Ss1.1-Ova1-OVR010017A10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGGGATCTGGGCCCAGAATCCGGCGGCTCCTGGGTGCATGAGGCGAGTGAGACTCATG AAGGTGTTTGTCACGCGCAGGATCCCCCCGGAGGGCAGCGCTACGCTCGCCCGCGCCGCA GACTGTGAGGTGGAGCAGTGGGATTCCGATGAGCCCATCCCCAGTGAGGACCTGGAACGG GGCGTGGCCGGGGCGCATGGCCTGCTCTGCCTCCTCTCTGACCGCATAGACAAGAAGCTC CTGGACACTGCAGGAGCCAATCTCAAAGTCATCAGCACAATGTCTGTGGGTGTCGACCAC TTGGCTTTGGATGAAATCAAGAAGCGTGGGATCCGTGTGGGCTACACCCCGGACGTCCTG ACAGACACCACGGCCGAACTTGCCGTCTCCCTGCTGCTCACCACCTGTCGCCGATTGCCC GAGGCCATCGAGGAGGTGAAGAACGGTGGCTGGACATCGTGGAAGCCCCTGTGGATGTGC GGCTACGGCCTCACGGAGAGCACCGTCGGCATCGTTGGCCTGGGGCGCATAGGCCAGGCC ATTGCTCGGCGTCTGAAACCATTCGGTGTCCGGAGATTTCTATACACAGGGAGCCAGCCC AGGCCTCAGGAAGCAGCGGAATTCCAGGCAGAGTTTGTGCCCGTCCTCCAGCTGGCCGCC GAGTCTGATTTCATCATTGTGGCCTGCTCCTTAACACCTGCAACCAGAGGGCTCTGCAGC AAGGACTTCTACCAGCGGATGAAGAAAACGGCTGTGTTTATCAACATCAGCAGGGGAGAA GTGGTAAACCAGGACGACCTGTACCAGGCCCTGACCAGCGGGCAGATTGCAGCTGCTGGA CTGGATGTGACGACCCCGGAACCACTGCCTACAAACCACCCTCTCCTGACCCTGAAGAAC TGTGTGATCCTGCCCCACATCGGCAGTGCCACCTACAGGACCCGCAACACCATGTCCGTG TTGGCAGCTAACAACTTGCTGGCTGGCCTGAGAGGGGAGCCGATGCCCAGTGAACTCAAG CTGTAGTCACTGAAGGCCAGCAGGCAAACGGCCCCGGGATTCTATCAGATGCACCCGGGC TCGACTGGACCCACAGGATGGGCACAAAAGCAAGAAGTCTAATCTCTACTGATTCTGCAG AGGGAAGACTGGTGCCGACAGATGTGCTTGCCACTGCTGTGCTGGAAACATCTGAGCCCA AAGTGTGTAATTCTATTAAATAATTCTCTGAGAGACCAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGGGATCTGGGCCCAGAATCCGGCGGCTCCTGGGTGCATGAGGCGAGTGAGACTCATG AAGGTGTTTGTCACGCGCAGGATCCCCCCGGAGGGCAGCGCTACGCTCGCCCGCGCCGCA GACTGTGAGGTGGAGCAGTGGGATTCCGATGAGCCCATCCCCAGTGAGGACCTGGAACGG GGCGTGGCCGGGGCGCATGGCCTGCTCTGCCTCCTCTCTGACCGCATAGACAAGAAGCTC CTGGACACTGCAGGAGCCAATCTCAAAGTCATCAGCACAATGTCTGTGGGTGTCGACCAC TTGGCTTTGGATGAAATCAAGAAGCGTGGGATCCGTGTGGGCTACACCCCGGACGTCCTG ACAGACACCACGGCCGAACTTGCCGTCTCCCTGCTGCTCACCACCTGTCGCCGATTGCCC GAGGCCATCGAGGAGGTGAAGAACGGTGGCTGGACATCGTGGAAGCCCCTGTGGATGTGC GGCTACGGCCTCACGGAGAGCACCGTCGGCATCGTTGGCCTGGGGCGCATAGGCCAGGCC ATTGCTCGGCGTCTGAAACCATTCGGTGTCCGGAGATTTCTATACACAGGGAGCCAGCCC AGGCCTCAGGAAGCAGCGGAATTCCAGGCAGAGTTTGTGCCCGTCCTCCAGCTGGCCGCC GAGTCTGATTTCATCATTGTGGCCTGCTCCTTAACACCTGCAACCAGAGGGCTCTGCAGC AAGGACTTCTACCAGCGGATGAAGAAAACGGCTGTGTTTATCAACATCAGCAGGGGAGAA GTGGTAAACCAGGACGACCTGTACCAGGCCCTGACCAGCGGGCAGATTGCAGCTGCTGGA CTGGATGTGACGACCCCGGAACCACTGCCTACAAACCACCCTCTCCTGACCCTGAAGAAC TGTGTGATCCTGCCCCACATCGGCAGTGCCACCTACAGGACCCGCAACACCATGTCCGTG TTGGCAGCTAACAACTTGCTGGCTGGCCTGAGAGGGGAGCCGATGCCCAGTGAACTCAAG CTGTAGTCACTGAAGGCCAGCAGGCAAACGGCCCCGGGATTCTATCAGATGCACCCGGGC TCGACTGGACCCACAGGATGGGCACAAAAGCAAGAAGTCTAATCTCTACTGATTCTGCAG AGGGAAGACTGGTGCCGACAGATGTGCTTGCCACTGCTGTGCTGGAAACATCTGAGCCCA AAGTGTGTAATTCTATTAAATAATTCTCTGAGAGACCAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 123-254, gnl|bosTau2|chr8 (30074131-30074000) | |
| 123-254, gnl|canFam2|chr11 (56778806-56778949) | |
| 123-254, gnl|danRer3|chr1 (15775506-15775379) | |
| 123-254, gnl|dasNov1|scaffold_1773 (87058-86915) | |
| 123-254, gnl|echTel1|scaffold_312098 (184861-184978) | |
| 123-254, gnl|fr1|chrUn (52015953-52016087) | |
| 123-254, gnl|galGal2|chrUn (1603171-1603033) | |
