Ss1.1-Ova1-OVR010013G09.5
|
TGATTATGACAGCAGCACCATCCGGAAGAGGATATTTCAAGAGGCGCTGGTTCAAATCAC
ACTTCCCACCATGCAGAAGGCGCTGGCGTCCATGTGTAAACCAGAACTTCAGAAATACGA
GCAGTTCATTTTTGCAGATCACACCCATATGATCCACGTTGAGAATGTCTACGAGGAGAT
TTTACATCAGATCCTCCTTGATGAAACCCTGAAAGTGATAAAGGAAGCTGCTGTCCTGAA
GAAACACAACTTATTTGAAGACAACATGGCCCTGCCCAGCGAAAGCGTGTCCAGCTTAAC
TGATCTAAAAACTCCTGCAGGGTCCAACCAGGCCAGCCCTGCCAGGAGAGCCTCTGCCAT
TCTGCCAGGCGGTCCAGATAGTGAGATCGTGAGTAATGAGGTATTCCAGGAGTCAGGGGA
AAAGAAGGAGTCTGGGGTCTCCAGTTCTTTGGCCAAAGGAGAAAGCCTTCCTTCCCCTGT
GCCCAGCCCTCCCCCAGGCGGGGACGGGCAGCTCATCATTTCAAGCATGGATGACCCTGC
TGTGAATCTTGTGGCTGCAGAGGACACAGCAGGAGACCTGGGCACACACTCATCAGAGCT
GGAGTGTGAGGAGACTCCTGAGGACCAAGAACCCCCCCAGGAAAAGCCCGAGCCCACCTC
TGCCTCAGGCTCCTTGAAGGAACTCAGAGACCTGTTGACAGTGACCATTGAAGTACCAGC
GGAGTCTGGCAAGCTCAAGATTGAAGAAGATACAAATGAGGAGACCCTGGTTCCCCAGGA
AATGGAAAAAGAAGAGGAAACAACCCAAGTCTGCACAGGGGCCCATCAAGCAGCTGCCTC
CAGTCAGGACAACTGTGCAGAAAACCAAGTGCATGAGAGAGAGACCCATCCTCCTGCTCC
AGAGGCCGAGGCGGGGGAGGCAGAGTTGGGGGCCCTTCCAGAGGCTCAGCCAGCCTGCGG
GGAGCTCAGCGAGGGCACCCGCAGCCCAGGCCCCACAGAGGAGCAAGTAGAGGCCGGGGG
GCCCCCCAAAGGGGAGCTTACAGAGGGGGCTTCCGGACTGGATGCCCTTGGAGGAGAAGG
GGCCGTGTGTGCTGTCGAGGCTGAGGCTGTGCCCCAAGAAGGTTGCATGTTCAGTTCGGA
CCCCCTCAGCCCCAGGGAGAGCCAGATGTCTGTGGGAGAAGAATTGGTGGGAGGGGAGTG
CAGCACAGCCCTGGATGCTGCCAGCGTGGATGCAGGGGAGAGGGAGGCTGCCCATGTTCA
CCAGTGTCCGTGGGTGGTTGAGAATGATCCAAACACCACCGAGACCCTGGAGTCACAGCC
AGAGGGTCCCCCAGCACAGCCCTGGGAGGAGTGAAAGGGGCAGTTTGGCAAAAGCCTTTC
TCTGAACAAACTCAGACAAAAGAATATAGCTAAGGGTACACGTAGGGGTTGCATACACGT
GGTTACCAAAAGAAAAAGAAAAAAAAAAAAGTATAAATACTTAATTTGTAGAATGAAGCC
AGAGGCAATGCACACAGGGCGTGCGCACTGAGGCAAACCTTTGTGGAATTGAACTGTTCC
ACCATGAATTATTGCTTTAGCATTTTAATAGGAATTACAAAGGTAATGCAGTGTGTGGGC
TAGGAGGCAGCTGAGGGCGTGCAGGGAGTGAAGTGAAGGTGGACAAAACAGTAGGAGCAT
TCTGCACATTTTCTTCAAATGCACTTTAAGGCTTTTTAATTTTTTTTTGTAAGAATGCAA
ATGTATACTGTACATCCGGCTTTACCTCCCACTCTGCCAACCTCACCATCTCTTAAGGAC
TCAGCATTCATCCACAGTCAGGCTGGAGGAAGGGGAAGGAATGAACACCAGACCCCCCCT
GCTGTGGGCCACCCCACAGAGCCTGAGGCATCCTGGGGGAGGCTGCGTGAAACAAAGGAC
GGTTGAGGTGCGTGGGACTGTCTGGGCCTGTTGCTAATTCTGCTATCCATTTCTTATTAA
TTAATCTTGTTAATTCTCATTAATTAATCACTTTTTAGACAAAGTCCGATGAGCCAAGGA
AATTTCCTTGGCATGTTTAAGCCTGAAAGCATTCCAAATTAGTCTTAGATGGTGCAGAGA
AAGAGCTTAGCTAAATTATCAAGCCTAAAGCCTGCCAATTAAACAAACATTATTTGAACA
