monDom2|scaffold_6 (82018235-82018392) | |
| 299-521, gnl|oryCun1|scaffold_196694 (1263-1440) | |
| 299-521, gnl|panTro1|chr15 (100402975-100403153) | |
| 299-521, gnl|rheMac2|chr7 (163642050-163642228) | |
| 299-521, gnl|rn3|chr6 (133226732-133226913) | |
| 299-521, gnl|tetNig1|chr10 (6830834-6830678) | |
| 299-521, gnl|xenTro1|scaffold_341 (504129-503969) | |
| 740-927, gnl|bosTau2|chr21 (44997985-44997798) | |
| 740-927, gnl|canFam2|chr8 (71661967-71662183) | |
| 740-927, gnl|danRer3|chr8 (31028740-31028943) | |
| 740-927, gnl|dasNov1|scaffold_69284 (7815-8031) | |
| 740-927, gnl|echTel1|scaffold_202097 (1832-2048) | |
| 740-927, gnl|fr1|chrUn (55237274-55237071) | |
| 740-927, gnl|galGal2|chr5 (45384099-45384306) | |
| 740-927, gnl|hg17|chr14 (99889771-99889988) | |
| 740-927, gnl|Hg17|chr14 (99889964-99889776) | |
| 740-927, gnl|loxAfr1|scaffold_22329 (10509-10339) | |
| 740-927, gnl|mm7|chr12 (106396287-106396492) | |
| 740-927, gnl|Mm7|chr12 (106396479-106396292) | |
| 740-927, gnl|monDom2|scaffold_6 (82011011-82011213) | |
| 740-927, gnl|oryCun1|scaffold_116254 (5652-5866) | |
| 740-927, gnl|panTro1|chr15 (100394905-100395122) | |
| 740-927, gnl|rheMac2|chr7 (163633258-163633475) | |
| 740-927, gnl|rn3|chr6 (133219520-133219721) | |
| 740-927, gnl|tetNig1|chr10 (6831628-6831422) | |
| 740-927, gnl|xenTro1|scaffold_341 (509243-509034) | |
| 1138-1316, gnl|bosTau2|chr21 (44994781-44994603) | |
| 1138-1316, gnl|Hg17|chr14 (99878664-99878486) | |
| 1138-1316, gnl|Mm7|chr12 (106387364-106387190) | |
| 1602-1978, gnl|bosTau2|chr21 (44989549-44989161) | |
| 1602-1978, gnl|canFam2|chr8 (71648132-71648638) | |
| 1602-1978, gnl|dasNov1|scaffold_156246 (3314-3949) | |
| 1602-1978, gnl|hg17|chr14 (99869555-99870174) | |
| 1602-1978, gnl|Hg17|chr14 (99870261-99869889) | |
| 1602-1978, gnl|loxAfr1|scaffold_176980 (717-68) | |
| 1602-1978, gnl|mm7|chr12 (106380888-106381531) | |
| 1602-1978, gnl|Mm7|chr12 (106381609-106381221) | |
| 1602-1978, gnl|oryCun1|scaffold_193898 (62355-62887) | |
| 1602-1978, gnl|panTro1|chr15 (100419030-100419647) | |
| 1602-1978, gnl|rheMac2|chr7 (163613485-163614117) | |
| 1602-1978, gnl|rn3|chr6 (133206756-133207375) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| clu (0.717875) | |
| ill (0.526778) | |
| elu (0.385356) | |
| hyp (0.285673) | |
| cbr (0.255951) | |
| ece (0.229305) | |
| cty (0.20816) | |
| col (0.195008) | |
| fbs (0.175346) | |
| che (0.136314) | |
| ute (0.132784) | |
| ova (0.129132) | |
| eru (0.120048) | |
| ecc (0.115035) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.717875) | |
| ill (0.526778) | |
| elu (0.385356) | |
| hyp (0.285673) | |
| cbr (0.255951) | |
| ece (0.229305) | |
| cty (0.20816) | |
| col (0.195008) | |
| fbs (0.175346) | |
| che (0.136314) | |
| ute (0.132784) | |
| ova (0.129132) | |
| eru (0.120048) | |
| ecc (0.115035) |