Ss1.1-Ova1-OVR010011H08.5
|
TTGCCTGCGCTTGATAAGAGCCAGCGGTCCTCTACGCACGCACCCCGCATCCAGTGAGAC
GCGCCGCGCACCGACGGAGCGGACATGGGCAGAGCGATGGTGGCCAGACTCGGACTGTGG
CTGCTGCTTCTGGCACTGCTCTTACCTACGCAGATTTATTCAAATCAAACAACTCTTGTA
ACAGTTTCAAGTAACTCCACCCACAGTACTTCGGCCGCCCCCAATCCAGCGAATGCCACC
ACCAAGGCAAGTGACGGTGCTCTGCAGTCCACAGCCAGTCTCTTCGTGCTCTCGGTCTCC
CTTCTACATCTCTACTGTTAAGAGACTCAGGCCAAGAAACATCTATTCTTCCCCATATTC
TAAACCCAAATCAAATGGCATCTAGACATCCAGTGTGACAAGGAAAAAAAAAAAAAAAAA
GAATCTTCATTCAATGAATCTGCTAATCCCACACCTAATTTTACTGACAGAGAATGTCGA
GGATCCCAAATTTTAATTGGTTTGAAGAGCATGTGAAGGGTTTGACTAGCTGATGAATGC
CATTATTAAATCTGCTGGAGTTTCCTGTACAAGATGAAGATCAACAACCTCCAAAATTAG
TTGAGATGATTTCCTTAAATGTGGCTTAAGAAGTATGGACCCATAAAACTCTACCTTGAA
AATGAGAATAGATTTTTATCTTAGAAAGAATGTGATGTGGAACAGAGATTCAGTTTTCAT
TTGGTTCATTAAATTTATAAGACCATAAAATAATTAGGTAATACAGAAAGTTTTCATGAT
TCTACTTATACGTACATTAGGAGGAACTTCCAAGTGTTACTGTACATCCCAAGTGTACTG
TTTTCAGCAGTACTGATTTAATACTGATGTACTCAAGATAATTTTATGATAAGCTCTCAC
TGTTCTCTTGGGAACTGAACTCTTTCCTCTGGGGCTTTGGGTTTGACATTGTGTTTGACT
GTTTATGTAGCAATGTGCCAGGGCAATGATGGATTGGAATGACCCTAAATCCAAGCATAA
TGAGTACATTTGGCTTATATACTTATCAATTATTCAATAAGAGTGCTAGATTCATTTAAC
TAAATGATAACCAAGAGTAGTACATTGATCTCAACTGATTTCAAAATGCTTTTTATTCCT
GCATATGTTGAGTACTTTTTAAAGTTTAAAAAAAAAGTGATCTGTTTTGAAGGTAAATTT
GACAAATCTTGAAATTAAAAAGGCAATCATGTGAATGAGCCAAACTGTAAATCAAATATT
TGGAAAGTGAAGACTGGAAGCTTGCTTATATTAAATTCAGAAAAACTTTTATACTCTTCT
CTGTAAATACTTTTTTTAAAAAAATTGAATCAGAATAGCCACATTTGGAACACTTTCTGT
TAACAGTCAATATTTTTAGATAGTTAGAACCTGGTCCTAAGCCTAAAGTGGACTTGATTT
TGGAAAGTAAATCTTTTCACGACTGCCTCAATGCAGAGAAACCTTTTTAAAACTAGACAC
TCCCTAAAGTCTTTTGTTCGCATGGTCACACACTGATGCTTAGATGTTCCAGAATTGAAT
ATGGCCACAGTAGTCTTGATAACCAAAGTCATTTCCCTCCCCCCTCCCCCGCCCGGATCT
TTAGAAACCTACACTGGAACAGCCACATCCAACAGATCTCAAGCTACTGTGTGTGTGAAT
GAACATTCCCTCTTGTTTCATACCTGAATGCTGTACATCTCTTTTGGATTGTATATTGTG
TTTGTGTATTTATGCTTTGATTCATAGTAACTTCTCATGTTATGGAATTGATTTGCATTA
AACACAAACTGTAAATAAAAAATGGCTGAAAGAGCAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTGCCTGCGCTTGATAAGAGCCAGCGGTCCTCTACGCACGCACCCCGCATCCAGTGAGAC
GCGCCGCGCACCGACGGAGCGGACATGGGCAGAGCGATGGTGGCCAGACTCGGACTGTGG
CTGCTGCTTCTGGCACTGCTCTTACCTACGCAGATTTATTCAAATCAAACAACTCTTGTA
ACAGTTTCAAGTAACTCCACCCACAGTACTTCGGCCGCCCCCAATCCAGCGAATGCCACC
ACCAAGGCAAGTGACGGTGCTCTGCAGTCCACAGCCAGTCTCTTCGTGCTCTCGGTCTCC
CTTCTACATCTCTACTGTTAAGAGACTCAGGCCAAGAAACATCTATTCTTCCCCATATTC
TAAACCCAAATCAAATGGCATCTAGACATCCAGTGTGACAAGGAAAAAAAAAAAAAAAAA
GAATCTTCATTCAATGAATCTGCTAATCCCACACCTAATTTTACTGACAGAGAATGTCGA
GGATCCCAAATTTTAATTGGTTTGAAGAGCATGTGAAGGGTTTGACTAGCTGATGAATGC