GCTATTCTACGCCACACGCTGTATTAGGCACAGTAACAAAAAAAGAAAAAAAGAAAAAAA
AAAAGAAAAGGTACTTGTCTAGCATAAATTAAAAGGCCCAAAGAATTTAATCTAAAAGAA
AAAATATGGCAATTTTCAAACCATGACAATTTCACCTCTTCCCATTGAAACAGTCCTGGT
TTATTCCCAGGAGGGAATAAAGGGCATAAATGAATAAAATGAGTAAAAAAGAAAGAAAGA
AGAAGAGAGGGAATGAAAAGGGAGAAAGAAAGAAAGAAAGTGAAAAACCAAGCTATATAC
CATAAAATTCCAAGGATGTTGCCAAAATCGGAAACCATGAGTTTAGTTGTTCAGCAGGCG
GAGCCTTGTTTTGTCACTGATGCTGGGATACTGCGGAGAAGATGGCCCTGTTCCTCTCTC
CCAGAACTTACGCTTGGTTGGAAATAGACAGAAATACATCTTCTAAACGGATCATAGCCT
TTAACTGGTAAGGCTAAAGGTGGAATTTGCTTACTTGCAAAAGATGAAAAAGATGTGTTC
TCTGGTCCTTCAGAAAAATATCAGATCGTTTTCTGAAAACTTTTGTCCCAGTACTGCATT
GTCCACAAATTCTCAATATTAGATTCCAACCTGCTGTCCTGAGAGCTTATTTTGATCATC
ATTGGCAAGTAAGTTTCTCTCCGTTTTTATAACTGAATCACTTTATTGTACAGCAGAAAT
TAGCACAGTTCAATAAAACTTTAAACAGCAGAAATTAGCACAGTTCAATAAAACTCTAAA
CAAGGAAAACAAAAAAATTTTTCAACCAGTTTAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGATTATGACAGCAGCACCATCCGGAAGAGGATATTTCAAGAGGCGCTGGTTCAAATCAC
ACTTCCCACCATGCAGAAGGCGCTGGCGTCCATGTGTAAACCAGAACTTCAGAAATACGA
GCAGTTCATTTTTGCAGATCACACCCATATGATCCACGTTGAGAATGTCTACGAGGAGAT
TTTACATCAGATCCTCCTTGATGAAACCCTGAAAGTGATAAAGGAAGCTGCTGTCCTGAA
GAAACACAACTTATTTGAAGACAACATGGCCCTGCCCAGCGAAAGCGTGTCCAGCTTAAC
TGATCTAAAAACTCCTGCAGGGTCCAACCAGGCCAGCCCTGCCAGGAGAGCCTCTGCCAT
TCTGCCAGGCGGTCCAGATAGTGAGATCGTGAGTAATGAGGTATTCCAGGAGTCAGGGGA
AAAGAAGGAGTCTGGGGTCTCCAGTTCTTTGGCCAAAGGAGAAAGCCTTCCTTCCCCTGT
GCCCAGCCCTCCCCCAGGCGGGGACGGGCAGCTCATCATTTCAAGCATGGATGACCCTGC
TGTGAATCTTGTGGCTGCAGAGGACACAGCAGGAGACCTGGGCACACACTCATCAGAGCT
GGAGTGTGAGGAGACTCCTGAGGACCAAGAACCCCCCCAGGAAAAGCCCGAGCCCACCTC
TGCCTCAGGCTCCTTGAAGGAACTCAGAGACCTGTTGACAGTGACCATTGAAGTACCAGC
GGAGTCTGGCAAGCTCAAGATTGAAGAAGATACAAATGAGGAGACCCTGGTTCCCCAGGA
AATGGAAAAAGAAGAGGAAACAACCCAAGTCTGCACAGGGGCCCATCAAGCAGCTGCCTC
CAGTCAGGACAACTGTGCAGAAAACCAAGTGCATGAGAGAGAGACCCATCCTCCTGCTCC
AGAGGCCGAGGCGGGGGAGGCAGAGTTGGGGGCCCTTCCAGAGGCTCAGCCAGCCTGCGG
GGAGCTCAGCGAGGGCACCCGCAGCCCAGGCCCCACAGAGGAGCAAGTAGAGGCCGGGGG
GCCCCCCAAAGGGGAGCTTACAGAGGGGGCTTCCGGACTGGATGCCCTTGGAGGAGAAGG
GGCCGTGTGTGCTGTCGAGGCTGAGGCTGTGCCCCAAGAAGGTTGCATGTTCAGTTCGGA
CCCCCTCAGCCCCAGGGAGAGCCAGATGTCTGTGGGAGAAGAATTGGTGGGAGGGGAGTG
CAGCACAGCCCTGGATGCTGCCAGCGTGGATGCAGGGGAGAGGGAGGCTGCCCATGTTCA
CCAGTGTCCGTGGGTGGTTGAGAATGATCCAAACACCACCGAGACCCTGGAGTCACAGCC
AGAGGGTCCCCCAGCACAGCCCTGGGAGGAGTGAAAGGGGCAGTTTGGCAAAAGCCTTTC
