Ss1.1-Ova1-OVR010012B08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTCGTCTCCGGTCCCGCATTGCATCGGATCGCGAGGTGGTGGGGCGCGTCAGAGAGGCG CCTGCTGCCCAACAGCTCGCGTTCGTGTAAGCTTCGGGCTCACCAAAAACGGAGGAAGCC CCGGGCCTCCCGGCTGCGAGAACCCCGGGCCGAGAGCATCCGCCTGCCGAGGACGGGCGG GGCCTCGAGAGAGCGCTCTCCGAACTGACCTCGGAAACCGACGTGCCCGTTGTGTTTGTG AAGCGGCGAAAGATAGGCGGCCATGGTCAAACCCTGAAGGCTTATCAGGAGGGCAGACTT CAAAAGCTACTGAAAATGAATGGTGCTGAGGAGCTTCCCGAGATGTATGACTATGACCTC ATCATCATTGGAGGGGGCTCAGGAGGCCTGGCGGCTGCTAAGGAAGCAGCCAGATTTAAC AAGCGGGTCATGGTCCTGGATTTTGTCACTCCAACCCCTCTCGGAACTAGATGGGGTCTC GGAGGAACGTGTGTGAATGTAGGTTGCATACCTAAAAAACTGATGCACCAAGCAGCTTTG TTAGGACAAGCCCTACGAGACTCTCGAAACTATGGGTGGAACGTCGAGGAGACGATTAAA CACGACTGGGAAAGAATGACAGAAGCTGTGCAGAATCACATTGGCTCTCTGAACTGGGGC TACCGCGTGGCTCTGCGGGAGAAAAAAGTCACTTATGAGAATGCCTATGGGCAGTTTGTT GGGCCTCACAGAATTAAGGCAACAAATAACAAAGGCAAAGAAAAAATTTATTCAGCAGAG AAATTTCTCATTGCCACTGGTGAAAGGCCACGCTATTTGGGTATCCCTGGTGACAAAGAG TACTGCATCAGCAGTGATGATCTTTTCTCTTTACCTTATTGCCCGGGTAAGACCCTGGTG GTCGGAGCATCCTATGTCGCTTTGGAATGTGCTGGATTTCTTGCCGGCATCGGTTTAGAT GTCACTGTTATGGTACGGTCCATTCTCCTGAGAGGATTTGACCAGGACATGGCCAACAAA ATCGGTGAACATATGGAAGAACACGGTGTCAAGTTTATAAGACAGTTTGTACCAATAAAA GTTGAACAAATCGAAGCGGGGATGCCAGGCCGACTCAGGGTGACAGCTAAGGCCACTAAC AGTGACGAAACCATCGAAGGAGAGTATAATACGGTATTGCTGGCACAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTCGTCTCCGGTCCCGCATTGCATCGGATCGCGAGGTGGTGGGGCGCGTCAGAGAGGCG CCTGCTGCCCAACAGCTCGCGTTCGTGTAAGCTTCGGGCTCACCAAAAACGGAGGAAGCC CCGGGCCTCCCGGCTGCGAGAACCCCGGGCCGAGAGCATCCGCCTGCCGAGGACGGGCGG GGCCTCGAGAGAGCGCTCTCCGAACTGACCTCGGAAACCGACGTGCCCGTTGTGTTTGTG AAGCGGCGAAAGATAGGCGGCCATGGTCAAACCCTGAAGGCTTATCAGGAGGGCAGACTT CAAAAGCTACTGAAAATGAATGGTGCTGAGGAGCTTCCCGAGATGTATGACTATGACCTC ATCATCATTGGAGGGGGCTCAGGAGGCCTGGCGGCTGCTAAGGAAGCAGCCAGATTTAAC AAGCGGGTCATGGTCCTGGATTTTGTCACTCCAACCCCTCTCGGAACTAGATGGGGTCTC GGAGGAACGTGTGTGAATGTAGGTTGCATACCTAAAAAACTGATGCACCAAGCAGCTTTG TTAGGACAAGCCCTACGAGACTCTCGAAACTATGGGTGGAACGTCGAGGAGACGATTAAA CACGACTGGGAAAGAATGACAGAAGCTGTGCAGAATCACATTGGCTCTCTGAACTGGGGC TACCGCGTGGCTCTGCGGGAGAAAAAAGTCACTTATGAGAATGCCTATGGGCAGTTTGTT GGGCCTCACAGAATTAAGGCAACAAATAACAAAGGCAAAGAAAAAATTTATTCAGCAGAG AAATTTCTCATTGCCACTGGTGAAAGGCCACGCTATTTGGGTATCCCTGGTGACAAAGAG TACTGCATCAGCAGTGATGATCTTTTCTCTTTACCTTATTGCCCGGGTAAGACCCTGGTG GTCGGAGCATCCTATGTCGCTTTGGAATGTGCTGGATTTCTTGCCGGCATCGGTTTAGAT GTCACTGTTATGGTACGGTCCATTCTCCTGAGAGGATTTGACCAGGACATGGCCAACAAA ATCGGTGAACATATGGAAGAACACGGTGTCAAGTTTATAAGACAGTTTGTACCAATAAAA GTTGAACAAATCGAAGCGGGGATGCCAGGCCGACTCAGGGTGACAGCTAAGGCCACTAAC AGTGACGAAACCATCGAAGGAGAGTATAATACGGTATTGCTGGCACAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 852-967, + strand, RNAz p=0.812869 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 852-967, + strand, RNAz p=0.812869 |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 7-169, gnl|bosTau2|chr2 (19704255-19704093) | |
| 7-169, gnl|Hg17|chr12 (103183273-103183428) | |
| 7-169, gnl|Mm7|chr10 (82400718-82400895) | |
| 278-403, gnl|bosTau2|chr2 (19681136-19681011) | |
| 278-403, gnl|canFam2|chr10 (37072702-37072600) | |
| 278-403, gnl|danRer3|chrNA (185503934-185504014) | |
| 278-403, gnl|dasNov1|scaffold_43550 (2032-2137) | |
