Non-Coding RNA Search

Ss1.1-Ova1-OVR010011D12.5

Sequence:


               
               CTTTGGGCTCCCCTCAGAACCATATATTACAAGCTCCAGGCGAGCCAGCCCCACCATGGG
CAGAAATGAGAAGTCCCCACCCACCATGGACAGAGGTGAGGGGCCCCCCTCCCGGTATCA
TCCCCGAGAATGGGCTAGTGAGGAGACTCAACACCGTGCCCAACCTGTCCCGGGTGATCT
GGGTCAAGACACCCAAGCCAGGCAACCCTAGCTCTGAGGAGCCAAGCCCACAGGAGGTCC
CCGGCTGCAAGCAGGAGTTGCCTGAGCCTTTGGCCTCAGGTGGGAAGCCGCGGAAGGGCA
AGAGACAGGGCAGTCAGGCCAAGAAGAGCGAGGTGAGCCCACCCCCCCAGTCCCCAGCCT
GCCTTGAGGCTCCCAGTGCCAAGGGCCAGACCCCCAGCCCCAAGCAGCCAGGCAAGGCCC
TGGAGCCTCCCAGAGTGGACAGCTGTGCCGAGGCTGGAGAGGGGAGCCGGGGGGCCCAAC
CAGGACCAGGCTGGGCTGGCAGCCCCAAAGCTGACAAGGAGAAGGGCAGCTCCTGGCGAA
ACTGGCCAGGTGAGACAAAGGTACGGCCTCTGGAGCAGGAGTCTGTGCAGCCCCCAGGCC
CAGCAAGGCCACAGAGCTTGCCACAGGGCAAGGGCCGCAGCCGCCGGAGCCGCAACAAGC
AGGAGAAGTCAGCCTCCTCCTTGGACGATGTGTTCCTGCCTAAGGACATGGACGGGGCGG
AGATGGATGAGACTGACCGGGAGGTGGAGTACTTCAAGAGGTTCTGTTTGGATTCTGCAA
AGCAAACACGTCAGAAAGTTGCCGTGAACTGGACCAACTTCAGCCTCAAGAAAACCACTC
CCAGCACAGCTCAGTGAGCCCCTTCCAGATTGAGCTTCTTCAGGGTGTCCTGAGACCCCA
GTTGCCGGCTGAAGGTCTACAGTTTTTTCCTCAACATCCCCATCCACCTGCCCAAGACCC
TCCCCACCATCCCGGACCAACCAAAAGCTGAATAGATGCCGTGCATGCTGGGGCCCCTCG
GGACCTCTGCAGAGCCGCTTCCTGGTGCTACGCAGCCTCCACTCAGAGCCCGGGGACTGG
GCTGGCCTGTGGGCTTGGGGGCTGATGGTACTGTTGGCCCAACACTGCTCTCTTTGTGTT
TAGTTTTTTTGGGGTTTTTTTGTTTGTTTGTTTTTTCCAATTCTTTACTTTTGATACTGT
GAAGATCTTTCCTGCCGAAAGATAAAGCAACATTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGGGCTCCCCTCAGAACCATATATTACAAGCTCCAGGCGAGCCAGCCCCACCATGGG
CAGAAATGAGAAGTCCCCACCCACCATGGACAGAGGTGAGGGGCCCCCCTCCCGGTATCA
TCCCCGAGAATGGGCTAGTGAGGAGACTCAACACCGTGCCCAACCTGTCCCGGGTGATCT
GGGTCAAGACACCCAAGCCAGGCAACCCTAGCTCTGAGGAGCCAAGCCCACAGGAGGTCC
CCGGCTGCAAGCAGGAGTTGCCTGAGCCTTTGGCCTCAGGTGGGAAGCCGCGGAAGGGCA
AGAGACAGGGCAGTCAGGCCAAGAAGAGCGAGGTGAGCCCACCCCCCCAGTCCCCAGCCT
GCCTTGAGGCTCCCAGTGCCAAGGGCCAGACCCCCAGCCCCAAGCAGCCAGGCAAGGCCC
TGGAGCCTCCCAGAGTGGACAGCTGTGCCGAGGCTGGAGAGGGGAGCCGGGGGGCCCAAC
CAGGACCAGGCTGGGCTGGCAGCCCCAAAGCTGACAAGGAGAAGGGCAGCTCCTGGCGAA
ACTGGCCAGGTGAGACAAAGGTACGGCCTCTGGAGCAGGAGTCTGTGCAGCCCCCAGGCC
CAGCAAGGCCACAGAGCTTGCCACAGGGCAAGGGCCGCAGCCGCCGGAGCCGCAACAAGC
AGGAGAAGTCAGCCTCCTCCTTGGACGATGTGTTCCTGCCTAAGGACATGGACGGGGCGG
AGATGGATGAGACTGACCGGGAGGTGGAGTACTTCAAGAGGTTCTGTTTGGATTCTGCAA
AGCAAACACGTCAGAAAGTTGCCGTGAACTGGACCAACTTCAGCCTCAAGAAAACCACTC
CCAGCACAGCTCAGTGAGCCCCTTCCAGATTGAGCTTCTTCAGGGTGTCCTGAGACCCCA
GTTGCCGGCTGAAGGTCTACAGTTTTTTCCTCAACATCCCCATCCACCTGCCCAAGACCC
TCCCCACCATCCCGGACCAACCAAAAGCTGAATAGATGCCGTGCATGCTGGGGCCCCTCG
GGACCTCTGCAGAGCCGCTTCCTGGTGCTACGCAGCCTCCACTCAGAGCCCGGGGACTGG
GCTGGCCTGTGGGCTTGGGGGCTGATGGTACTGTTGGCCCAACACTGCTCTCTTTGTGTT
TAGTTTTTTTGGGGTTTTTTTGTTTGTTTGTTTTTTCCAATTCTTTACTTTTGATACTGT
GAAGATCTTTCCTGCCGAAAGATAAAGCAACATTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14250640|gb|AAH08784.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14250640|gb|AAH08784.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-684, + strand, RNAz p=0.963395

