Non-Coding RNA Search

Ss1.1-Ova1-OVR010011G01.5

Sequence:


               
               TTCCTCGCCTTTCCAAACTGCACAACCCAATGGACCGCACCGTGGTGCTCATCACCGGCT
GTTCCTCCGGCATCGGCCTGCACCTGGCCCTGCGTCTGGCATCTGACCCATCTCAGAGCT
TCAAAGTGTACGCCACCCTAAGGGACTTGACGGCACAAGGCCCGCTGTTGGAGGCTGCCC
AGGCCCGAGGGTGCCCCCCGGGCTCCCTGGAGACCTTGCAGCTGGATGTGAGGGATGCAG
ATTCAATAGCGGATGCCCGGGCACACGTGACCGAGGGACGCGTGGATGTGCTGGTGTGCA
ACGCAGGCCGGGGCCTGGTGGGGCCCCTGGAGGCACACAGGGAGGGCGCCGTGGACTCCG
TGCTGGATGTGAACCTGGCCGGCACCGTGCGGATGATGCAGGCCTTTCTGCCGGACATGA
AGCGGCGCCGCTCGGGTCGCATATTGGTGACCGGGAGCCTGGGAGGCCTGATAGGGCTTC
CCTTCAACGCTGTTTACTGCGCCAGCAAGTTTGCAATCGAAGGCTTATGCGAGAGTCTGG
CGGTTGTGCTGCAGAGCTTCGGGGTCCACGTGAGCGTCATCGAGTGCGGCCCGGTGCGTA
CTGCCTTCCCCGAGAAGCTGGAGGACGGCCTGGGCGGGATACTGGATCGCGCGGACGCCG
AGACCCGTGACCTCTTCTCCCGCTACCTGAGCCACTTCGAGCAGACGTTCCTTGAGGCGG
CGCAGGACCCGGAGGAGGTGGTCGAGGTCTTCCTCCAGGCTCTGCGCGCGCCGCGCCCGG
CTCTGCGCTACTTCACCACCGAGCACTTCCATCCCCTGATCAAGCTGCGCTTCTCCGACC
CCAGCAGCAGCAGCTACGTCGCAGCCGAGCACCAAAGAGTGTTCGGCGACCAGGCCACCG
AGGGCTTCGAGGGCACTGATTGCGGCGAGGCGGAGGCGGGAGCTGGAGACCTGGGGCCGT
CTGAGCTCGGCGCTCCTCTTGCCACCCCGCAATAAGGGCTTGGTCTGCCGCTGTCTCCCG
CACTCTCCTTTGCGGCCCGGAAGGTGTGCGGTTTAGGGATGGAAAGGGGCTCCTGACTGC
TCTGCACTTGCGCCTGCAGAGGGTGAGCCGTCAGGAAAGGTCGTGTTAGCCCGGGTTGTA
CCTACTGAAACCGAAGCCCAGAAAGGGAAGGAGCTTTGCCCAAGGTCACTCCTCGTCCTC
CACAGGGCAGGGAGAGTGGTCCTCGATCCCCAAGGGGTGTCTGCAGCAGGAGGCGCTAGT
CGGACTTGAGTGCGGGGAGAGTTGGCTTGTGACTTGGCTTCCACCAGTCATGGGACCTTA
GACAACGTCCTTACCCTCTGCTTTCTTATCTGTAAAATGGGTTTAATACCTATGTCATGG
ATTGTGGTAAGAATGAATTGAGATAATGCCAGAAAGTGCTGGTTTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTCGCCTTTCCAAACTGCACAACCCAATGGACCGCACCGTGGTGCTCATCACCGGCT
GTTCCTCCGGCATCGGCCTGCACCTGGCCCTGCGTCTGGCATCTGACCCATCTCAGAGCT
TCAAAGTGTACGCCACCCTAAGGGACTTGACGGCACAAGGCCCGCTGTTGGAGGCTGCCC
AGGCCCGAGGGTGCCCCCCGGGCTCCCTGGAGACCTTGCAGCTGGATGTGAGGGATGCAG
ATTCAATAGCGGATGCCCGGGCACACGTGACCGAGGGACGCGTGGATGTGCTGGTGTGCA
ACGCAGGCCGGGGCCTGGTGGGGCCCCTGGAGGCACACAGGGAGGGCGCCGTGGACTCCG
TGCTGGATGTGAACCTGGCCGGCACCGTGCGGATGATGCAGGCCTTTCTGCCGGACATGA
AGCGGCGCCGCTCGGGTCGCATATTGGTGACCGGGAGCCTGGGAGGCCTGATAGGGCTTC
CCTTCAACGCTGTTTACTGCGCCAGCAAGTTTGCAATCGAAGGCTTATGCGAGAGTCTGG
CGGTTGTGCTGCAGAGCTTCGGGGTCCACGTGAGCGTCATCGAGTGCGGCCCGGTGCGTA
CTGCCTTCCCCGAGAAGCTGGAGGACGGCCTGGGCGGGATACTGGATCGCGCGGACGCCG
AGACCCGTGACCTCTTCTCCCGCTACCTGAGCCACTTCGAGCAGACGTTCCTTGAGGCGG
CGCAGGACCCGGAGGAGGTGGTCGAGGTCTTCCTCCAGGCTCTGCGCGCGCCGCGCCCGG
CTCTGCGCTACTTCACCACCGAGCACTTCCATCCCCTGATCAAGCTGCGCTTCTCCGACC
CCAGCAGCAGCAGCTACGTCGCAGCCGAGCACCAAAGAGTGTTCGGCGACCAGGCCACCG
AGGGCTTCGAGGGCACTGATTGCGGCGAGGCGGAGGCGGGAGCTGGAGACCTGGGGCCGT
CTGAGCTCGGCGCTCCTCTTGCCACCCCGCAATAAGGGCTTGGTCTGCCGCTGTCTCCCG
CACTCTCCTTTGCGGCCCGGAAGGTGTGCGGTTTAGGGATGGAAAGGGGCTCCTGACTGC
TCTGCACTTGCGCCTGCAGAGGGTGAGCCGTCAGGAAAGGTCGTGTTAGCCCGGGTTGTA
CCTACTGAAACCGAAGCCCAGAAAGGGAAGGAGCTTTGCCCAAGGTCACTCCTCGTCCTC
CACAGGGCAGGGAGAGTGGTCCTCGATCCCCAAGGGGTGTCTGCAGCAGGAGGCGCTAGT
CGGACTTGAGTGCGGGGAGAGTTGGCTTGTGACTTGGCTTCCACCAGTCATGGGACCTTA
GACAACGTCCTTACCCTCTGCTTTCTTATCTGTAAAATGGGTTTAATACCTATGTCATGG
ATTGTGGTAAGAATGAATTGAGATAATGCCAGAAAGTGCTGGTTTGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17864970|gb|AAL47136.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17864970|gb|AAL47136.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               20-131, gnl|bosTau2|chr19 (38831373-38831263)
               

