Non-Coding RNA Search

Ss1.1-Ova1-OVR010013H09.5

Sequence:


               
               GAGAAGCGGCTGGCGCGGCCAGAAGGCAGCAGCGCGGCGCGCGGCGGAGGTTTTGGTATG
AACAGGATTCGGATCCACGTCTTGCCGACCAATCGGGGAAGGATCACCCCAGTGCCCAGG
TCTCAGGAGCCCTTGTCTTGTTCGTTTACTCATCGCCCATGCTCGCAGCCTCGTCTGGAG
GGGCAGGAGTTTTGCATTAAGCATATCCTTGAAGACAAGAATGCACCTTTCAAGCAGTGC
AGTTATATATCCACAAAGAATGGAAAAAGATGTCCTTGTGCTGCTCCGAAGCCTGAGAAG
AAAGACGGGGTGTCCTTCTGTGCTGAACATGCCCGTAGGAATGCTCTAGCACTTCATGCT
CAAATGAAGAAGACGAATCCAGGGCCTGTGGGTGAAACACTCTTGTGCCAGCTGAGCTCA
TATGCTAAGACAGAGCTGGGGTCTCAGACTCCAGAAAGTAGCCGAAGTGAAGCCAGCCGA
ATTTTGGATGAAGACAGCTGGAGTGATGGGGAGCAGGAACCCATTACTGTGGATCAGACA
TGGAGAGGTGACCCTGACAGTGAAGCTGATAGCATAGACAGTGATCAAGAAGATCCCCTA
AAACATGCTGGTGTCTACACAGCAGAAGAAGTGGCCCTAATTATGCGTGAGAAGTTAATT
CGTTTGCAGTCTTTGTACATTGACCAGTTTAAACGACTTCAGCATCTGCTCAAAGAGAAG
AAGCGACGTTACTTACACAATCGCAAAGTGGAACATGAAGCTCTAGGTAGTAGTCTTCTG
ACTGGCCCAGAGGGACTTCTGGCCAAAGAAAGAGAGAATTTAAAGCGTCTAAAATGTCTT
CGGCGATATCGTCAGCGCTATGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAGCGGCTGGCGCGGCCAGAAGGCAGCAGCGCGGCGCGCGGCGGAGGTTTTGGTATG
AACAGGATTCGGATCCACGTCTTGCCGACCAATCGGGGAAGGATCACCCCAGTGCCCAGG
TCTCAGGAGCCCTTGTCTTGTTCGTTTACTCATCGCCCATGCTCGCAGCCTCGTCTGGAG
GGGCAGGAGTTTTGCATTAAGCATATCCTTGAAGACAAGAATGCACCTTTCAAGCAGTGC
AGTTATATATCCACAAAGAATGGAAAAAGATGTCCTTGTGCTGCTCCGAAGCCTGAGAAG
AAAGACGGGGTGTCCTTCTGTGCTGAACATGCCCGTAGGAATGCTCTAGCACTTCATGCT
CAAATGAAGAAGACGAATCCAGGGCCTGTGGGTGAAACACTCTTGTGCCAGCTGAGCTCA
TATGCTAAGACAGAGCTGGGGTCTCAGACTCCAGAAAGTAGCCGAAGTGAAGCCAGCCGA
ATTTTGGATGAAGACAGCTGGAGTGATGGGGAGCAGGAACCCATTACTGTGGATCAGACA
TGGAGAGGTGACCCTGACAGTGAAGCTGATAGCATAGACAGTGATCAAGAAGATCCCCTA
AAACATGCTGGTGTCTACACAGCAGAAGAAGTGGCCCTAATTATGCGTGAGAAGTTAATT
CGTTTGCAGTCTTTGTACATTGACCAGTTTAAACGACTTCAGCATCTGCTCAAAGAGAAG
AAGCGACGTTACTTACACAATCGCAAAGTGGAACATGAAGCTCTAGGTAGTAGTCTTCTG
ACTGGCCCAGAGGGACTTCTGGCCAAAGAAAGAGAGAATTTAAAGCGTCTAAAATGTCTT
CGGCGATATCGTCAGCGCTATGGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|31981558|ref|NP_598475.2|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|31981558|ref|NP_598475.2|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               34-490, gnl|bosTau2|chr1 (87618952-87618515)
               

               
               34-490, gnl|Hg17|chr12 (47361693-47352010)
               

               
               34-490, gnl|Mm7|chr7 (68522448-68522889)
               


               
               681-864, gnl|bosTau2|chr1 (87617446-87617270)
               

               
               681-864, gnl|Hg17|chr12 (47351934-47349225)
               

               
               681-864, gnl|Mm7|chr7 (68523080-68523263)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-490, gnl|bosTau2|chr1 (87618952-87618515)
               

               
               34-490, gnl|Hg17|chr12 (47361693-47352010)
               

               
               34-490, gnl|Mm7|chr7 (68522448-68522889)
               


               
               681-864, gnl|bosTau2|chr1 (87617446-87617270)
               

               
               681-864, gnl|Hg17|chr12 (47351934-47349225)
               

               
               681-864, gnl|Mm7|chr7 (68523080-68523263)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jca (0.11396)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	34-490, gnl\|bosTau2\|chr1 (87618952-87618515)
	34-490, gnl\|Hg17\|chr12 (47361693-47352010)
	34-490, gnl\|Mm7\|chr7 (68522448-68522889)

	681-864, gnl\|bosTau2\|chr1 (87617446-87617270)
	681-864, gnl\|Hg17\|chr12 (47351934-47349225)
	681-864, gnl\|Mm7\|chr7 (68523080-68523263)