| 278-403, gnl|echTel1|scaffold_288784 (15636-15738) | |
| 278-403, gnl|fr1|chrUn (102118938-102118852) | |
| 278-403, gnl|galGal2|chr1 (51315828-51315726) | |
| 278-403, gnl|hg17|chr12 (103207519-103207621) | |
| 278-403, gnl|Hg17|chr12 (103207533-103207658) | |
| 278-403, gnl|loxAfr1|scaffold_190159 (394-287) | |
| 278-403, gnl|mm7|chr10 (82416102-82416205) | |
| 278-403, gnl|Mm7|chr10 (82416117-82416242) | |
| 278-403, gnl|monDom2|scaffold_34 (8939702-8939599) | |
| 278-403, gnl|oryCun1|scaffold_202308 (101552-101450) | |
| 278-403, gnl|panTro1|chr10 (105685531-105685633) | |
| 278-403, gnl|rn3|chr7 (23098916-23098814) | |
| 278-403, gnl|tetNig1|chr11 (10337914-10337838) | |
| 278-403, gnl|xenTro1|scaffold_434 (438070-438179) | |
| 475-593, gnl|bosTau2|chr2 (19678266-19678148) | |
| 475-593, gnl|canFam2|chr10 (37068911-37068765) | |
| 475-593, gnl|danRer3|chrNA (185506464-185506609) | |
| 475-593, gnl|dasNov1|scaffold_43550 (5885-6033) | |
| 475-593, gnl|echTel1|scaffold_109411 (470-613) | |
| 475-593, gnl|fr1|chrUn (102118497-102118368) | |
| 475-593, gnl|galGal2|chr1 (51312204-51312063) | |
| 475-593, gnl|hg17|chr12 (103212021-103212168) | |
| 475-593, gnl|Hg17|chr12 (103212021-103212139) | |
| 475-593, gnl|loxAfr1|scaffold_7064 (2963-2821) | |
| 475-593, gnl|mm7|chr10 (82418771-82418906) | |
| 475-593, gnl|Mm7|chr10 (82418771-82418889) | |
| 475-593, gnl|monDom2|scaffold_34 (8929910-8929770) | |
| 475-593, gnl|oryCun1|scaffold_62955 (741-887) | |
| 475-593, gnl|panTro1|chr10 (105690071-105690218) | |
| 475-593, gnl|rheMac2|chr10 (63971676-63971567) | |
| 475-593, gnl|rn3|chr7 (23095314-23095173) | |
| 475-593, gnl|tetNig1|chr11 (10337483-10337349) | |
| 475-593, gnl|xenTro1|scaffold_434 (440143-440290) | |
| 596-742, gnl|bosTau2|chr2 (19668953-19668807) | |
| 596-742, gnl|canFam2|chr10 (37063809-37063625) | |
| 596-742, gnl|danRer3|chrNA (185507074-185507250) | |
| 596-742, gnl|dasNov1|scaffold_43550 (7605-7788) | |
| 596-742, gnl|echTel1|scaffold_256071 (535-367) | |
| 596-742, gnl|fr1|chrUn (102118312-102118151) | |
| 596-742, gnl|galGal2|chr1 (51311290-51311106) | |
| 596-742, gnl|hg17|chr12 (103215139-103215326) | |
| 596-742, gnl|Hg17|chr12 (103215158-103215304) | |
| 596-742, gnl|loxAfr1|scaffold_18085 (17007-16840) | |
| 596-742, gnl|mm7|chr10 (82420701-82420868) | |
| 596-742, gnl|Mm7|chr10 (82420712-82420858) | |
| 596-742, gnl|monDom2|scaffold_34 (8927007-8926833) | |
| 596-742, gnl|oryCun1|scaffold_214497 (11017-10850) | |
| 596-742, gnl|panTro1|chr10 (105693189-105693376) | |
| 596-742, gnl|rheMac2|chr2 (46398643-46398473) | |
| 596-742, gnl|rn3|chr7 (23093385-23093218) | |
| 596-742, gnl|tetNig1|chr11 (10337297-10337137) | |
| 596-742, gnl|xenTro1|scaffold_434 (441702-441875) | |
| 852-1082, gnl|bosTau2|chr2 (19666912-19666682) | |
| 852-1082, gnl|Hg17|chr12 (103217330-103217563) | |
| 852-1082, gnl|Mm7|chr10 (82423226-82423456) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-169, gnl|bosTau2|chr2 (19704255-19704093) | |
| 7-169, gnl|Hg17|chr12 (103183273-103183428) | |
| 7-169, gnl|Mm7|chr10 (82400718-82400895) | |
| 278-403, gnl|bosTau2|chr2 (19681136-19681011) | |
