Ss1.1-Ova1-OVR010012B09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGCAGCTACGCGGCCTCCAGGCCTCTGGCTTCCGAACCTCTGGGCTCTGTACCAGCCGC GCTCGCTTTCCGCACCATGTCCTTGCGGACGCTACCGCTGCTCTTCTTGAACTTGGGCGG GGAGATGCTTTACATCCTGGACCATAGGCTGCGGGCCCAGAACATCCCGGGAGACAAGGC CCGGAAAGTTCTGAATGACATCATCTCAACCATGTTCAATCGAAAGTTTATAGAGGAATT GTTCAAACCCCAAGAGCTCTACTCCAAGAAGGCGCTGAGGACAGTCTACGACCGCCTGGC CCATGCCTCCATCATGAGACTGAACCAGGCCAGCATGGATAAGCTCTATGACCTGATGAC GATGGCTTTCAAATATCAAGTATTGCTGTGTCCTCGTCCCAAGGATGTGTTGCTGGTCAC TTTCAATCATTTGGATGCCATCAAGGGATTCATCCAAGACTCCCCAACCATCCTGCACCA AGTGGATGAGACTTTCCGGCAGCTGACGGAAACATACGGGAGTCTCTCTGCGGGGGAGTT CCAGCTGATCCGGCAGATGCTCCTCATCTTTTTCCAGGACCTGCACATCCGGGTATCCAT ATTTCTAAAGGACAAAGTTCAGAATTCTAATGGTCGCTTTGTATTGCCAGTGTCTGGGCC TGTCCCCTGGGGAACTGAAGTTCCCGGACTCATCAGAATGTTCAACCACAAAGGCGAAGA AGTGAGGAAGGCAGAATTCAAGCACGGTGGAAGCTATGTTGCTGCCCCCAAAGAAGGGTC TTTTGAACTTTATGGAGACCGAGTCCTGAAACTGGGAACTAACATGTACAGTGTGAACCG GCCCGTGGAAACCCATATGTCCGGAGCATCGAAGAACGCAGCTGCACGGACGCAAGAATA CACTGCTCCAAACCCTCTTGCTAAAGAAGAGCTGAATCTCTTGGCCAGGCTGATGGGAGG GATGGAAATTAAGAAACCCTGTGGCCCTGAGTCAGGATTCCGGTTGAATCTCTTCACCAC TGATGAAGAGGAGGAACAAGCAGCGCTATCCAGGCCAGAAGAGTTATCCTATGAAGTTAT CAACATCCAAGCTACTCAGGACCAGCAGAGGAACGAAGAGCTGGCTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGCAGCTACGCGGCCTCCAGGCCTCTGGCTTCCGAACCTCTGGGCTCTGTACCAGCCGC GCTCGCTTTCCGCACCATGTCCTTGCGGACGCTACCGCTGCTCTTCTTGAACTTGGGCGG GGAGATGCTTTACATCCTGGACCATAGGCTGCGGGCCCAGAACATCCCGGGAGACAAGGC CCGGAAAGTTCTGAATGACATCATCTCAACCATGTTCAATCGAAAGTTTATAGAGGAATT GTTCAAACCCCAAGAGCTCTACTCCAAGAAGGCGCTGAGGACAGTCTACGACCGCCTGGC CCATGCCTCCATCATGAGACTGAACCAGGCCAGCATGGATAAGCTCTATGACCTGATGAC GATGGCTTTCAAATATCAAGTATTGCTGTGTCCTCGTCCCAAGGATGTGTTGCTGGTCAC TTTCAATCATTTGGATGCCATCAAGGGATTCATCCAAGACTCCCCAACCATCCTGCACCA AGTGGATGAGACTTTCCGGCAGCTGACGGAAACATACGGGAGTCTCTCTGCGGGGGAGTT CCAGCTGATCCGGCAGATGCTCCTCATCTTTTTCCAGGACCTGCACATCCGGGTATCCAT ATTTCTAAAGGACAAAGTTCAGAATTCTAATGGTCGCTTTGTATTGCCAGTGTCTGGGCC TGTCCCCTGGGGAACTGAAGTTCCCGGACTCATCAGAATGTTCAACCACAAAGGCGAAGA AGTGAGGAAGGCAGAATTCAAGCACGGTGGAAGCTATGTTGCTGCCCCCAAAGAAGGGTC TTTTGAACTTTATGGAGACCGAGTCCTGAAACTGGGAACTAACATGTACAGTGTGAACCG GCCCGTGGAAACCCATATGTCCGGAGCATCGAAGAACGCAGCTGCACGGACGCAAGAATA CACTGCTCCAAACCCTCTTGCTAAAGAAGAGCTGAATCTCTTGGCCAGGCTGATGGGAGG GATGGAAATTAAGAAACCCTGTGGCCCTGAGTCAGGATTCCGGTTGAATCTCTTCACCAC TGATGAAGAGGAGGAACAAGCAGCGCTATCCAGGCCAGAAGAGTTATCCTATGAAGTTAT CAACATCCAAGCTACTCAGGACCAGCAGAGGAACGAAGAGCTGGCTCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-115, - strand, RNAz p=0.99167 | |
| 1-118, - strand, RNAz p=0.968463 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-115, - strand, RNAz p=0.99167 | |
| 1-118, - strand, RNAz p=0.968463 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 1-188, gnl|bosTau2|chr3 (76510738-76510926) | |