| 123-254, gnl|hg17|chr9 (37414841-37414982) | |
| 123-254, gnl|Hg17|chr9 (37414842-37414972) | |
| 123-254, gnl|mm7|chr4 (44996692-44996833) | |
| 123-254, gnl|Mm7|chr4 (44996693-44996824) | |
| 123-254, gnl|oryCun1|scaffold_175414 (42268-42408) | |
| 123-254, gnl|panTro1|chr11 (38031049-38031190) | |
| 123-254, gnl|rn3|chr5 (61538342-61538483) | |
| 123-254, gnl|tetNig1|chr18 (129954-130089) | |
| 123-254, gnl|xenTro1|scaffold_495 (149692-149551) | |
| 326-443, gnl|bosTau2|chr8 (30073015-30072898) | |
| 326-443, gnl|canFam2|chr11 (56780669-56780819) | |
| 326-443, gnl|danRer3|chr1 (15773672-15773526) | |
| 326-443, gnl|dasNov1|scaffold_1773 (85305-85153) | |
| 326-443, gnl|echTel1|scaffold_312098 (186887-187054) | |
| 326-443, gnl|fr1|chrUn (52016460-52016603) | |
| 326-443, gnl|galGal2|chrUn (1602562-1602423) | |
| 326-443, gnl|hg17|chr9 (37416514-37416689) | |
| 326-443, gnl|Hg17|chr9 (37416534-37416651) | |
| 326-443, gnl|loxAfr1|scaffold_101372 (7586-7420) | |
| 326-443, gnl|mm7|chr4 (44998223-44998365) | |
| 326-443, gnl|Mm7|chr4 (44998243-44998360) | |
| 326-443, gnl|oryCun1|scaffold_175414 (44076-44231) | |
| 326-443, gnl|panTro1|chr11 (38032722-38032897) | |
| 326-443, gnl|rn3|chr5 (61539906-61540058) | |
| 326-443, gnl|tetNig1|chr18 (130326-130447) | |
| 326-443, gnl|xenTro1|scaffold_495 (148828-148660) | |
| 531-637, gnl|bosTau2|chr8 (30070696-30070590) | |
| 531-637, gnl|canFam2|chr11 (56783793-56783915) | |
| 531-637, gnl|danRer3|chr1 (15771531-15771419) | |
| 531-637, gnl|fr1|chrUn (17085601-17085719) | |
| 531-637, gnl|hg17|chr9 (37419718-37419839) | |
| 531-637, gnl|Hg17|chr9 (37419727-37419833) | |
| 531-637, gnl|loxAfr1|scaffold_101372 (4968-4845) | |
| 531-637, gnl|mm7|chr4 (45000088-45000210) | |
| 531-637, gnl|Mm7|chr4 (45000098-45000204) | |
| 531-637, gnl|oryCun1|scaffold_175414 (46390-46511) | |
| 531-637, gnl|panTro1|chr11 (38035932-38036053) | |
| 531-637, gnl|rheMac2|chr15 (40004392-40004290) | |
| 531-637, gnl|rn3|chr5 (61541719-61541841) | |
| 531-637, gnl|tetNig1|chr18 (130703-130824) | |
| 531-637, gnl|xenTro1|scaffold_495 (146811-146693) | |
| 772-904, gnl|bosTau2|chr8 (30069146-30069014) | |
| 772-904, gnl|Hg17|chr9 (37422003-37422135) | |
| 772-904, gnl|Mm7|chr4 (45002732-45002864) | |
| 1115-1233, gnl|bosTau2|chr8 (30067338-30067221) | |
| 1115-1233, gnl|Hg17|chr9 (37426841-37426987) | |
| 1115-1233, gnl|Mm7|chr4 (45004393-45004510) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 123-254, gnl|bosTau2|chr8 (30074131-30074000) | |
| 123-254, gnl|canFam2|chr11 (56778806-56778949) | |
| 123-254, gnl|danRer3|chr1 (15775506-15775379) | |
| 123-254, gnl|dasNov1|scaffold_1773 (87058-86915) | |
| 123-254, gnl|echTel1|scaffold_312098 (184861-184978) | |
| 123-254, gnl|fr1|chrUn (52015953-52016087) | |
| 123-254, gnl|galGal2|chrUn (1603171-1603033) | |
| 123-254, gnl|hg17|chr9 (37414841-37414982) | |
| 123-254, gnl|Hg17|chr9 (37414842-37414972) | |
| 123-254, gnl|mm7|chr4 (44996692-44996833) | |
| 123-254, gnl|Mm7|chr4 (44996693-44996824) | |
