Ss1.1-Ova1-OVR010017A11.5
|
CTACGTCATCGCTCCGAGCCAGCGATCCGCTGCCCGCGCGGGCGCCGCCCGAGACCGTGG
GGCTCCGGTTGCCGCCCCCTCAGGAGCCACCATGTTGGTGATACCCCCCGGACTGAGCGA
GGAGGAGGAGGCTCTGCAGAAGAAATTCAACAAACTCAAGAAAAAGAAAAAGGCATTGCT
GGCTCTGAAGAAGCAAAGCAGCAGCAACACTGCCAGCCAAGGTGGTGTCAAACGCTCTCT
GTCAGAGCAGCCCGTGGTGGACACGGCCACAGCAACTGAGCAAGCAAAGCAGCTGGTGAA
GTCAGGAGCCATCAGTGCCATCAAGGCCGAGACCAAGAACTCGGGCTTCAAACGTTCTCG
AACTCTAGAGGGGAAGTTAAAGGACCCTGAGAAGGGGCCAGTCCCCACTTTCCAGCCGTT
CCAGCGGAGTATATCTGCCGACGACGATCTACAGGAGTCATCCAGACGTCCCCAGAGGAA
ATCTCTGTATGAGAGCTTCGTGTCATCCAGTGACCGGCTTCGGGAACTGGGGCCAGACGG
GGAAGAGGCAGAGGGCCCAGGGGCTGGCGATGGCCCCCCTCGAAGCTTTGACTGGGGCTA
CGAAGAACGCGGCAGCGCCCGCTCCTCAACCTCCCCTCCCCGAAGCCGCAGCCGGGACCG
CAGTCGTGAGCGGAACCGGGACAGAGACCGGGAACGGGATCGAGACAGAGATCGAGACCG
GGACCGGGATCGGGACAGAGACCGAGATCGAGACCGGGACAGGGATCGAGACAGGGACCG
GGATCGAGACCGGGACAGGGACCGGGACCGAGAGGGCCCTTTCCGCAGGTCGGACTCGTT
CCCTGAGCGCCGGGCCCCTCGGAAGGGGAACACTCTCTACGTCTATGGAGAAGACATGAC
ACCCACGCTTCTCCGTGGGGCCTTCTCTCCCTTTGGAAACATCATTGACCTCTCCATGGA
CCCACCCAGAAACTGTGCCTTCGTCACCTATGAAAAGATGGAGTCAGCAGATCAGGCCGT
TGCTGAGCTCAACGGGACCCAGGTGGAATCCGTGCAGCTCAAGGTCAGCATTGCCCGAAA
GCAGCCCATGCTGGATGCCGCCACTGGCAAGTCTGTCTGGGGCTCCCTGGCTGTCCAGAA
TAGCCCTAAGGGTTGCCACCGGGACAAGAGGACTCAGATTGTCTACAGTGATGACGTCTA
CAAGGAAAACCTTGTGGACGGCTTCTAGGGAATGGAGCTGGATTCCGTGTGCCTCACCTG
CCCCAACGCTGGTCTCAGTAAAACACTGAGGTGGAAGCTCACACATCTCCCTCAGCCTCT
GGTTTTTCAGCCCTTGGGATTGGGGTCGAGCCTTTAAAAACGGCTGTTAGATTTGATCTC
AGTTGTAACAACATGGCCAGTGCACGCTCCCCGTTCCTTTACCCCAAAAGGATCTTGAAC |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTACGTCATCGCTCCGAGCCAGCGATCCGCTGCCCGCGCGGGCGCCGCCCGAGACCGTGG
GGCTCCGGTTGCCGCCCCCTCAGGAGCCACCATGTTGGTGATACCCCCCGGACTGAGCGA
GGAGGAGGAGGCTCTGCAGAAGAAATTCAACAAACTCAAGAAAAAGAAAAAGGCATTGCT
GGCTCTGAAGAAGCAAAGCAGCAGCAACACTGCCAGCCAAGGTGGTGTCAAACGCTCTCT
GTCAGAGCAGCCCGTGGTGGACACGGCCACAGCAACTGAGCAAGCAAAGCAGCTGGTGAA
GTCAGGAGCCATCAGTGCCATCAAGGCCGAGACCAAGAACTCGGGCTTCAAACGTTCTCG
AACTCTAGAGGGGAAGTTAAAGGACCCTGAGAAGGGGCCAGTCCCCACTTTCCAGCCGTT
CCAGCGGAGTATATCTGCCGACGACGATCTACAGGAGTCATCCAGACGTCCCCAGAGGAA
ATCTCTGTATGAGAGCTTCGTGTCATCCAGTGACCGGCTTCGGGAACTGGGGCCAGACGG
GGAAGAGGCAGAGGGCCCAGGGGCTGGCGATGGCCCCCCTCGAAGCTTTGACTGGGGCTA
CGAAGAACGCGGCAGCGCCCGCTCCTCAACCTCCCCTCCCCGAAGCCGCAGCCGGGACCG
CAGTCGTGAGCGGAACCGGGACAGAGACCGGGAACGGGATCGAGACAGAGATCGAGACCG
GGACCGGGATCGGGACAGAGACCGAGATCGAGACCGGGACAGGGATCGAGACAGGGACCG
GGATCGAGACCGGGACAGGGACCGGGACCGAGAGGGCCCTTTCCGCAGGTCGGACTCGTT
CCCTGAGCGCCGGGCCCCTCGGAAGGGGAACACTCTCTACGTCTATGGAGAAGACATGAC
ACCCACGCTTCTCCGTGGGGCCTTCTCTCCCTTTGGAAACATCATTGACCTCTCCATGGA
CCCACCCAGAAACTGTGCCTTCGTCACCTATGAAAAGATGGAGTCAGCAGATCAGGCCGT
TGCTGAGCTCAACGGGACCCAGGTGGAATCCGTGCAGCTCAAGGTCAGCATTGCCCGAAA
GCAGCCCATGCTGGATGCCGCCACTGGCAAGTCTGTCTGGGGCTCCCTGGCTGTCCAGAA
TAGCCCTAAGGGTTGCCACCGGGACAAGAGGACTCAGATTGTCTACAGTGATGACGTCTA
CAAGGAAAACCTTGTGGACGGCTTCTAGGGAATGGAGCTGGATTCCGTGTGCCTCACCTG
