Ss1.1-Ova1-OVR010017B09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACCTGGAAGGCTGGTGGAAGATCAGGTACCAGGGCAAAGAGGGCTGGGCCCCGGCCTC CTACCTGAGGAAGAGCAGCGGGGAGCCCTCACCCCCGAAGCCAGGCCCCGGCTCACCCGC CCACGCAGGCGTCCCCGAGCTGGACGGCATCACCCGGCAGACGGGCCGGGAGAAGGAGCT GCTCAACAACCACCTTCTGGGTAAGCTGCATGGGACACCGCTTCCTGCGCGGTCTCCTAC CTCTGCTGCTCCCGCTGCCGCCGGTGCCAACCCTTTGGGGTCCGCATCGCACGCTCAGCC TGGAGTTCGTCTTGCCCTCCAAAAGGCCCCGCAGCCACCTCATGGCTCCGCCCCGAATCG GGACACACAATGGCACCTTCCACTGCGACGAGGCGCTGGCCTGCGCGTTGCTGCGCCTCC TGCCCGAGTACCGGGATGCAGAGATTGTGCGGACCCGGGACCCCGAGAAACTGGCTTCTT GTGACATCGTGGTAGACGTGGGTGGAGAGTACGACCCTCAGAGACACCGATATGACCATC ACCAGAGGTCTTTCACAGAGACCATGAGCTCCCTGTCCCCTGGGAAGCCGTGGCAGACCA AGCTGAGCAGTGCGGGACTCATCTATCTGCACTTCGGGCACAAGCTGCTGGCCCAGTTGC TGGGCACTAGCGAAGAGGACAGCGTGGTGGGCATCCTCTATGACAAGATGTATGAGAACT TCGTGGAGGAGGTGGATGCGGTGGACAATGGGATCGCCCAGTGGGAGGAGGGAGAGCCTC GGTACGCGCTGACCACGACCCTGAGTGCCCGGGTTGCTCGGCTCAATCCCACCTGGAACC AGCCCAACCAAGACACTGAGGCCGGGTTCAAGCGTGCAATGGATCTGGTTCGAGAGGAGT TTCTACAGAGACTAGACTTCTACCAGCACAGCTGGCTGCCAGCCCGGGCCCTGGTGGAAG AGGCCCTGGCCCAGCGGTTCCAGGTGGATGCAAGTGGGAAGATAATAGAACTGGCAAAGG GTGGATGCCCCTGGAAGGAGCACCTCTACCACCTGGAATTGGATCTGTCCCCCCCGGTGG CCATCTCCTTTGTCATCTACACTGACCAGGCTGGACAGTGGCGGGTACAGTGTGTGCCTA AGGAGCTCCATTCATTCCAGAGCAGGCTGCCCCTGCCAGAGCCATGGCGGGGTCTTCGGG ATGAGGCCCTGGACCAGGTCAGTGGGATTCCTGGCTGCGTCTTTGTCCATGCCAGTGGCT TCATCGGTGGGCACCGTACCCGAGAGGGTGCCCTGAGCATGGCCCGGACCACCTTGGCCC TTCACTCAGCACCTCTACCTCCCACAAATCCCCTCGGCCAATAAAATGTTTTCCATCTCA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACCTGGAAGGCTGGTGGAAGATCAGGTACCAGGGCAAAGAGGGCTGGGCCCCGGCCTC CTACCTGAGGAAGAGCAGCGGGGAGCCCTCACCCCCGAAGCCAGGCCCCGGCTCACCCGC CCACGCAGGCGTCCCCGAGCTGGACGGCATCACCCGGCAGACGGGCCGGGAGAAGGAGCT GCTCAACAACCACCTTCTGGGTAAGCTGCATGGGACACCGCTTCCTGCGCGGTCTCCTAC CTCTGCTGCTCCCGCTGCCGCCGGTGCCAACCCTTTGGGGTCCGCATCGCACGCTCAGCC TGGAGTTCGTCTTGCCCTCCAAAAGGCCCCGCAGCCACCTCATGGCTCCGCCCCGAATCG GGACACACAATGGCACCTTCCACTGCGACGAGGCGCTGGCCTGCGCGTTGCTGCGCCTCC TGCCCGAGTACCGGGATGCAGAGATTGTGCGGACCCGGGACCCCGAGAAACTGGCTTCTT GTGACATCGTGGTAGACGTGGGTGGAGAGTACGACCCTCAGAGACACCGATATGACCATC ACCAGAGGTCTTTCACAGAGACCATGAGCTCCCTGTCCCCTGGGAAGCCGTGGCAGACCA AGCTGAGCAGTGCGGGACTCATCTATCTGCACTTCGGGCACAAGCTGCTGGCCCAGTTGC TGGGCACTAGCGAAGAGGACAGCGTGGTGGGCATCCTCTATGACAAGATGTATGAGAACT TCGTGGAGGAGGTGGATGCGGTGGACAATGGGATCGCCCAGTGGGAGGAGGGAGAGCCTC GGTACGCGCTGACCACGACCCTGAGTGCCCGGGTTGCTCGGCTCAATCCCACCTGGAACC AGCCCAACCAAGACACTGAGGCCGGGTTCAAGCGTGCAATGGATCTGGTTCGAGAGGAGT TTCTACAGAGACTAGACTTCTACCAGCACAGCTGGCTGCCAGCCCGGGCCCTGGTGGAAG AGGCCCTGGCCCAGCGGTTCCAGGTGGATGCAAGTGGGAAGATAATAGAACTGGCAAAGG GTGGATGCCCCTGGAAGGAGCACCTCTACCACCTGGAATTGGATCTGTCCCCCCCGGTGG CCATCTCCTTTGTCATCTACACTGACCAGGCTGGACAGTGGCGGGTACAGTGTGTGCCTA AGGAGCTCCATTCATTCCAGAGCAGGCTGCCCCTGCCAGAGCCATGGCGGGGTCTTCGGG ATGAGGCCCTGGACCAGGTCAGTGGGATTCCTGGCTGCGTCTTTGTCCATGCCAGTGGCT TCATCGGTGGGCACCGTACCCGAGAGGGTGCCCTGAGCATGGCCCGGACCACCTTGGCCC TTCACTCAGCACCTCTACCTCCCACAAATCCCCTCGGCCAATAAAATGTTTTCCATCTCA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 203-435, gnl|bosTau2|chr5 (19136009-19135786) | |