| 123-254, gnl|oryCun1|scaffold_175414 (42268-42408) | |
| 123-254, gnl|panTro1|chr11 (38031049-38031190) | |
| 123-254, gnl|rn3|chr5 (61538342-61538483) | |
| 123-254, gnl|tetNig1|chr18 (129954-130089) | |
| 123-254, gnl|xenTro1|scaffold_495 (149692-149551) | |
| 326-443, gnl|bosTau2|chr8 (30073015-30072898) | |
| 326-443, gnl|canFam2|chr11 (56780669-56780819) | |
| 326-443, gnl|danRer3|chr1 (15773672-15773526) | |
| 326-443, gnl|dasNov1|scaffold_1773 (85305-85153) | |
| 326-443, gnl|echTel1|scaffold_312098 (186887-187054) | |
| 326-443, gnl|fr1|chrUn (52016460-52016603) | |
| 326-443, gnl|galGal2|chrUn (1602562-1602423) | |
| 326-443, gnl|hg17|chr9 (37416514-37416689) | |
| 326-443, gnl|Hg17|chr9 (37416534-37416651) | |
| 326-443, gnl|loxAfr1|scaffold_101372 (7586-7420) | |
| 326-443, gnl|mm7|chr4 (44998223-44998365) | |
| 326-443, gnl|Mm7|chr4 (44998243-44998360) | |
| 326-443, gnl|oryCun1|scaffold_175414 (44076-44231) | |
| 326-443, gnl|panTro1|chr11 (38032722-38032897) | |
| 326-443, gnl|rn3|chr5 (61539906-61540058) | |
| 326-443, gnl|tetNig1|chr18 (130326-130447) | |
| 326-443, gnl|xenTro1|scaffold_495 (148828-148660) | |
| 531-637, gnl|bosTau2|chr8 (30070696-30070590) | |
| 531-637, gnl|canFam2|chr11 (56783793-56783915) | |
| 531-637, gnl|danRer3|chr1 (15771531-15771419) | |
| 531-637, gnl|fr1|chrUn (17085601-17085719) | |
| 531-637, gnl|hg17|chr9 (37419718-37419839) | |
| 531-637, gnl|Hg17|chr9 (37419727-37419833) | |
| 531-637, gnl|loxAfr1|scaffold_101372 (4968-4845) | |
| 531-637, gnl|mm7|chr4 (45000088-45000210) | |
| 531-637, gnl|Mm7|chr4 (45000098-45000204) | |
| 531-637, gnl|oryCun1|scaffold_175414 (46390-46511) | |
| 531-637, gnl|panTro1|chr11 (38035932-38036053) | |
| 531-637, gnl|rheMac2|chr15 (40004392-40004290) | |
| 531-637, gnl|rn3|chr5 (61541719-61541841) | |
| 531-637, gnl|tetNig1|chr18 (130703-130824) | |
| 531-637, gnl|xenTro1|scaffold_495 (146811-146693) | |
| 772-904, gnl|bosTau2|chr8 (30069146-30069014) | |
| 772-904, gnl|Hg17|chr9 (37422003-37422135) | |
| 772-904, gnl|Mm7|chr4 (45002732-45002864) | |
| 1115-1233, gnl|bosTau2|chr8 (30067338-30067221) | |
| 1115-1233, gnl|Hg17|chr9 (37426841-37426987) | |
| 1115-1233, gnl|Mm7|chr4 (45004393-45004510) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| cov (0.660764) | |
| cli (0.611247) | |
| cly (0.361925) | |
| nje (0.33184) | |
| eje (0.296501) | |
| hyp (0.285673) | |
| ebs (0.236602) | |
| fli (0.202881) | |
| jej (0.197844) | |
| col (0.195008) | |
| ill (0.175593) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| csp (0.161186) | |
| spl (0.143184) | |
| eep (0.122564) | |
| clu (0.119646) | |
| nbm (0.0993246) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.660764) | |
| cli (0.611247) | |
| cly (0.361925) | |
| nje (0.33184) | |
| eje (0.296501) | |
| hyp (0.285673) | |
| ebs (0.236602) | |
| fli (0.202881) | |
| jej (0.197844) | |
| col (0.195008) | |
| ill (0.175593) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| csp (0.161186) | |
| spl (0.143184) | |
| eep (0.122564) | |
| clu (0.119646) | |
| nbm (0.0993246) |