Non-Coding RNA Search

Ss1.1-Ova1-OVR010017B08.5

Sequence:


               
               AAAAACCAGAACCGAGTCGGGACTGCTCAGGTGGAGCCCGCAGTCCTGCCAGCGCCAACC
AGCAGGCGCACCAACACCGCTCCGGAGACTGCACCGCACCGATCCGCGCGGGACAGAGCG
GAGCCGCAGCCCCACGCGTCGCCCAGGACCCGCTCGCCAGCACTACCTCCGCCGGACTAC
CGCCGCAGCACCCATGGGGACCAGGAGACTTTAAAGGAGTTTGGGGTTTCGGGAGCAGGG
AAATCACGGATCCCCTCTCCTGGCCCTCACCTCGCCGCGTCATTGATGGGCAACCAACTG
GACCGCATCACCCACCTCAACTACAGCGAATTGCCCACAGGGGATCCGTCGGGGATCGAG
AAGGACGAGCTGCGGGTCGGGGTCGCCTACTTCTTCTCGGATGAGGAAGAGGACCTGGAC
GAACGCGGCCAGCCCGACAAGTTTGGCGTGAAGGGCCCCCCGGGCTGCGCTCCGTGCCCA
GAGAGCCCCAGCCGCCACCACCACCACCTGCTGCACCAGCTGGTCCTCAACGAAACTCAG
TTCTCCGCCTTTCGGGGCCAGGAATGCATCTTTTCCAAAGTGAGCGGCGGCCCTCAGGGC
GCCGACCTGAGCGTCTACGCGGTCACGGCGCTGCCCGCACTCTGCGAGCCCGGCGACCTG
CTGGAGCTGCTGTGGCTGCAACCCGCGCCGGAGCCGCCCGCGCCCGCCCCACACTGGGCC
GTCTACGTGGGCGGCGGGCAGATCATCCACCTGCATCAAGGCGAGATCCGCCAGGACAGC
CTGTACGAGGCGGGCGCGGCCAACGTGGGCCGGGTGGTGAATAGCTGGTACCGCTACCGC
CCGCTGGTGGCCGAGCTAGTGGTGCAGAACGCCTGCGGTCACCTGGGCCTCAAGAGCGAG
GAGATCTGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAACCAGAACCGAGTCGGGACTGCTCAGGTGGAGCCCGCAGTCCTGCCAGCGCCAACC
AGCAGGCGCACCAACACCGCTCCGGAGACTGCACCGCACCGATCCGCGCGGGACAGAGCG
GAGCCGCAGCCCCACGCGTCGCCCAGGACCCGCTCGCCAGCACTACCTCCGCCGGACTAC
CGCCGCAGCACCCATGGGGACCAGGAGACTTTAAAGGAGTTTGGGGTTTCGGGAGCAGGG
AAATCACGGATCCCCTCTCCTGGCCCTCACCTCGCCGCGTCATTGATGGGCAACCAACTG
GACCGCATCACCCACCTCAACTACAGCGAATTGCCCACAGGGGATCCGTCGGGGATCGAG
AAGGACGAGCTGCGGGTCGGGGTCGCCTACTTCTTCTCGGATGAGGAAGAGGACCTGGAC
GAACGCGGCCAGCCCGACAAGTTTGGCGTGAAGGGCCCCCCGGGCTGCGCTCCGTGCCCA
GAGAGCCCCAGCCGCCACCACCACCACCTGCTGCACCAGCTGGTCCTCAACGAAACTCAG
TTCTCCGCCTTTCGGGGCCAGGAATGCATCTTTTCCAAAGTGAGCGGCGGCCCTCAGGGC
GCCGACCTGAGCGTCTACGCGGTCACGGCGCTGCCCGCACTCTGCGAGCCCGGCGACCTG
CTGGAGCTGCTGTGGCTGCAACCCGCGCCGGAGCCGCCCGCGCCCGCCCCACACTGGGCC
GTCTACGTGGGCGGCGGGCAGATCATCCACCTGCATCAAGGCGAGATCCGCCAGGACAGC
CTGTACGAGGCGGGCGCGGCCAACGTGGGCCGGGTGGTGAATAGCTGGTACCGCTACCGC
CCGCTGGTGGCCGAGCTAGTGGTGCAGAACGCCTGCGGTCACCTGGGCCTCAAGAGCGAG
GAGATCTGCTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|31543345|ref|NP_083283.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31543345|ref|NP_083283.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               488-592, - strand, RNAz p=0.861
               

               
               753-872, - strand, RNAz p=0.945864

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               488-592, - strand, RNAz p=0.861
               

               
               753-872, - strand, RNAz p=0.945864

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               249-912, gnl|bosTau2|chr11 (62095281-62094603)
               

               
               249-912, gnl|Hg17|chr2 (14724665-14725328)
               

               
               249-912, gnl|Mm7|chr12 (14209712-14209049)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               249-912, gnl|bosTau2|chr11 (62095281-62094603)
               

               
               249-912, gnl|Hg17|chr2 (14724665-14725328)
               

               
               249-912, gnl|Mm7|chr12 (14209712-14209049)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.20816)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)

	488-592, - strand, RNAz p=0.861
	753-872, - strand, RNAz p=0.945864

	249-912, gnl\|bosTau2\|chr11 (62095281-62094603)
	249-912, gnl\|Hg17\|chr2 (14724665-14725328)
	249-912, gnl\|Mm7\|chr12 (14209712-14209049)