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-684, + strand, RNAz p=0.963395

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-684, gnl|bosTau2|chr7 (21799224-21798541)
               

               
               1-684, gnl|Hg17|chr5 (176884475-176883792)
               

               
               1-684, gnl|Mm7|chr13 (54631372-54630695)
               


               
               857-1236, gnl|bosTau2|chr7 (21795703-21795324)
               

               
               857-1236, gnl|Hg17|chr5 (176879790-176879404)
               

               
               857-1236, gnl|Mm7|chr13 (54627625-54627235)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr7 (21799224-21798541)
               

               
               1-684, gnl|Hg17|chr5 (176884475-176883792)
               

               
               1-684, gnl|Mm7|chr13 (54631372-54630695)
               


               
               857-1236, gnl|bosTau2|chr7 (21795703-21795324)
               

               
               857-1236, gnl|Hg17|chr5 (176879790-176879404)
               

               
               857-1236, gnl|Mm7|chr13 (54627625-54627235)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               pty (0.570858)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.570858)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	1-684, gnl\|bosTau2\|chr7 (21799224-21798541)
	1-684, gnl\|Hg17\|chr5 (176884475-176883792)
	1-684, gnl\|Mm7\|chr13 (54631372-54630695)

	857-1236, gnl\|bosTau2\|chr7 (21795703-21795324)
	857-1236, gnl\|Hg17\|chr5 (176879790-176879404)
	857-1236, gnl\|Mm7\|chr13 (54627625-54627235)

	pty (0.570858)
	nje (0.16592)
	lun (0.150489)
	che (0.136314)
	nmm (0.132802)
	ute (0.132784)
	ecc (0.115035)
	nbm (0.0993246)