TCTGAACAAACTCAGACAAAAGAATATAGCTAAGGGTACACGTAGGGGTTGCATACACGT
GGTTACCAAAAGAAAAAGAAAAAAAAAAAAGTATAAATACTTAATTTGTAGAATGAAGCC
AGAGGCAATGCACACAGGGCGTGCGCACTGAGGCAAACCTTTGTGGAATTGAACTGTTCC
ACCATGAATTATTGCTTTAGCATTTTAATAGGAATTACAAAGGTAATGCAGTGTGTGGGC
TAGGAGGCAGCTGAGGGCGTGCAGGGAGTGAAGTGAAGGTGGACAAAACAGTAGGAGCAT
TCTGCACATTTTCTTCAAATGCACTTTAAGGCTTTTTAATTTTTTTTTGTAAGAATGCAA
ATGTATACTGTACATCCGGCTTTACCTCCCACTCTGCCAACCTCACCATCTCTTAAGGAC
TCAGCATTCATCCACAGTCAGGCTGGAGGAAGGGGAAGGAATGAACACCAGACCCCCCCT
GCTGTGGGCCACCCCACAGAGCCTGAGGCATCCTGGGGGAGGCTGCGTGAAACAAAGGAC
GGTTGAGGTGCGTGGGACTGTCTGGGCCTGTTGCTAATTCTGCTATCCATTTCTTATTAA
TTAATCTTGTTAATTCTCATTAATTAATCACTTTTTAGACAAAGTCCGATGAGCCAAGGA
AATTTCCTTGGCATGTTTAAGCCTGAAAGCATTCCAAATTAGTCTTAGATGGTGCAGAGA
AAGAGCTTAGCTAAATTATCAAGCCTAAAGCCTGCCAATTAAACAAACATTATTTGAACA
GCTATTCTACGCCACACGCTGTATTAGGCACAGTAACAAAAAAAGAAAAAAAGAAAAAAA
AAAAGAAAAGGTACTTGTCTAGCATAAATTAAAAGGCCCAAAGAATTTAATCTAAAAGAA
AAAATATGGCAATTTTCAAACCATGACAATTTCACCTCTTCCCATTGAAACAGTCCTGGT
TTATTCCCAGGAGGGAATAAAGGGCATAAATGAATAAAATGAGTAAAAAAGAAAGAAAGA
AGAAGAGAGGGAATGAAAAGGGAGAAAGAAAGAAAGAAAGTGAAAAACCAAGCTATATAC
CATAAAATTCCAAGGATGTTGCCAAAATCGGAAACCATGAGTTTAGTTGTTCAGCAGGCG
GAGCCTTGTTTTGTCACTGATGCTGGGATACTGCGGAGAAGATGGCCCTGTTCCTCTCTC
CCAGAACTTACGCTTGGTTGGAAATAGACAGAAATACATCTTCTAAACGGATCATAGCCT
TTAACTGGTAAGGCTAAAGGTGGAATTTGCTTACTTGCAAAAGATGAAAAAGATGTGTTC
TCTGGTCCTTCAGAAAAATATCAGATCGTTTTCTGAAAACTTTTGTCCCAGTACTGCATT
GTCCACAAATTCTCAATATTAGATTCCAACCTGCTGTCCTGAGAGCTTATTTTGATCATC
ATTGGCAAGTAAGTTTCTCTCCGTTTTTATAACTGAATCACTTTATTGTACAGCAGAAAT
TAGCACAGTTCAATAAAACTTTAAACAGCAGAAATTAGCACAGTTCAATAAAACTCTAAA
CAAGGAAAACAAAAAAATTTTTCAACCAGTTTAAAA
|
|
gi|56203715|emb|CAI21742.1| |
Protein identifier
|
gi|56203715|emb|CAI21742.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-104, gnl|bosTau2|chrX (46866177-46866280) |
|
1-104, gnl|canFam2|chr7 (20994435-20994583) |
|
1-104, gnl|danRer3|chr2 (15109447-15109586) |
|
1-104, gnl|echTel1|scaffold_308759 (101214-101362) |
|
1-104, gnl|galGal2|chr8 (7942408-7942559) |
|
1-104, gnl|hg17|chr1 (181504372-181504514) |
|
1-104, gnl|Hg17|chr1 (181504478-181504375) |
|
1-104, gnl|loxAfr1|scaffold_1170 (109144-108996) |
|
1-104, gnl|mm7|chr1 (151643087-151642945) |
|
1-104, gnl|Mm7|chr1 (151642979-151643082) |
|