CCCCAACGCTGGTCTCAGTAAAACACTGAGGTGGAAGCTCACACATCTCCCTCAGCCTCT
GGTTTTTCAGCCCTTGGGATTGGGGTCGAGCCTTTAAAAACGGCTGTTAGATTTGATCTC
AGTTGTAACAACATGGCCAGTGCACGCTCCCCGTTCCTTTACCCCAAAAGGATCTTGAAC |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
239-383, gnl|bosTau2|chr23 (23548725-23548581) |
|
239-383, gnl|canFam2|chr12 (4412826-4412989) |
|
239-383, gnl|danRer3|chrNA (187911713-187911876) |
|
239-383, gnl|dasNov1|scaffold_95585 (7415-7253) |
|
239-383, gnl|fr1|chrUn (203980168-203980014) |
|
239-383, gnl|hg17|chr6 (32032444-32032607) |
|
239-383, gnl|Hg17|chr6 (32032592-32032448) |
|
239-383, gnl|mm7|chr17 (32948792-32948629) |
|
239-383, gnl|Mm7|chr17 (32948642-32948786) |
|
239-383, gnl|monDom2|scaffold_42 (17378290-17378123) |
|
239-383, gnl|panTro1|chr5 (32435254-32435417) |
|
239-383, gnl|rheMac2|chr4 (31612384-31612547) |
|
239-383, gnl|rn3|chr20 (4081468-4081631) |
|
239-383, gnl|tetNig1|chrUn_random (153074477-153074323) |
|
239-383, gnl|xenTro1|scaffold_1207 (175017-175176) |
| |
|
494-828, gnl|bosTau2|chr23 (23547682-23547360) |
|
494-828, gnl|Hg17|chr6 (32030650-32030310) |
|
494-828, gnl|Mm7|chr17 (32949930-32950258) |
| |
|
1123-1440, gnl|bosTau2|chr23 (23545234-23544917) |
|
1123-1440, gnl|Hg17|chr6 (32028162-32027846) |
|
1123-1440, gnl|Mm7|chr17 (32952204-32952493) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
239-383, gnl|bosTau2|chr23 (23548725-23548581) |
|
239-383, gnl|canFam2|chr12 (4412826-4412989) |
|
239-383, gnl|danRer3|chrNA (187911713-187911876) |
|
239-383, gnl|dasNov1|scaffold_95585 (7415-7253) |
|
239-383, gnl|fr1|chrUn (203980168-203980014) |
|
239-383, gnl|hg17|chr6 (32032444-32032607) |
|
239-383, gnl|Hg17|chr6 (32032592-32032448) |
|
239-383, gnl|mm7|chr17 (32948792-32948629) |
|
239-383, gnl|Mm7|chr17 (32948642-32948786) |
|
239-383, gnl|monDom2|scaffold_42 (17378290-17378123) |
|
239-383, gnl|panTro1|chr5 (32435254-32435417) |
|
239-383, gnl|rheMac2|chr4 (31612384-31612547) |
|
239-383, gnl|rn3|chr20 (4081468-4081631) |
|
239-383, gnl|tetNig1|chrUn_random (153074477-153074323) |
|
239-383, gnl|xenTro1|scaffold_1207 (175017-175176) |
| |
|
494-828, gnl|bosTau2|chr23 (23547682-23547360) |
|
494-828, gnl|Hg17|chr6 (32030650-32030310) |
|
494-828, gnl|Mm7|chr17 (32949930-32950258) |
| |
|
1123-1440, gnl|bosTau2|chr23 (23545234-23544917) |
|
1123-1440, gnl|Hg17|chr6 (32028162-32027846) |
|
1123-1440, gnl|Mm7|chr17 (32952204-32952493) |
|
nep (0.36785) |
|
ece (0.229305) |
|
nms (0.213858) |
|
nbm (0.198649) |
|
fhi (0.169578) |
|
cje (0.165235) |
|
nco (0.161734) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
jej (0.0989218) |
|
nep (0.36785) |
|
ece (0.229305) |
|
nms (0.213858) |
|
nbm (0.198649) |
|
fhi (0.169578) |
|
cje (0.165235) |
|
nco (0.161734) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
jej (0.0989218) |