               
               20-131, gnl|Hg17|chr17 (37958469-37958578)
               

               
               20-131, gnl|Mm7|chr11 (101187463-101187581)
               


               
               294-475, gnl|bosTau2|chr19 (38830843-38830662)
               

               
               294-475, gnl|Hg17|chr17 (37958982-37959163)
               

               
               294-475, gnl|Mm7|chr11 (101187967-101188148)
               


               
               745-1375, gnl|bosTau2|chr19 (38829701-38829057)
               

               
               745-1375, gnl|Hg17|chr17 (37960211-37961134)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-131, gnl|bosTau2|chr19 (38831373-38831263)
               

               
               20-131, gnl|Hg17|chr17 (37958469-37958578)
               

               
               20-131, gnl|Mm7|chr11 (101187463-101187581)
               


               
               294-475, gnl|bosTau2|chr19 (38830843-38830662)
               

               
               294-475, gnl|Hg17|chr17 (37958982-37959163)
               

               
               294-475, gnl|Mm7|chr11 (101187967-101188148)
               


               
               745-1375, gnl|bosTau2|chr19 (38829701-38829057)
               

               
               745-1375, gnl|Hg17|chr17 (37960211-37961134)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lnt (0.142308)
               

               
               ova (0.129132)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               ova (0.129132)

	20-131, gnl\|bosTau2\|chr19 (38831373-38831263)
	20-131, gnl\|Hg17\|chr17 (37958469-37958578)
	20-131, gnl\|Mm7\|chr11 (101187463-101187581)

	294-475, gnl\|bosTau2\|chr19 (38830843-38830662)
	294-475, gnl\|Hg17\|chr17 (37958982-37959163)
	294-475, gnl\|Mm7\|chr11 (101187967-101188148)

	745-1375, gnl\|bosTau2\|chr19 (38829701-38829057)
	745-1375, gnl\|Hg17\|chr17 (37960211-37961134)