| 1-188, gnl|danRer3|chr21 (30306348-30306467) | |
| 1-188, gnl|fr1|chrUn (99326333-99326211) | |
| 1-188, gnl|galGal2|chr23 (3556799-3556661) | |
| 1-188, gnl|hg17|chr1 (36584935-36585068) | |
| 1-188, gnl|Hg17|chr1 (36585139-36584952) | |
| 1-188, gnl|loxAfr1|scaffold_35437 (429-296) | |
| 1-188, gnl|mm7|chr4 (125503472-125503325) | |
| 1-188, gnl|Mm7|chr4 (125503253-125503439) | |
| 1-188, gnl|monDom2|scaffold_43 (13733577-13733444) | |
| 1-188, gnl|panTro1|chr1 (37415394-37415527) | |
| 1-188, gnl|rheMac2|chr1 (39314146-39314279) | |
| 1-188, gnl|rn3|chr5 (145420970-145420825) | |
| 1-188, gnl|tetNig1|chrUn_random (30807548-30807665) | |
| 1-188, gnl|xenTro1|scaffold_523 (857661-857537) | |
| 342-510, gnl|bosTau2|chr3 (76526264-76526432) | |
| 342-510, gnl|Hg17|chr1 (36567285-36567117) | |
| 342-510, gnl|Mm7|chr4 (125521362-125521530) | |
| 695-828, gnl|bosTau2|chr3 (76535848-76535981) | |
| 695-828, gnl|canFam2|chr15 (8880718-8880574) | |
| 695-828, gnl|danRer3|chrNA (14740461-14740319) | |
| 695-828, gnl|fr1|chrUn (99328926-99328791) | |
| 695-828, gnl|galGal2|chr23 (3563640-3563496) | |
| 695-828, gnl|hg17|chr1 (36557454-36557598) | |
| 695-828, gnl|Hg17|chr1 (36557592-36557459) | |
| 695-828, gnl|mm7|chr4 (125528381-125528237) | |
| 695-828, gnl|Mm7|chr4 (125528241-125528374) | |
| 695-828, gnl|monDom2|scaffold_43 (13757703-13757559) | |
| 695-828, gnl|oryCun1|scaffold_164174 (2396-2252) | |
| 695-828, gnl|rheMac2|chr1 (39287893-39288037) | |
| 695-828, gnl|rn3|chr5 (145445499-145445355) | |
| 695-828, gnl|tetNig1|chrUn_random (30805370-30805514) | |
| 695-828, gnl|xenTro1|scaffold_523 (870105-869962) | |
| 892-1035, gnl|bosTau2|chr3 (76538086-76538229) | |
| 892-1035, gnl|canFam2|chr15 (8883526-8883362) | |
| 892-1035, gnl|danRer3|chrNA (14741042-14740878) | |
| 892-1035, gnl|dasNov1|scaffold_25461 (3813-3977) | |
| 892-1035, gnl|echTel1|scaffold_317381 (79407-79571) | |
| 892-1035, gnl|fr1|chrUn (99329372-99329200) | |
| 892-1035, gnl|galGal2|chr23 (3565076-3564918) | |
| 892-1035, gnl|hg17|chr1 (36555154-36555318) | |
| 892-1035, gnl|Hg17|chr1 (36555313-36555170) | |
| 892-1035, gnl|loxAfr1|scaffold_20801 (50295-50459) | |
| 892-1035, gnl|mm7|chr4 (125531347-125531183) | |
| 892-1035, gnl|Mm7|chr4 (125531186-125531329) | |
| 892-1035, gnl|monDom2|scaffold_43 (13760342-13760178) | |
| 892-1035, gnl|oryCun1|scaffold_198624 (131662-131826) | |
| 892-1035, gnl|rheMac2|chr1 (39285758-39285922) | |
| 892-1035, gnl|rn3|chr5 (145449281-145449117) | |
| 892-1035, gnl|tetNig1|chrUn_random (30805060-30805204) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-188, gnl|bosTau2|chr3 (76510738-76510926) | |
| 1-188, gnl|danRer3|chr21 (30306348-30306467) | |
| 1-188, gnl|fr1|chrUn (99326333-99326211) | |