| 203-435, gnl|Hg17|chr12 (51979780-51980005) | |
| 203-435, gnl|Mm7|chr15 (102317891-102318111) | |
| 546-710, gnl|bosTau2|chr5 (19132977-19132813) | |
| 546-710, gnl|canFam2|chr27 (4906969-4906756) | |
| 546-710, gnl|dasNov1|scaffold_8820 (5844-5989) | |
| 546-710, gnl|echTel1|scaffold_308601 (63232-63444) | |
| 546-710, gnl|fr1|chrUn (307993253-307993450) | |
| 546-710, gnl|galGal2|chrUn (134244983-134245176) | |
| 546-710, gnl|hg17|chr12 (51983054-51983267) | |
| 546-710, gnl|Hg17|chr12 (51983083-51983247) | |
| 546-710, gnl|loxAfr1|scaffold_3361 (108578-108367) | |
| 546-710, gnl|mm7|chr15 (102320331-102320541) | |
| 546-710, gnl|Mm7|chr15 (102320357-102320521) | |
| 546-710, gnl|oryCun1|scaffold_206268 (10949-11157) | |
| 546-710, gnl|panTro1|chr10 (53220590-53220803) | |
| 546-710, gnl|rheMac2|chr11 (50370852-50371065) | |
| 546-710, gnl|rn3|chr7 (141159687-141159897) | |
| 546-710, gnl|tetNig1|chr11 (3392189-3392377) | |
| 546-710, gnl|xenTro1|scaffold_280 (1143778-1143609) | |
| 1164-1366, gnl|bosTau2|chr5 (19129122-19128920) | |
| 1164-1366, gnl|Hg17|chr12 (51987016-51987210) | |
| 1164-1366, gnl|Mm7|chr15 (102323791-102323993) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 203-435, gnl|bosTau2|chr5 (19136009-19135786) | |
| 203-435, gnl|Hg17|chr12 (51979780-51980005) | |
| 203-435, gnl|Mm7|chr15 (102317891-102318111) | |
| 546-710, gnl|bosTau2|chr5 (19132977-19132813) | |
| 546-710, gnl|canFam2|chr27 (4906969-4906756) | |
| 546-710, gnl|dasNov1|scaffold_8820 (5844-5989) | |
| 546-710, gnl|echTel1|scaffold_308601 (63232-63444) | |
| 546-710, gnl|fr1|chrUn (307993253-307993450) | |
| 546-710, gnl|galGal2|chrUn (134244983-134245176) | |
| 546-710, gnl|hg17|chr12 (51983054-51983267) | |
| 546-710, gnl|Hg17|chr12 (51983083-51983247) | |
| 546-710, gnl|loxAfr1|scaffold_3361 (108578-108367) | |
| 546-710, gnl|mm7|chr15 (102320331-102320541) | |
| 546-710, gnl|Mm7|chr15 (102320357-102320521) | |
| 546-710, gnl|oryCun1|scaffold_206268 (10949-11157) | |
| 546-710, gnl|panTro1|chr10 (53220590-53220803) | |
| 546-710, gnl|rheMac2|chr11 (50370852-50371065) | |
| 546-710, gnl|rn3|chr7 (141159687-141159897) | |
| 546-710, gnl|tetNig1|chr11 (3392189-3392377) | |
| 546-710, gnl|xenTro1|scaffold_280 (1143778-1143609) | |
| 1164-1366, gnl|bosTau2|chr5 (19129122-19128920) | |
| 1164-1366, gnl|Hg17|chr12 (51987016-51987210) | |
| 1164-1366, gnl|Mm7|chr15 (102323791-102323993) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| elu (0.385356) | |
| nco (0.323468) | |
| cag (0.302389) | |
| cga (0.279096) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| ecc (0.115035) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| nco (0.323468) | |
| cag (0.302389) | |
| cga (0.279096) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| ecc (0.115035) |