CATTATTAAATCTGCTGGAGTTTCCTGTACAAGATGAAGATCAACAACCTCCAAAATTAG
TTGAGATGATTTCCTTAAATGTGGCTTAAGAAGTATGGACCCATAAAACTCTACCTTGAA
AATGAGAATAGATTTTTATCTTAGAAAGAATGTGATGTGGAACAGAGATTCAGTTTTCAT
TTGGTTCATTAAATTTATAAGACCATAAAATAATTAGGTAATACAGAAAGTTTTCATGAT
TCTACTTATACGTACATTAGGAGGAACTTCCAAGTGTTACTGTACATCCCAAGTGTACTG
TTTTCAGCAGTACTGATTTAATACTGATGTACTCAAGATAATTTTATGATAAGCTCTCAC
TGTTCTCTTGGGAACTGAACTCTTTCCTCTGGGGCTTTGGGTTTGACATTGTGTTTGACT
GTTTATGTAGCAATGTGCCAGGGCAATGATGGATTGGAATGACCCTAAATCCAAGCATAA
TGAGTACATTTGGCTTATATACTTATCAATTATTCAATAAGAGTGCTAGATTCATTTAAC
TAAATGATAACCAAGAGTAGTACATTGATCTCAACTGATTTCAAAATGCTTTTTATTCCT
GCATATGTTGAGTACTTTTTAAAGTTTAAAAAAAAAGTGATCTGTTTTGAAGGTAAATTT
GACAAATCTTGAAATTAAAAAGGCAATCATGTGAATGAGCCAAACTGTAAATCAAATATT
TGGAAAGTGAAGACTGGAAGCTTGCTTATATTAAATTCAGAAAAACTTTTATACTCTTCT
CTGTAAATACTTTTTTTAAAAAAATTGAATCAGAATAGCCACATTTGGAACACTTTCTGT
TAACAGTCAATATTTTTAGATAGTTAGAACCTGGTCCTAAGCCTAAAGTGGACTTGATTT
TGGAAAGTAAATCTTTTCACGACTGCCTCAATGCAGAGAAACCTTTTTAAAACTAGACAC
TCCCTAAAGTCTTTTGTTCGCATGGTCACACACTGATGCTTAGATGTTCCAGAATTGAAT
ATGGCCACAGTAGTCTTGATAACCAAAGTCATTTCCCTCCCCCCTCCCCCGCCCGGATCT
TTAGAAACCTACACTGGAACAGCCACATCCAACAGATCTCAAGCTACTGTGTGTGTGAAT
GAACATTCCCTCTTGTTTCATACCTGAATGCTGTACATCTCTTTTGGATTGTATATTGTG
TTTGTGTATTTATGCTTTGATTCATAGTAACTTCTCATGTTATGGAATTGATTTGCATTA
AACACAAACTGTAAATAAAAAATGGCTGAAAGAGCAAAAAAAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
152-1851, gnl|bosTau2|chr2 (69918338-69920011) |
|
152-1851, gnl|Hg17|chrY (19542653-19540635) |
|
152-1851, gnl|Mm7|chr10 (43395902-43397570) |
| |
|
257-922, gnl|bosTau2|chr10 (30322949-30322300) |
|
257-922, gnl|Hg17|chr15 (62452814-62452240) |
| |
|
1420-1821, gnl|bosTau2|chr22 (45343155-45342783) |
|
1420-1821, gnl|canFam2|chr20 (9735723-9735482) |
|
1420-1821, gnl|dasNov1|scaffold_31356 (2704-2458) |
|
1420-1821, gnl|echTel1|scaffold_216243 (325-563) |
|
1420-1821, gnl|hg17|chr3 (11766051-11766291) |
|
1420-1821, gnl|Hg17|chr3 (11766753-11766057) |
|
1420-1821, gnl|loxAfr1|scaffold_39262 (7176-7422) |
|
1420-1821, gnl|mm7|chr6 (115006253-115006470) |
|
1420-1821, gnl|Mm7|chr6 (115006584-115006260) |
|
1420-1821, gnl|oryCun1|scaffold_128652 (5979-6206) |
|
1420-1821, gnl|panTro1|chr2 (12184239-12184479) |
|
1420-1821, gnl|rheMac2|chr2 (49297480-49297241) |
|
1420-1821, gnl|rn3|chr20 (47536347-47536103) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
152-1851, gnl|bosTau2|chr2 (69918338-69920011) |
|
152-1851, gnl|Hg17|chrY (19542653-19540635) |
|
152-1851, gnl|Mm7|chr10 (43395902-43397570) |