| 1-188, gnl|galGal2|chr23 (3556799-3556661) | |
| 1-188, gnl|hg17|chr1 (36584935-36585068) | |
| 1-188, gnl|Hg17|chr1 (36585139-36584952) | |
| 1-188, gnl|loxAfr1|scaffold_35437 (429-296) | |
| 1-188, gnl|mm7|chr4 (125503472-125503325) | |
| 1-188, gnl|Mm7|chr4 (125503253-125503439) | |
| 1-188, gnl|monDom2|scaffold_43 (13733577-13733444) | |
| 1-188, gnl|panTro1|chr1 (37415394-37415527) | |
| 1-188, gnl|rheMac2|chr1 (39314146-39314279) | |
| 1-188, gnl|rn3|chr5 (145420970-145420825) | |
| 1-188, gnl|tetNig1|chrUn_random (30807548-30807665) | |
| 1-188, gnl|xenTro1|scaffold_523 (857661-857537) | |
| 342-510, gnl|bosTau2|chr3 (76526264-76526432) | |
| 342-510, gnl|Hg17|chr1 (36567285-36567117) | |
| 342-510, gnl|Mm7|chr4 (125521362-125521530) | |
| 695-828, gnl|bosTau2|chr3 (76535848-76535981) | |
| 695-828, gnl|canFam2|chr15 (8880718-8880574) | |
| 695-828, gnl|danRer3|chrNA (14740461-14740319) | |
| 695-828, gnl|fr1|chrUn (99328926-99328791) | |
| 695-828, gnl|galGal2|chr23 (3563640-3563496) | |
| 695-828, gnl|hg17|chr1 (36557454-36557598) | |
| 695-828, gnl|Hg17|chr1 (36557592-36557459) | |
| 695-828, gnl|mm7|chr4 (125528381-125528237) | |
| 695-828, gnl|Mm7|chr4 (125528241-125528374) | |
| 695-828, gnl|monDom2|scaffold_43 (13757703-13757559) | |
| 695-828, gnl|oryCun1|scaffold_164174 (2396-2252) | |
| 695-828, gnl|rheMac2|chr1 (39287893-39288037) | |
| 695-828, gnl|rn3|chr5 (145445499-145445355) | |
| 695-828, gnl|tetNig1|chrUn_random (30805370-30805514) | |
| 695-828, gnl|xenTro1|scaffold_523 (870105-869962) | |
| 892-1035, gnl|bosTau2|chr3 (76538086-76538229) | |
| 892-1035, gnl|canFam2|chr15 (8883526-8883362) | |
| 892-1035, gnl|danRer3|chrNA (14741042-14740878) | |
| 892-1035, gnl|dasNov1|scaffold_25461 (3813-3977) | |
| 892-1035, gnl|echTel1|scaffold_317381 (79407-79571) | |
| 892-1035, gnl|fr1|chrUn (99329372-99329200) | |
| 892-1035, gnl|galGal2|chr23 (3565076-3564918) | |
| 892-1035, gnl|hg17|chr1 (36555154-36555318) | |
| 892-1035, gnl|Hg17|chr1 (36555313-36555170) | |
| 892-1035, gnl|loxAfr1|scaffold_20801 (50295-50459) | |
| 892-1035, gnl|mm7|chr4 (125531347-125531183) | |
| 892-1035, gnl|Mm7|chr4 (125531186-125531329) | |
| 892-1035, gnl|monDom2|scaffold_43 (13760342-13760178) | |
| 892-1035, gnl|oryCun1|scaffold_198624 (131662-131826) | |
| 892-1035, gnl|rheMac2|chr1 (39285758-39285922) | |
| 892-1035, gnl|rn3|chr5 (145449281-145449117) | |
| 892-1035, gnl|tetNig1|chrUn_random (30805060-30805204) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| clu (0.239292) | |
| ece (0.229305) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ebs (0.118301) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.239292) | |
| ece (0.229305) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ebs (0.118301) |