1-104, gnl|monDom2|scaffold_16 (39014677-39014825) |
|
1-104, gnl|oryCun1|scaffold_81564 (8281-8134) |
|
1-104, gnl|panTro1|chr1 (164075492-164075634) |
|
1-104, gnl|rheMac2|chr1 (185873292-185873150) |
|
1-104, gnl|rn3|chr13 (66625221-66625079) |
|
1-104, gnl|tetNig1|chrUn_random (117773677-117773584) |
| |
|
214-1766, gnl|bosTau2|chrX (46872404-46873941) |
|
214-1766, gnl|Hg17|chr1 (181496890-181495304) |
|
214-1766, gnl|Mm7|chr1 (151651104-151652643) |
| |
|
1800-2848, gnl|bosTau2|chrX (46873936-46874976) |
|
1800-2848, gnl|Hg17|chr1 (181495348-181493989) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-104, gnl|bosTau2|chrX (46866177-46866280) |
|
1-104, gnl|canFam2|chr7 (20994435-20994583) |
|
1-104, gnl|danRer3|chr2 (15109447-15109586) |
|
1-104, gnl|echTel1|scaffold_308759 (101214-101362) |
|
1-104, gnl|galGal2|chr8 (7942408-7942559) |
|
1-104, gnl|hg17|chr1 (181504372-181504514) |
|
1-104, gnl|Hg17|chr1 (181504478-181504375) |
|
1-104, gnl|loxAfr1|scaffold_1170 (109144-108996) |
|
1-104, gnl|mm7|chr1 (151643087-151642945) |
|
1-104, gnl|Mm7|chr1 (151642979-151643082) |
|
1-104, gnl|monDom2|scaffold_16 (39014677-39014825) |
|
1-104, gnl|oryCun1|scaffold_81564 (8281-8134) |
|
1-104, gnl|panTro1|chr1 (164075492-164075634) |
|
1-104, gnl|rheMac2|chr1 (185873292-185873150) |
|
1-104, gnl|rn3|chr13 (66625221-66625079) |
|
1-104, gnl|tetNig1|chrUn_random (117773677-117773584) |
| |
|
214-1766, gnl|bosTau2|chrX (46872404-46873941) |
|
214-1766, gnl|Hg17|chr1 (181496890-181495304) |
|
214-1766, gnl|Mm7|chr1 (151651104-151652643) |
| |
|
1800-2848, gnl|bosTau2|chrX (46873936-46874976) |
|
1800-2848, gnl|Hg17|chr1 (181495348-181493989) |
|
aor (0.781097) |
|
gul (0.710353) |
|
ret (0.514933) |
|
pro (0.512033) |
|
bla (0.497389) |
|
cbl (0.229595) |
|
ece (0.229305) |
|
jca (0.22792) |
|
tes (0.207814) |
|
hea (0.204499) |
|
jej (0.197844) |
|
fat (0.147427) |
|
csk (0.140746) |
|
ssp (0.13552) |
|
ese (0.126502) |
|
cty (0.10408) |
|
aor (0.781097) |
|
gul (0.710353) |
|
ret (0.514933) |
|
pro (0.512033) |
|
bla (0.497389) |
|
cbl (0.229595) |
|
ece (0.229305) |
|
jca (0.22792) |
|
tes (0.207814) |
|
hea (0.204499) |
|
jej (0.197844) |
|
fat (0.147427) |
|
csk (0.140746) |
|
ssp (0.13552) |
|
ese (0.126502) |
|
cty (0.10408) |