| |
|
257-922, gnl|bosTau2|chr10 (30322949-30322300) |
|
257-922, gnl|Hg17|chr15 (62452814-62452240) |
| |
|
1420-1821, gnl|bosTau2|chr22 (45343155-45342783) |
|
1420-1821, gnl|canFam2|chr20 (9735723-9735482) |
|
1420-1821, gnl|dasNov1|scaffold_31356 (2704-2458) |
|
1420-1821, gnl|echTel1|scaffold_216243 (325-563) |
|
1420-1821, gnl|hg17|chr3 (11766051-11766291) |
|
1420-1821, gnl|Hg17|chr3 (11766753-11766057) |
|
1420-1821, gnl|loxAfr1|scaffold_39262 (7176-7422) |
|
1420-1821, gnl|mm7|chr6 (115006253-115006470) |
|
1420-1821, gnl|Mm7|chr6 (115006584-115006260) |
|
1420-1821, gnl|oryCun1|scaffold_128652 (5979-6206) |
|
1420-1821, gnl|panTro1|chr2 (12184239-12184479) |
|
1420-1821, gnl|rheMac2|chr2 (49297480-49297241) |
|
1420-1821, gnl|rn3|chr20 (47536347-47536103) |
|
ece (2.06375) |
|
ute (1.85898) |
|
ecc (1.49546) |
|
mgp (1.38408) |
|
mcp (1.36519) |
|
duo (1.20961) |
|
cty (1.0408) |
|
lin (1.01922) |
|
sto (0.899119) |
|
eye (0.852515) |
|
nco (0.808669) |
|
cbl (0.803582) |
|
lyg (0.798616) |
|
mgm (0.721371) |
|
sin (0.69979) |
|
rec (0.692281) |
|
jej (0.593531) |
|
ebs (0.591506) |
|
col (0.585023) |
|
sag (0.548145) |
|
pla (0.534688) |
|
pro (0.512033) |
|
mga (0.480615) |
|
pan (0.471921) |
|
amn (0.417711) |
|
cut (0.339847) |
|
nje (0.33184) |
|
pty (0.285429) |
|
ret (0.257467) |
|
spc (0.226732) |
|
tes (0.207814) |
|
eje (0.197668) |
|
nlu (0.191681) |
|
ill (0.175593) |
|
fhi (0.169578) |
|
csp (0.161186) |
|
cst (0.140036) |
|
nca (0.136874) |
|
kid (0.129735) |
|
ova (0.129132) |
|
sug (0.127291) |
|
bla (0.124347) |
|
tra (0.123092) |
|
eep (0.122564) |
|
nbm (0.0993246) |
|
ece (2.06375) |
|
ute (1.85898) |
|
ecc (1.49546) |
|
mgp (1.38408) |
|
mcp (1.36519) |
|
duo (1.20961) |
|
cty (1.0408) |
|
lin (1.01922) |
|
sto (0.899119) |
|
eye (0.852515) |
|
nco (0.808669) |
|
cbl (0.803582) |
|
lyg (0.798616) |
|
mgm (0.721371) |
|
sin (0.69979) |
|
rec (0.692281) |
|
jej (0.593531) |
|
ebs (0.591506) |
|
col (0.585023) |
|
sag (0.548145) |
|
pla (0.534688) |
|
pro (0.512033) |
|
mga (0.480615) |
|
pan (0.471921) |
|
amn (0.417711) |
|
cut (0.339847) |
|
nje (0.33184) |
|
pty (0.285429) |
|
ret (0.257467) |
|
spc (0.226732) |
|
tes (0.207814) |
|
eje (0.197668) |
|
nlu (0.191681) |
|
ill (0.175593) |
|
fhi (0.169578) |
|
csp (0.161186) |
|
cst (0.140036) |
|
nca (0.136874) |
|
kid (0.129735) |
|
ova (0.129132) |
|
sug (0.127291) |
|
bla (0.124347) |
|
tra (0.123092) |
|
eep (0.122564) |
|
nbm (0.0993246) |