| 278-403, gnl|canFam2|chr10 (37072702-37072600) | |
| 278-403, gnl|danRer3|chrNA (185503934-185504014) | |
| 278-403, gnl|dasNov1|scaffold_43550 (2032-2137) | |
| 278-403, gnl|echTel1|scaffold_288784 (15636-15738) | |
| 278-403, gnl|fr1|chrUn (102118938-102118852) | |
| 278-403, gnl|galGal2|chr1 (51315828-51315726) | |
| 278-403, gnl|hg17|chr12 (103207519-103207621) | |
| 278-403, gnl|Hg17|chr12 (103207533-103207658) | |
| 278-403, gnl|loxAfr1|scaffold_190159 (394-287) | |
| 278-403, gnl|mm7|chr10 (82416102-82416205) | |
| 278-403, gnl|Mm7|chr10 (82416117-82416242) | |
| 278-403, gnl|monDom2|scaffold_34 (8939702-8939599) | |
| 278-403, gnl|oryCun1|scaffold_202308 (101552-101450) | |
| 278-403, gnl|panTro1|chr10 (105685531-105685633) | |
| 278-403, gnl|rn3|chr7 (23098916-23098814) | |
| 278-403, gnl|tetNig1|chr11 (10337914-10337838) | |
| 278-403, gnl|xenTro1|scaffold_434 (438070-438179) | |
| 475-593, gnl|bosTau2|chr2 (19678266-19678148) | |
| 475-593, gnl|canFam2|chr10 (37068911-37068765) | |
| 475-593, gnl|danRer3|chrNA (185506464-185506609) | |
| 475-593, gnl|dasNov1|scaffold_43550 (5885-6033) | |
| 475-593, gnl|echTel1|scaffold_109411 (470-613) | |
| 475-593, gnl|fr1|chrUn (102118497-102118368) | |
| 475-593, gnl|galGal2|chr1 (51312204-51312063) | |
| 475-593, gnl|hg17|chr12 (103212021-103212168) | |
| 475-593, gnl|Hg17|chr12 (103212021-103212139) | |
| 475-593, gnl|loxAfr1|scaffold_7064 (2963-2821) | |
| 475-593, gnl|mm7|chr10 (82418771-82418906) | |
| 475-593, gnl|Mm7|chr10 (82418771-82418889) | |
| 475-593, gnl|monDom2|scaffold_34 (8929910-8929770) | |
| 475-593, gnl|oryCun1|scaffold_62955 (741-887) | |
| 475-593, gnl|panTro1|chr10 (105690071-105690218) | |
| 475-593, gnl|rheMac2|chr10 (63971676-63971567) | |
| 475-593, gnl|rn3|chr7 (23095314-23095173) | |
| 475-593, gnl|tetNig1|chr11 (10337483-10337349) | |
| 475-593, gnl|xenTro1|scaffold_434 (440143-440290) | |
| 596-742, gnl|bosTau2|chr2 (19668953-19668807) | |
| 596-742, gnl|canFam2|chr10 (37063809-37063625) | |
| 596-742, gnl|danRer3|chrNA (185507074-185507250) | |
| 596-742, gnl|dasNov1|scaffold_43550 (7605-7788) | |
| 596-742, gnl|echTel1|scaffold_256071 (535-367) | |
| 596-742, gnl|fr1|chrUn (102118312-102118151) | |
| 596-742, gnl|galGal2|chr1 (51311290-51311106) | |
| 596-742, gnl|hg17|chr12 (103215139-103215326) | |
| 596-742, gnl|Hg17|chr12 (103215158-103215304) | |
| 596-742, gnl|loxAfr1|scaffold_18085 (17007-16840) | |
| 596-742, gnl|mm7|chr10 (82420701-82420868) | |
| 596-742, gnl|Mm7|chr10 (82420712-82420858) | |
| 596-742, gnl|monDom2|scaffold_34 (8927007-8926833) | |
| 596-742, gnl|oryCun1|scaffold_214497 (11017-10850) | |
| 596-742, gnl|panTro1|chr10 (105693189-105693376) | |
| 596-742, gnl|rheMac2|chr2 (46398643-46398473) | |
| 596-742, gnl|rn3|chr7 (23093385-23093218) | |
| 596-742, gnl|tetNig1|chr11 (10337297-10337137) | |
| 596-742, gnl|xenTro1|scaffold_434 (441702-441875) | |
| 852-1082, gnl|bosTau2|chr2 (19666912-19666682) | |
| 852-1082, gnl|Hg17|chr12 (103217330-103217563) | |
| 852-1082, gnl|Mm7|chr10 (82423226-82423456) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.165235) | |
| eep (0.122564) |